RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 TFAP4Q01664 338 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 PDE4BQ07343 736 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 ITGA7Q13683 1181 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 FSCN1Q16658 493 aaKnown RBP17.84■□□□□ 0.45
SYNE2-228ENST00000639659 C20orf194Q5TEA3 1177 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 RASIP1Q5U651 963 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 KCTD1Q719H9 257 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 IFNL3Q8IZI9 196 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 FAM133AQ8N9E0 248 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 MKL1Q969V6 931 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 TRERF1Q96PN7 1200 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 NACAP1Q9BZK3 213 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 KATNBL1Q9H079 304 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 NAPBQ9H115 298 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 TRPV6Q9H1D0 765 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 SLC28A3Q9HAS3 691 aa17.84■□□□□ 0.45
SYNE2-228ENST00000639659 ASB14A6NK59 587 aa17.83■□□□□ 0.44
SYNE2-228ENST00000639659 ZEB2O60315 1214 aa17.83■□□□□ 0.44
SYNE2-228ENST00000639659 CD4P01730 458 aa17.83■□□□□ 0.44
SYNE2-228ENST00000639659 ZFYP08048 801 aaPredicted RBP17.83■□□□□ 0.44
SYNE2-228ENST00000639659 SLC3A2P08195 630 aaKnown RBP17.83■□□□□ 0.44
SYNE2-228ENST00000639659 COL9A1P20849 921 aa17.83■□□□□ 0.44
SYNE2-228ENST00000639659 RABGGTBP53611 331 aa17.83■□□□□ 0.44
SYNE2-228ENST00000639659 ADGRE1Q14246 886 aa17.83■□□□□ 0.44
SYNE2-228ENST00000639659 NSMFQ6X4W1 530 aa17.83■□□□□ 0.44
SYNE2-228ENST00000639659 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.83■□□□□ 0.44
SYNE2-228ENST00000639659 FAM160B2Q86V87 743 aa17.83■□□□□ 0.44
SYNE2-228ENST00000639659 CHURC1Q8WUH1 139 aa17.83■□□□□ 0.44
SYNE2-228ENST00000639659 HERVK_113Q902F9 699 aa17.83■□□□□ 0.44
SYNE2-228ENST00000639659 SEC62Q99442 399 aaKnown RBP17.83■□□□□ 0.44
SYNE2-228ENST00000639659 PDGFCQ9NRA1 345 aa17.83■□□□□ 0.44
SYNE2-228ENST00000639659 STX8Q9UNK0 236 aa17.83■□□□□ 0.44
SYNE2-228ENST00000639659 YBX2Q9Y2T7 364 aaKnown RBP17.83■□□□□ 0.44
SYNE2-228ENST00000639659 PATL2C9JE40 543 aaKnown RBP17.82■□□□□ 0.44
SYNE2-228ENST00000639659 SMPD1P17405 629 aa17.82■□□□□ 0.44
SYNE2-228ENST00000639659 AKNAD1Q5T1N1 836 aa17.82■□□□□ 0.44
SYNE2-228ENST00000639659 RASGRP2Q7LDG7 609 aa17.82■□□□□ 0.44
SYNE2-228ENST00000639659 NEDD1Q8NHV4 660 aa17.82■□□□□ 0.44
SYNE2-228ENST00000639659 ADAMTS19Q8TE59 1207 aa17.82■□□□□ 0.44
SYNE2-228ENST00000639659 ATXN2LQ8WWM7 1075 aaKnown RBP17.82■□□□□ 0.44
SYNE2-228ENST00000639659 FSD1Q9BTV5 496 aa17.82■□□□□ 0.44
SYNE2-228ENST00000639659 RCAN3Q9UKA8 241 aa17.82■□□□□ 0.44
SYNE2-228ENST00000639659 PLIN4Q96Q06 1357 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 ZNF536O15090 1300 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 CHD9Q3L8U1 2897 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 B4GALT4O60513 344 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 CABYRO75952 493 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 FDX1P10109 184 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 PPARAQ07869 468 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 CCDC96Q2M329 555 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 MUM1L1Q5H9M0 696 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 TMEM63BQ5T3F8 832 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 PPP2R2DQ66LE6 453 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 STAG1Q8WVM7 1258 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 SCLYQ96I15 445 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 ASB2Q96Q27 587 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 RAPGEFL1Q9UHV5 662 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 CCPG1Q9ULG6 757 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 SYNPO2Q9UMS6 1093 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 GNEQ9Y223 722 aaKnown RBP17.81■□□□□ 0.44
SYNE2-228ENST00000639659 SLC4A7Q9Y6M7 1214 aa17.81■□□□□ 0.44
SYNE2-228ENST00000639659 TSPY2A6NKD2 308 aa17.8■□□□□ 0.44
SYNE2-228ENST00000639659 MYOGP15173 224 aa17.8■□□□□ 0.44
SYNE2-228ENST00000639659 MRPS5P82675 430 aaKnown RBP17.8■□□□□ 0.44
SYNE2-228ENST00000639659 SKIV2LQ15477 1246 aaKnown RBP17.8■□□□□ 0.44
SYNE2-228ENST00000639659 LRRFIP1Q32MZ4 808 aaKnown RBP17.8■□□□□ 0.44
SYNE2-228ENST00000639659 TKFCQ3LXA3 575 aa17.8■□□□□ 0.44
SYNE2-228ENST00000639659 KIAA1211Q6ZU35 1233 aa17.8■□□□□ 0.44
SYNE2-228ENST00000639659 PURBQ96QR8 312 aaKnown RBP17.8■□□□□ 0.44
SYNE2-228ENST00000639659 UHRF1Q96T88 793 aaPredicted RBP17.8■□□□□ 0.44
SYNE2-228ENST00000639659 NOC4LQ9BVI4 516 aaKnown RBP17.8■□□□□ 0.44
SYNE2-228ENST00000639659 WNT8AQ9H1J5 351 aa17.8■□□□□ 0.44
SYNE2-228ENST00000639659 GRIN2DO15399 1336 aa17.79■□□□□ 0.44
SYNE2-228ENST00000639659 NMT2O60551 498 aa17.79■□□□□ 0.44
SYNE2-228ENST00000639659 CTDSPL2Q05D32 466 aa17.79■□□□□ 0.44
SYNE2-228ENST00000639659 GMCL1Q96IK5 515 aa17.79■□□□□ 0.44
SYNE2-228ENST00000639659 PRR12Q9ULL5 1215 aa17.79■□□□□ 0.44
SYNE2-228ENST00000639659 MYL3P08590 195 aa17.78■□□□□ 0.44
SYNE2-228ENST00000639659 FAM47CQ5HY64 1035 aa17.78■□□□□ 0.44
SYNE2-228ENST00000639659 DEFB128Q7Z7B8 93 aa17.78■□□□□ 0.44
SYNE2-228ENST00000639659 RPUSD2Q8IZ73 545 aaKnown RBP17.78■□□□□ 0.44
SYNE2-228ENST00000639659 SLC43A3Q8NBI5 491 aa17.78■□□□□ 0.44
SYNE2-228ENST00000639659 PPP1R13LQ8WUF5 828 aa17.78■□□□□ 0.44
SYNE2-228ENST00000639659 TSPYL2Q9H2G4 693 aaPredicted RBP17.78■□□□□ 0.44
SYNE2-228ENST00000639659 INCENPQ9NQS7 918 aa17.78■□□□□ 0.44
SYNE2-228ENST00000639659 TOMM22Q9NS69 142 aa17.78■□□□□ 0.44
SYNE2-228ENST00000639659 CYP39A1Q9NYL5 469 aa17.78■□□□□ 0.44
SYNE2-228ENST00000639659 LCTP09848 1927 aa17.77■□□□□ 0.44
SYNE2-228ENST00000639659 RANBP6O60518 1105 aaKnown RBP17.77■□□□□ 0.44
SYNE2-228ENST00000639659 CYP2C9P11712 490 aa17.77■□□□□ 0.44
SYNE2-228ENST00000639659 NKX3-2P78367 333 aa17.77■□□□□ 0.44
SYNE2-228ENST00000639659 IQSEC1Q6DN90 963 aa17.77■□□□□ 0.44
SYNE2-228ENST00000639659 RCSD1Q6JBY9 416 aa17.77■□□□□ 0.44
SYNE2-228ENST00000639659 TAPT1Q6NXT6 567 aa17.77■□□□□ 0.44
SYNE2-228ENST00000639659 CERS4Q9HA82 394 aa17.77■□□□□ 0.44
SYNE2-228ENST00000639659 TRMT13Q9NUP7 481 aaKnown RBP17.77■□□□□ 0.44
SYNE2-228ENST00000639659 PTPDC1A2A3K4 754 aa17.76■□□□□ 0.43
SYNE2-228ENST00000639659 ATP2A2P16615 1042 aaKnown RBP17.76■□□□□ 0.43
SYNE2-228ENST00000639659 SLC16A2P36021 539 aa17.76■□□□□ 0.43
SYNE2-228ENST00000639659 CHMP4BP1P59074 171 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms