RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	IMD4	P50094	524 aa	Known RBP	3.58	□□□□□ -1.84
CUP9	YPL177C	YVH1	Q02256	364 aa	Known RBP	3.58	□□□□□ -1.84
CUP9	YPL177C	YPL014W	Q02606	381 aa		3.58	□□□□□ -1.84
CUP9	YPL177C	YJR112W-A	Q3E743	109 aa		3.58	□□□□□ -1.84
CUP9	YPL177C	GCN4	P03069	281 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	ART10	P18634	518 aa	Known RBP	3.57	□□□□□ -1.84
CUP9	YPL177C	SEF1	P34228	1148 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	FMP46	P36141	133 aa	Known RBP	3.57	□□□□□ -1.84
CUP9	YPL177C	LAG1	P38703	411 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	YER130C	P39959	443 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	ALG5	P40350	334 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	DOT5	P40553	215 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	AXL1	P40851	1208 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	SNG1	P46950	547 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	ATG27	P46989	271 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	VID30	P53076	958 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	BUD32	P53323	261 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	YMR160W	Q03823	816 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	COQ9	Q05779	260 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	COG4	Q06096	861 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	YLR352W	Q06479	807 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	SSK1	Q07084	712 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	YDL057W	Q07379	328 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	FMP45	Q07651	309 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	ETT1	Q08421	412 aa	Known RBP	3.57	□□□□□ -1.84
CUP9	YPL177C	CSR2	Q12734	1121 aa		3.57	□□□□□ -1.84
CUP9	YPL177C	GAL80	P04387	435 aa		3.56	□□□□□ -1.84
CUP9	YPL177C	GLN3	P18494	730 aa		3.56	□□□□□ -1.84
CUP9	YPL177C	SNC1	P31109	117 aa		3.56	□□□□□ -1.84
CUP9	YPL177C	TRS65	P32893	560 aa		3.56	□□□□□ -1.84
CUP9	YPL177C	TCD2	P36101	447 aa	Known RBP	3.56	□□□□□ -1.84
CUP9	YPL177C	SPC34	P36131	295 aa		3.56	□□□□□ -1.84
CUP9	YPL177C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	3.56	□□□□□ -1.84	not detected
CUP9	YPL177C	NDE1	P40215	560 aa		3.56	□□□□□ -1.84
CUP9	YPL177C	YGR126W	P53274	230 aa		3.56	□□□□□ -1.84
CUP9	YPL177C	RBG2	P53295	368 aa	Known RBP	3.56	□□□□□ -1.84
CUP9	YPL177C	RPT6	Q01939	405 aa	Known RBP	3.56	□□□□□ -1.84
CUP9	YPL177C	YLR281C	Q05863	155 aa		3.56	□□□□□ -1.84
CUP9	YPL177C	VPS38	Q05919	439 aa		3.56	□□□□□ -1.84
CUP9	YPL177C	SDH5	Q08230	162 aa		3.56	□□□□□ -1.84
CUP9	YPL177C	NCE102	Q12207	173 aa	RIP-Chip data	3.56	□□□□□ -1.84	not detected
CUP9	YPL177C	RLM1	Q12224	676 aa		3.56	□□□□□ -1.84
CUP9	YPL177C	ARG3	P05150	338 aa		3.55	□□□□□ -1.84
CUP9	YPL177C	PDA1	P16387	420 aa	Known RBP	3.55	□□□□□ -1.84
CUP9	YPL177C	ELO2	P25358	347 aa		3.55	□□□□□ -1.84
CUP9	YPL177C	ACH1	P32316	526 aa		3.55	□□□□□ -1.84
CUP9	YPL177C	RPN12	P32496	274 aa		3.55	□□□□□ -1.84
CUP9	YPL177C	RPN2	P32565	945 aa	Known RBP	3.55	□□□□□ -1.84
CUP9	YPL177C	RKM3	P38222	552 aa		3.55	□□□□□ -1.84
CUP9	YPL177C	BZZ1	P38822	633 aa		3.55	□□□□□ -1.84
CUP9	YPL177C	CIN4	P39110	191 aa		3.55	□□□□□ -1.84
CUP9	YPL177C	YIR014W	P40570	242 aa		3.55	□□□□□ -1.84
CUP9	YPL177C	GUF1	P46943	645 aa		3.55	□□□□□ -1.84
CUP9	YPL177C	DRN1	P53255	507 aa	Known RBP	3.55	□□□□□ -1.84
CUP9	YPL177C	TDA7	P53882	636 aa	Predicted RBP	3.55	□□□□□ -1.84
CUP9	YPL177C	VPS72	Q03388	795 aa		3.55	□□□□□ -1.84
CUP9	YPL177C	MSS11	Q03825	758 aa		3.55	□□□□□ -1.84
CUP9	YPL177C	TAH18	Q12181	623 aa		3.55	□□□□□ -1.84
CUP9	YPL177C	PDH1	Q12428	516 aa	Known RBP	3.55	□□□□□ -1.84
CUP9	YPL177C	HSC82	P15108	705 aa	Known RBP	3.54	□□□□□ -1.84
CUP9	YPL177C	CDC23	P16522	626 aa		3.54	□□□□□ -1.84
CUP9	YPL177C	SEC1	P30619	724 aa	Known RBP	3.54	□□□□□ -1.84
CUP9	YPL177C	ERG1	P32476	496 aa	Known RBP	3.54	□□□□□ -1.84
CUP9	YPL177C	ERP2	P39704	215 aa		3.54	□□□□□ -1.84
CUP9	YPL177C	YEL057C	P39983	233 aa		3.54	□□□□□ -1.84
CUP9	YPL177C	ESL1	P40456	1118 aa		3.54	□□□□□ -1.84
CUP9	YPL177C	SPO22	P40511	975 aa		3.54	□□□□□ -1.84
CUP9	YPL177C	YGR066C	P53242	292 aa		3.54	□□□□□ -1.84
CUP9	YPL177C	SHR3	Q02774	210 aa		3.54	□□□□□ -1.84
CUP9	YPL177C	CDC45	Q08032	650 aa		3.54	□□□□□ -1.84
CUP9	YPL177C	AVL9	Q12500	764 aa		3.54	□□□□□ -1.84
CUP9	YPL177C	PEP4	P07267	405 aa	Known RBP	3.53	□□□□□ -1.84
CUP9	YPL177C	PEP5	P12868	1029 aa		3.53	□□□□□ -1.84
CUP9	YPL177C	PPZ1	P26570	692 aa		3.53	□□□□□ -1.84
CUP9	YPL177C	WBP1	P33767	430 aa	Known RBP	3.53	□□□□□ -1.84
CUP9	YPL177C	YKL023W	P36103	277 aa	Known RBP	3.53	□□□□□ -1.84
CUP9	YPL177C	MIC60	P36112	540 aa		3.53	□□□□□ -1.84
CUP9	YPL177C	DED81	P38707	554 aa	Known RBP	3.53	□□□□□ -1.84
CUP9	YPL177C	RMD8	P43620	662 aa		3.53	□□□□□ -1.84
CUP9	YPL177C	SAM50	P53969	484 aa		3.53	□□□□□ -1.84
CUP9	YPL177C	RHO4	Q00246	291 aa		3.53	□□□□□ -1.84
CUP9	YPL177C	YMR087W	Q04299	284 aa		3.53	□□□□□ -1.84
CUP9	YPL177C	RBA50	Q04418	439 aa		3.53	□□□□□ -1.84
CUP9	YPL177C	HSH49	Q99181	213 aa	Predicted RBP	3.53	□□□□□ -1.84
CUP9	YPL177C	FOB1	O13329	566 aa		3.52	□□□□□ -1.85
CUP9	YPL177C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	3.52	□□□□□ -1.85	not detected
CUP9	YPL177C	MRP7	P12687	371 aa		3.52	□□□□□ -1.85
CUP9	YPL177C	TYR1	P20049	452 aa		3.52	□□□□□ -1.85
CUP9	YPL177C	OCA4	P25366	362 aa		3.52	□□□□□ -1.85
CUP9	YPL177C	RIM2	P38127	377 aa		3.52	□□□□□ -1.85
CUP9	YPL177C	MSR1	P38714	643 aa		3.52	□□□□□ -1.85
CUP9	YPL177C	MET28	P40573	187 aa		3.52	□□□□□ -1.85
CUP9	YPL177C	AIM22	P47051	409 aa		3.52	□□□□□ -1.85
CUP9	YPL177C	PET130	P47065	347 aa		3.52	□□□□□ -1.85
CUP9	YPL177C	YDR239C	Q03780	787 aa		3.52	□□□□□ -1.85
CUP9	YPL177C	YOR365C	Q08844	703 aa		3.52	□□□□□ -1.85
CUP9	YPL177C	ARP6	Q12509	438 aa		3.52	□□□□□ -1.85
CUP9	YPL177C	RAD52	P06778	471 aa	Known RBP	3.51	□□□□□ -1.85
CUP9	YPL177C	SUI2	P20459	304 aa	Known RBP	3.51	□□□□□ -1.85
CUP9	YPL177C	SEC62	P21825	274 aa		3.51	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 20.1 ms