RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 RANBP6O60518 1105 aaKnown RBP17.44■□□□□ 0.38
CCDC88B-201ENST00000301897 NOVP48745 357 aa17.44■□□□□ 0.38
CCDC88B-201ENST00000301897 PPP2R2DQ66LE6 453 aa17.44■□□□□ 0.38
CCDC88B-201ENST00000301897 BTNL9Q6UXG8 535 aa17.44■□□□□ 0.38
CCDC88B-201ENST00000301897 WDR11Q9BZH6 1224 aa17.44■□□□□ 0.38
CCDC88B-201ENST00000301897 WNT8AQ9H1J5 351 aa17.44■□□□□ 0.38
CCDC88B-201ENST00000301897 YBX2Q9Y2T7 364 aaKnown RBP17.44■□□□□ 0.38
CCDC88B-201ENST00000301897 LCTP09848 1927 aa17.44■□□□□ 0.38
CCDC88B-201ENST00000301897 ZBBXA8MT70 800 aa17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 B4DLN1 442 aa17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 KPNA6O60684 536 aa17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 ACTN1P12814 892 aa17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 ATP2A2P16615 1042 aaKnown RBP17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 MX1P20591 662 aa17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 RFC2P35250 354 aa17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 ALDH5A1P51649 535 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 MRPL12P52815 198 aaKnown RBP17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 SNAP25P60880 206 aa17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 PSMC6P62333 389 aa17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 CTDSPL2Q05D32 466 aa17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 BAATQ14032 418 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 ALX1Q15699 326 aa17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 CCDC85BQ15834 202 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 AAK1Q2M2I8 961 aa17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 ADAMTS19Q8TE59 1207 aa17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 CHMP4CQ96CF2 233 aa17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 UHRF1Q96T88 793 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 ZBTB47Q9UFB7 747 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 TNKSO95271 1327 aa17.43■□□□□ 0.38
CCDC88B-201ENST00000301897 RBM47A0AV96 593 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-201ENST00000301897 NMT2O60551 498 aa17.42■□□□□ 0.38
CCDC88B-201ENST00000301897 TOP1P11387 765 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-201ENST00000301897 PURAQ00577 322 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-201ENST00000301897 SYDE2Q5VT97 1194 aa17.42■□□□□ 0.38
CCDC88B-201ENST00000301897 TICAM2Q86XR7 235 aa17.42■□□□□ 0.38
CCDC88B-201ENST00000301897 MTG1Q9BT17 334 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-201ENST00000301897 SCN10AQ9Y5Y9 1956 aa17.42■□□□□ 0.38
CCDC88B-201ENST00000301897 PTPDC1A2A3K4 754 aa17.41■□□□□ 0.38
CCDC88B-201ENST00000301897 FGRP09769 529 aa17.41■□□□□ 0.38
CCDC88B-201ENST00000301897 COL9A1P20849 921 aa17.41■□□□□ 0.38
CCDC88B-201ENST00000301897 TMEM67Q5HYA8 995 aa17.41■□□□□ 0.38
CCDC88B-201ENST00000301897 SCLYQ96I15 445 aa17.41■□□□□ 0.38
CCDC88B-201ENST00000301897 TCP11L1Q9NUJ3 509 aa17.41■□□□□ 0.38
CCDC88B-201ENST00000301897 MTMR7Q9Y216 660 aa17.41■□□□□ 0.38
CCDC88B-201ENST00000301897 DDX49Q9Y6V7 483 aaKnown RBP17.41■□□□□ 0.38
CCDC88B-201ENST00000301897 PITPNM1O00562 1244 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 FOXP2O15409 715 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 GTPBP6O43824 516 aaPredicted RBP17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 MYL3P08590 195 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 RABGGTBP53611 331 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 PTPN11Q06124 597 aaPredicted RBP17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 PDE4DQ08499 809 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 PPP2R5BQ15173 497 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 NFRKBQ6P4R8 1299 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 DNERQ8NFT8 737 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 OR6J1Q8NGC5 347 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 PHOSPHO2Q8TCD6 241 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 SCFD2Q8WU76 684 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 EVI5LQ96CN4 794 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 SLC9A7Q96T83 725 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 HELLSQ9NRZ9 838 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 TOMM22Q9NS69 142 aa17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 TRMT13Q9NUP7 481 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 PRRC2BQ5JSZ5 2229 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-201ENST00000301897 NFIBO00712 420 aa17.39■□□□□ 0.37
CCDC88B-201ENST00000301897 PTGS1P23219 599 aa17.39■□□□□ 0.37
CCDC88B-201ENST00000301897 SLC16A2P36021 539 aa17.39■□□□□ 0.37
CCDC88B-201ENST00000301897 RNF207Q6ZRF8 634 aa17.39■□□□□ 0.37
CCDC88B-201ENST00000301897 RETREG2Q8NC44 543 aa17.39■□□□□ 0.37
CCDC88B-201ENST00000301897 MAF1Q9H063 256 aa17.39■□□□□ 0.37
CCDC88B-201ENST00000301897 INCENPQ9NQS7 918 aa17.39■□□□□ 0.37
CCDC88B-201ENST00000301897 WDR19Q8NEZ3 1342 aa17.39■□□□□ 0.37
CCDC88B-201ENST00000301897 KIF28PB7ZC32 967 aa17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 PCP11498 1178 aaKnown RBP17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 CYP2C9P11712 490 aa17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 POU3F3P20264 500 aaPredicted RBP17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 CALML3P27482 149 aa17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 BFSP2Q13515 415 aa17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 TTLL4Q14679 1199 aa17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 NBPF20Q3BBV1 942 aa17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 FAM47CQ5HY64 1035 aa17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 TMEM63BQ5T3F8 832 aa17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 TTBK2Q6IQ55 1244 aa17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 RASGRP2Q7LDG7 609 aa17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 DEFB128Q7Z7B8 93 aa17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 OTUD7AQ8TE49 926 aaPredicted RBP17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 TTC14Q96N46 770 aa17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 PURBQ96QR8 312 aaKnown RBP17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 TMEM47Q9BQJ4 181 aa17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 ZMYM6O95789 1325 aa17.38■□□□□ 0.37
CCDC88B-201ENST00000301897 XIRP2A4UGR9 3374 aa17.37■□□□□ 0.37
CCDC88B-201ENST00000301897 A6NJR5 290 aa17.37■□□□□ 0.37
CCDC88B-201ENST00000301897 EDNRBP24530 442 aa17.37■□□□□ 0.37
CCDC88B-201ENST00000301897 RRP12Q5JTH9 1297 aaKnown RBP17.37■□□□□ 0.37
CCDC88B-201ENST00000301897 MICALL1Q8N3F8 863 aa17.37■□□□□ 0.37
CCDC88B-201ENST00000301897 CCDC155Q8N6L0 562 aa17.37■□□□□ 0.37
CCDC88B-201ENST00000301897 VWCEQ96DN2 955 aa17.37■□□□□ 0.37
CCDC88B-201ENST00000301897 GPCPD1Q9NPB8 672 aa17.37■□□□□ 0.37
CCDC88B-201ENST00000301897 REV3LO60673 3130 aa17.37■□□□□ 0.37
CCDC88B-201ENST00000301897 SCN5AQ14524 2016 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms