RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C SGS1P35187 1447 aa5.92□□□□□ -1.46
DEF1YKL054C ILV5P06168 395 aaKnown RBP5.91□□□□□ -1.46
DEF1YKL054C KIN2P13186 1147 aaKnown RBP5.91□□□□□ -1.46
DEF1YKL054C CLN1P20437 546 aa5.91□□□□□ -1.46
DEF1YKL054C EMC1P25574 760 aa5.91□□□□□ -1.46
DEF1YKL054C FEN2P25621 512 aaKnown RBP5.91□□□□□ -1.46
DEF1YKL054C YIM1P28625 365 aa5.91□□□□□ -1.46
DEF1YKL054C PHO11P35842 467 aa5.91□□□□□ -1.46
DEF1YKL054C RPC37P36121 282 aa5.91□□□□□ -1.46
DEF1YKL054C APT2P36973 181 aa5.91□□□□□ -1.46
DEF1YKL054C ZTA1P38230 334 aaKnown RBP5.91□□□□□ -1.46
DEF1YKL054C PHO12P38693 467 aa5.91□□□□□ -1.46
DEF1YKL054C MPS2P53159 387 aa5.91□□□□□ -1.46
DEF1YKL054C RRP46P53256 223 aaPredicted RBP5.91□□□□□ -1.46
DEF1YKL054C FHN1P53279 174 aa5.91□□□□□ -1.46
DEF1YKL054C SNZ1Q03148 297 aa5.91□□□□□ -1.46
DEF1YKL054C ILV2P07342 687 aaKnown RBP5.91□□□□□ -1.46
DEF1YKL054C PET18P25362 215 aa5.91□□□□□ -1.46
DEF1YKL054C SAF1P38352 637 aa5.91□□□□□ -1.46
DEF1YKL054C KEL1P38853 1164 aaKnown RBP5.91□□□□□ -1.46
DEF1YKL054C AIM20P40451 204 aa5.91□□□□□ -1.46
DEF1YKL054C YGL185CP53100 379 aa5.91□□□□□ -1.46
DEF1YKL054C TIM21P53220 239 aa5.91□□□□□ -1.46
DEF1YKL054C IPI3P53877 555 aa5.91□□□□□ -1.46
DEF1YKL054C YNL144CP53907 740 aa5.91□□□□□ -1.46
DEF1YKL054C RRB1Q04225 511 aaKnown RBP5.91□□□□□ -1.46
DEF1YKL054C ADE13Q05911 482 aaKnown RBP5.91□□□□□ -1.46
DEF1YKL054C ECM7Q06200 448 aa5.91□□□□□ -1.46
DEF1YKL054C SIL1Q08199 421 aa5.91□□□□□ -1.46
DEF1YKL054C YLR122CQ12312 125 aa5.91□□□□□ -1.46
DEF1YKL054C CDC37P06101 506 aaKnown RBP5.9□□□□□ -1.46
DEF1YKL054C SEC62P21825 274 aa5.9□□□□□ -1.46
DEF1YKL054C AIM26P32858 118 aa5.9□□□□□ -1.46
DEF1YKL054C BUD2P33314 1104 aa5.9□□□□□ -1.46
DEF1YKL054C ASC1P38011 319 aaKnown RBP5.9□□□□□ -1.46
DEF1YKL054C VHS2P40463 436 aa5.9□□□□□ -1.46
DEF1YKL054C CIN1P40987 1014 aa5.9□□□□□ -1.46
DEF1YKL054C RPS7BP48164 190 aaKnown RBP5.9□□□□□ -1.46
DEF1YKL054C MTL1P53214 551 aa5.9□□□□□ -1.46
DEF1YKL054C MPP6P53725 186 aaPredicted RBP5.9□□□□□ -1.46
DEF1YKL054C YAT1P80235 687 aa5.9□□□□□ -1.46
DEF1YKL054C SPO19Q03029 223 aa5.9□□□□□ -1.46
DEF1YKL054C YMR160WQ03823 816 aa5.9□□□□□ -1.46
DEF1YKL054C URC2Q04411 772 aa5.9□□□□□ -1.46
DEF1YKL054C ARG7Q04728 441 aa5.9□□□□□ -1.46
DEF1YKL054C CRN1Q06440 651 aa5.9□□□□□ -1.46
DEF1YKL054C YRM1Q12340 786 aa5.9□□□□□ -1.46
DEF1YKL054C GLT1Q12680 2145 aaKnown RBP5.9□□□□□ -1.46
DEF1YKL054C MF(ALPHA)1P01149 165 aa5.9□□□□□ -1.47
DEF1YKL054C URA4P20051 364 aa5.9□□□□□ -1.47
DEF1YKL054C YCL068CP25593 260 aa5.9□□□□□ -1.47
DEF1YKL054C MGM101P32787 269 aaKnown RBP5.9□□□□□ -1.47
DEF1YKL054C BCS1P32839 456 aa5.9□□□□□ -1.47
DEF1YKL054C OYE3P41816 400 aaPredicted RBP5.9□□□□□ -1.47
DEF1YKL054C YJL107CP42947 387 aa5.9□□□□□ -1.47
DEF1YKL054C YGR079WP53249 370 aa5.9□□□□□ -1.47
DEF1YKL054C GIM3P53900 129 aa5.9□□□□□ -1.47
DEF1YKL054C PDS5Q04264 1277 aa5.9□□□□□ -1.47
DEF1YKL054C VTS1Q08831 523 aaKnown RBP RIP-Chip data5.9□□□□□ -1.47not detected
DEF1YKL054C HXK2P04807 486 aaKnown RBP5.89□□□□□ -1.47
DEF1YKL054C PCT1P13259 424 aa5.89□□□□□ -1.47
DEF1YKL054C CDC42P19073 191 aa5.89□□□□□ -1.47
DEF1YKL054C PUP3P25451 205 aaKnown RBP5.89□□□□□ -1.47
DEF1YKL054C MCM4P30665 933 aaKnown RBP5.89□□□□□ -1.47
DEF1YKL054C YBR144CP34215 104 aa5.89□□□□□ -1.47
DEF1YKL054C SDH8P38345 138 aa5.89□□□□□ -1.47
DEF1YKL054C MNL1P38888 796 aa5.89□□□□□ -1.47
DEF1YKL054C FKH2P41813 862 aa5.89□□□□□ -1.47
DEF1YKL054C MSE1P48525 536 aa5.89□□□□□ -1.47
DEF1YKL054C PIB2P53191 635 aa5.89□□□□□ -1.47
DEF1YKL054C PRM1P53835 661 aa5.89□□□□□ -1.47
DEF1YKL054C ERV41Q04651 352 aa5.89□□□□□ -1.47
DEF1YKL054C RRP45Q05636 305 aaKnown RBP5.89□□□□□ -1.47
DEF1YKL054C MRI1Q06489 411 aaKnown RBP5.89□□□□□ -1.47
DEF1YKL054C YLL007CQ07799 665 aa5.89□□□□□ -1.47
DEF1YKL054C VMA16P23968 213 aa5.89□□□□□ -1.47
DEF1YKL054C MSS2P40990 351 aa5.89□□□□□ -1.47
DEF1YKL054C BAP3P41815 604 aa5.89□□□□□ -1.47
DEF1YKL054C GTO1P48239 356 aa5.89□□□□□ -1.47
DEF1YKL054C MSY1P48527 492 aa5.89□□□□□ -1.47
DEF1YKL054C CSI1Q04368 295 aa5.89□□□□□ -1.47
DEF1YKL054C YLR455WQ06188 304 aa5.89□□□□□ -1.47
DEF1YKL054C YLR173WQ06247 608 aa5.89□□□□□ -1.47
DEF1YKL054C ATG9Q12142 997 aa5.89□□□□□ -1.47
DEF1YKL054C NTR2P36118 322 aaPredicted RBP5.88□□□□□ -1.47
DEF1YKL054C MRPL7P36519 292 aa5.88□□□□□ -1.47
DEF1YKL054C MMM1P41800 426 aa5.88□□□□□ -1.47
DEF1YKL054C NMD5P46970 1048 aa5.88□□□□□ -1.47
DEF1YKL054C URB2P47108 1174 aa5.88□□□□□ -1.47
DEF1YKL054C RTT102P53330 157 aa5.88□□□□□ -1.47
DEF1YKL054C RSM28Q03430 361 aa5.88□□□□□ -1.47
DEF1YKL054C RSM24Q03976 319 aa5.88□□□□□ -1.47
DEF1YKL054C CHS2P14180 963 aa5.87□□□□□ -1.47
DEF1YKL054C UGA1P17649 471 aa5.87□□□□□ -1.47
DEF1YKL054C KTR6P54070 446 aa5.87□□□□□ -1.47
DEF1YKL054C YMR102CQ03177 834 aa5.87□□□□□ -1.47
DEF1YKL054C DIA2Q08496 732 aaPredicted RBP5.87□□□□□ -1.47
DEF1YKL054C YOR352WQ08816 343 aa5.87□□□□□ -1.47
DEF1YKL054C SWM1Q12379 170 aa5.87□□□□□ -1.47
DEF1YKL054C STE2D6VTK4 431 aa5.87□□□□□ -1.47
Retrieved 100 of 5,963 RNA–protein pairs in 22.4 ms