RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ABCB11O95342 1321 aa21.26■□□□□ 0.99
CLN3-259ENST00000637551 SMCHD1A6NHR9 2005 aa21.26■□□□□ 0.99
CLN3-259ENST00000637551 ZBTB5O15062 677 aa21.25■□□□□ 0.99
CLN3-259ENST00000637551 ECM2O94769 699 aaPredicted RBP21.25■□□□□ 0.99
CLN3-259ENST00000637551 GOLGA8HP0CJ92 632 aa21.25■□□□□ 0.99
CLN3-259ENST00000637551 GJA8P48165 433 aa21.25■□□□□ 0.99
CLN3-259ENST00000637551 GHRHRQ02643 423 aa21.25■□□□□ 0.99
CLN3-259ENST00000637551 APOA5Q6Q788 366 aa21.25■□□□□ 0.99
CLN3-259ENST00000637551 NFXL1Q6ZNB6 911 aa21.25■□□□□ 0.99
CLN3-259ENST00000637551 ANKRD35Q8N283 1001 aa21.25■□□□□ 0.99
CLN3-259ENST00000637551 JAKMIP1Q96N16 626 aaKnown RBP21.25■□□□□ 0.99
CLN3-259ENST00000637551 JMJD4Q9H9V9 463 aa21.25■□□□□ 0.99
CLN3-259ENST00000637551 A1CFQ9NQ94 594 aaKnown RBP21.25■□□□□ 0.99
CLN3-259ENST00000637551 RBM28Q9NW13 759 aaKnown RBP21.25■□□□□ 0.99
CLN3-259ENST00000637551 ALAS1P13196 640 aa21.24■□□□□ 0.99
CLN3-259ENST00000637551 PRKAR2AP13861 404 aaKnown RBP21.24■□□□□ 0.99
CLN3-259ENST00000637551 RPS6KB1P23443 525 aa21.24■□□□□ 0.99
CLN3-259ENST00000637551 EVCP57679 992 aa21.24■□□□□ 0.99
CLN3-259ENST00000637551 FAM133AQ8N9E0 248 aa21.24■□□□□ 0.99
CLN3-259ENST00000637551 IL27Q8NEV9 243 aa21.24■□□□□ 0.99
CLN3-259ENST00000637551 NPLOC4Q8TAT6 608 aa21.24■□□□□ 0.99
CLN3-259ENST00000637551 RNF208Q9H0X6 261 aa21.24■□□□□ 0.99
CLN3-259ENST00000637551 SENP2Q9HC62 589 aa21.24■□□□□ 0.99
CLN3-259ENST00000637551 ZSWIM6Q9HCJ5 1215 aa21.24■□□□□ 0.99
CLN3-259ENST00000637551 CCDC174Q6PII3 467 aa21.23■□□□□ 0.99
CLN3-259ENST00000637551 MCF2L2Q86YR7 1114 aa21.23■□□□□ 0.99
CLN3-259ENST00000637551 STAG2Q8N3U4 1231 aa21.23■□□□□ 0.99
CLN3-259ENST00000637551 ANKLE1Q8NAG6 615 aa21.23■□□□□ 0.99
CLN3-259ENST00000637551 TINF2Q9BSI4 451 aa21.23■□□□□ 0.99
CLN3-259ENST00000637551 AMNQ9BXJ7 453 aa21.23■□□□□ 0.99
CLN3-259ENST00000637551 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.23■□□□□ 0.99
CLN3-259ENST00000637551 CYP39A1Q9NYL5 469 aa21.23■□□□□ 0.99
CLN3-259ENST00000637551 BAZ2BQ9UIF8 2168 aaKnown RBP21.23■□□□□ 0.99
CLN3-259ENST00000637551 CCDC196A0A1B0GTZ2 297 aa21.22■□□□□ 0.99
CLN3-259ENST00000637551 CYBAP13498 195 aa21.22■□□□□ 0.99
CLN3-259ENST00000637551 CACNB2Q08289 660 aaPredicted RBP21.22■□□□□ 0.99
CLN3-259ENST00000637551 MTFR1Q15390 333 aa21.22■□□□□ 0.99
CLN3-259ENST00000637551 CCL14Q16627 93 aa21.22■□□□□ 0.99
CLN3-259ENST00000637551 QRICH1Q2TAL8 776 aa21.22■□□□□ 0.99
CLN3-259ENST00000637551 RUFY3Q7L099 469 aa21.22■□□□□ 0.99
CLN3-259ENST00000637551 FBXO11Q86XK2 927 aa21.22■□□□□ 0.99
CLN3-259ENST00000637551 FANCBQ8NB91 859 aa21.22■□□□□ 0.99
CLN3-259ENST00000637551 SLC17A8Q8NDX2 589 aa21.22■□□□□ 0.99
CLN3-259ENST00000637551 UBA5Q9GZZ9 404 aa21.22■□□□□ 0.99
CLN3-259ENST00000637551 CRISPLD2Q9H0B8 497 aa21.22■□□□□ 0.99
CLN3-259ENST00000637551 ADD3Q9UEY8 706 aaKnown RBP21.22■□□□□ 0.99
CLN3-259ENST00000637551 MRPL11Q9Y3B7 192 aaKnown RBP21.22■□□□□ 0.99
CLN3-259ENST00000637551 FRMPD3Q5JV73 1810 aa21.22■□□□□ 0.99
CLN3-259ENST00000637551 LCTP09848 1927 aa21.21■□□□□ 0.99
CLN3-259ENST00000637551 COL6A3P12111 3177 aa21.21■□□□□ 0.99
CLN3-259ENST00000637551 PNMA6FA0A0J9YX94 578 aa21.21■□□□□ 0.99
CLN3-259ENST00000637551 ASB14A6NK59 587 aa21.21■□□□□ 0.99
CLN3-259ENST00000637551 POTEB2H3BUK9 544 aa21.21■□□□□ 0.99
CLN3-259ENST00000637551 CASTP20810 708 aaKnown RBP21.21■□□□□ 0.99
CLN3-259ENST00000637551 CHRDL2Q6WN34 429 aa21.21■□□□□ 0.99
CLN3-259ENST00000637551 DNERQ8NFT8 737 aa21.21■□□□□ 0.99
CLN3-259ENST00000637551 UNC93B1Q9H1C4 597 aa21.21■□□□□ 0.99
CLN3-259ENST00000637551 HOMER2Q9NSB8 354 aa21.21■□□□□ 0.99
CLN3-259ENST00000637551 FLRT1Q9NZU1 646 aa21.21■□□□□ 0.99
CLN3-259ENST00000637551 CYP46A1Q9Y6A2 500 aa21.21■□□□□ 0.99
CLN3-259ENST00000637551 ZBTB43O43298 467 aa21.2■□□□□ 0.98
CLN3-259ENST00000637551 DHX16O60231 1041 aaKnown RBP21.2■□□□□ 0.98
CLN3-259ENST00000637551 SGPL1O95470 568 aa21.2■□□□□ 0.98
CLN3-259ENST00000637551 FGD1P98174 961 aa21.2■□□□□ 0.98
CLN3-259ENST00000637551 MORC4Q8TE76 937 aa21.2■□□□□ 0.98
CLN3-259ENST00000637551 U2AF1L4Q8WU68 220 aaKnown RBP21.2■□□□□ 0.98
CLN3-259ENST00000637551 NUP133Q8WUM0 1156 aa21.2■□□□□ 0.98
CLN3-259ENST00000637551 CLEC4DQ8WXI8 215 aa21.2■□□□□ 0.98
CLN3-259ENST00000637551 MPHOSPH6Q99547 160 aaKnown RBP21.2■□□□□ 0.98
CLN3-259ENST00000637551 ALDH8A1Q9H2A2 487 aaPredicted RBP21.2■□□□□ 0.98
CLN3-259ENST00000637551 RBM27Q9P2N5 1060 aaKnown RBP21.2■□□□□ 0.98
CLN3-259ENST00000637551 B4DLN1 442 aa21.19■□□□□ 0.98
CLN3-259ENST00000637551 hCG_1984214I3L0E3 225 aa21.19■□□□□ 0.98
CLN3-259ENST00000637551 CYTH3O43739 400 aa21.19■□□□□ 0.98
CLN3-259ENST00000637551 PGK2P07205 417 aa21.19■□□□□ 0.98
CLN3-259ENST00000637551 MRPL12P52815 198 aaKnown RBP21.19■□□□□ 0.98
CLN3-259ENST00000637551 COL9A3Q14050 684 aaPredicted RBP21.19■□□□□ 0.98
CLN3-259ENST00000637551 MUM1L1Q5H9M0 696 aa21.19■□□□□ 0.98
CLN3-259ENST00000637551 TMTC3Q6ZXV5 915 aa21.19■□□□□ 0.98
CLN3-259ENST00000637551 ZNF713Q8N859 430 aaPredicted RBP21.19■□□□□ 0.98
CLN3-259ENST00000637551 RRP36Q96EU6 259 aaKnown RBP21.19■□□□□ 0.98
CLN3-259ENST00000637551 ABHD16BQ9H3Z7 469 aa21.19■□□□□ 0.98
CLN3-259ENST00000637551 GPHNQ9NQX3 736 aaPredicted RBP21.19■□□□□ 0.98
CLN3-259ENST00000637551 CNPY2Q9Y2B0 182 aa21.19■□□□□ 0.98
CLN3-259ENST00000637551 MCM3APO60318 1980 aa21.18■□□□□ 0.98
CLN3-259ENST00000637551 SEPT4O43236 478 aa21.18■□□□□ 0.98
CLN3-259ENST00000637551 CHMP4CQ96CF2 233 aa21.18■□□□□ 0.98
CLN3-259ENST00000637551 SEC63Q9UGP8 760 aaKnown RBP21.18■□□□□ 0.98
CLN3-259ENST00000637551 CUL9Q8IWT3 2517 aa21.18■□□□□ 0.98
CLN3-259ENST00000637551 NFIBO00712 420 aa21.17■□□□□ 0.98
CLN3-259ENST00000637551 C8orf34Q49A92 452 aa21.17■□□□□ 0.98
CLN3-259ENST00000637551 RNF207Q6ZRF8 634 aa21.17■□□□□ 0.98
CLN3-259ENST00000637551 MICU3Q86XE3 530 aa21.17■□□□□ 0.98
CLN3-259ENST00000637551 FGD4Q96M96 766 aa21.17■□□□□ 0.98
CLN3-259ENST00000637551 LRRC2Q9BYS8 371 aa21.17■□□□□ 0.98
CLN3-259ENST00000637551 CPVLQ9H3G5 476 aa21.17■□□□□ 0.98
CLN3-259ENST00000637551 OGDHLQ9ULD0 1010 aa21.17■□□□□ 0.98
CLN3-259ENST00000637551 LRRC37A2A6NM11 1700 aa21.17■□□□□ 0.98
CLN3-259ENST00000637551 KLF18A0A0U1RQI7 1052 aa21.16■□□□□ 0.98
CLN3-259ENST00000637551 CYP2C19P33261 490 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms