RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 ZNFX1Q9P2E3 1918 aaKnown RBP13.65□□□□□ -0.22
CLN3-257ENST00000637110 B4E1Z4 1266 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 ATP2A1O14983 1001 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 KIAA0355O15063 1070 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 ALAS1P13196 640 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 CHMLP26374 656 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 SLC16A2P36021 539 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 EPHB4P54760 987 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 LRRC41Q15345 812 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 CCDC178Q5BJE1 867 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 ANO1Q5XXA6 986 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 RASGRP2Q7LDG7 609 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 CHST13Q8NET6 341 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 KRT23Q9C075 422 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 PRR12Q9ULL5 1215 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 PIEZO1Q92508 2521 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 TCF20Q9UGU0 1960 aaKnown RBP13.64□□□□□ -0.23
CLN3-257ENST00000637110 PLXNA1Q9UIW2 1896 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 TRDNQ13061 729 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 AAK1Q2M2I8 961 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 ZNF792Q3KQV3 632 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 TTBK2Q6IQ55 1244 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 KIAA1211Q6ZU35 1233 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 CENPQQ7L2Z9 268 aaPredicted RBP13.64□□□□□ -0.23
CLN3-257ENST00000637110 AGBL1Q96MI9 1066 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 TINF2Q9BSI4 451 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 UBAC1Q9BSL1 405 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 IL25Q9H293 177 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 PRDM12Q9H4Q4 367 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 ACAD9Q9H845 621 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 KAT14Q9H8E8 782 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 CNNM2Q9H8M5 875 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 RNF146Q9NTX7 359 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 TMEM39AQ9NV64 488 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 PHF24Q9UPV7 400 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 CNPY2Q9Y2B0 182 aa13.64□□□□□ -0.23
CLN3-257ENST00000637110 DIS3Q9Y2L1 958 aaKnown RBP13.64□□□□□ -0.23
CLN3-257ENST00000637110 PLA2G6O60733 806 aa13.63□□□□□ -0.23
CLN3-257ENST00000637110 PQBP1O60828 265 aaKnown RBP13.63□□□□□ -0.23
CLN3-257ENST00000637110 IGHA2P01877 340 aa13.63□□□□□ -0.23
CLN3-257ENST00000637110 IGFBP4P22692 258 aa13.63□□□□□ -0.23
CLN3-257ENST00000637110 ITGB8P26012 769 aa13.63□□□□□ -0.23
CLN3-257ENST00000637110 NOVP48745 357 aa13.63□□□□□ -0.23
CLN3-257ENST00000637110 NT5C2P49902 561 aa13.63□□□□□ -0.23
CLN3-257ENST00000637110 CCDC85BQ15834 202 aaPredicted RBP13.63□□□□□ -0.23
CLN3-257ENST00000637110 SYDE2Q5VT97 1194 aa13.63□□□□□ -0.23
CLN3-257ENST00000637110 RNF180Q86T96 592 aa13.63□□□□□ -0.23
CLN3-257ENST00000637110 DGKHQ86XP1 1220 aa13.63□□□□□ -0.23
CLN3-257ENST00000637110 TRERF1Q96PN7 1200 aa13.63□□□□□ -0.23
CLN3-257ENST00000637110 ZSCAN10Q96SZ4 725 aaPredicted RBP13.63□□□□□ -0.23
CLN3-257ENST00000637110 ZSWIM5Q9P217 1185 aa13.63□□□□□ -0.23
CLN3-257ENST00000637110 CCPG1Q9ULG6 757 aa13.63□□□□□ -0.23
CLN3-257ENST00000637110 NEFLP07196 543 aa13.62□□□□□ -0.23
CLN3-257ENST00000637110 RARBP10826 455 aa13.62□□□□□ -0.23
CLN3-257ENST00000637110 PDHBP11177 359 aa13.62□□□□□ -0.23
CLN3-257ENST00000637110 PTH1RQ03431 593 aa13.62□□□□□ -0.23
CLN3-257ENST00000637110 TKFCQ3LXA3 575 aa13.62□□□□□ -0.23
CLN3-257ENST00000637110 CXXC1Q9P0U4 656 aaPredicted RBP13.62□□□□□ -0.23
CLN3-257ENST00000637110 U3KPZ7 1027 aaPredicted RBP13.62□□□□□ -0.23
CLN3-257ENST00000637110 DCDC2CA8MYV0 355 aa13.61□□□□□ -0.23
CLN3-257ENST00000637110 DHX16O60231 1041 aaKnown RBP13.61□□□□□ -0.23
CLN3-257ENST00000637110 GOLGA8HP0CJ92 632 aa13.61□□□□□ -0.23
CLN3-257ENST00000637110 PPIGQ13427 754 aaKnown RBP eCLIP13.61□□□□□ -0.23
CLN3-257ENST00000637110 RAB30Q15771 203 aa13.61□□□□□ -0.23
CLN3-257ENST00000637110 NSMFQ6X4W1 530 aa13.61□□□□□ -0.23
CLN3-257ENST00000637110 PNMA1Q8ND90 353 aa13.61□□□□□ -0.23
CLN3-257ENST00000637110 CCDC136Q96JN2 1154 aa13.61□□□□□ -0.23
CLN3-257ENST00000637110 TOX2Q96NM4 488 aa13.61□□□□□ -0.23
CLN3-257ENST00000637110 PBX4Q9BYU1 374 aa13.61□□□□□ -0.23
CLN3-257ENST00000637110 XPNPEP3Q9NQH7 507 aa13.61□□□□□ -0.23
CLN3-257ENST00000637110 MSRAQ9UJ68 235 aa13.61□□□□□ -0.23
CLN3-257ENST00000637110 ZHX1Q9UKY1 873 aaPredicted RBP13.61□□□□□ -0.23
CLN3-257ENST00000637110 ZNF536O15090 1300 aa13.61□□□□□ -0.23
CLN3-257ENST00000637110 TNKSO95271 1327 aa13.61□□□□□ -0.23
CLN3-257ENST00000637110 SGSM2O43147 1006 aa13.6□□□□□ -0.23
CLN3-257ENST00000637110 TIMP1P01033 207 aa13.6□□□□□ -0.23
CLN3-257ENST00000637110 ICAM1P05362 532 aa13.6□□□□□ -0.23
CLN3-257ENST00000637110 TAL1P17542 331 aaPredicted RBP13.6□□□□□ -0.23
CLN3-257ENST00000637110 ZNF543Q08ER8 600 aa13.6□□□□□ -0.23
CLN3-257ENST00000637110 TMEM31Q5JXX7 168 aa13.6□□□□□ -0.23
CLN3-257ENST00000637110 IFIT1BQ5T764 474 aaKnown RBP13.6□□□□□ -0.23
CLN3-257ENST00000637110 BTNL9Q6UXG8 535 aa13.6□□□□□ -0.23
CLN3-257ENST00000637110 ANKRD33Q7Z3H0 272 aa13.6□□□□□ -0.23
CLN3-257ENST00000637110 RALYLQ86SE5 291 aaKnown RBP13.6□□□□□ -0.23
CLN3-257ENST00000637110 SKAP1Q86WV1 359 aa13.6□□□□□ -0.23
CLN3-257ENST00000637110 MSL3Q8N5Y2 521 aaKnown RBP13.6□□□□□ -0.23
CLN3-257ENST00000637110 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.6□□□□□ -0.23
CLN3-257ENST00000637110 LRFN3Q9BTN0 628 aa13.6□□□□□ -0.23
CLN3-257ENST00000637110 UBA5Q9GZZ9 404 aa13.6□□□□□ -0.23
CLN3-257ENST00000637110 NRBP1Q9UHY1 535 aa13.6□□□□□ -0.23
CLN3-257ENST00000637110 LAMA4Q16363 1823 aa13.6□□□□□ -0.23
CLN3-257ENST00000637110 SMCHD1A6NHR9 2005 aa13.59□□□□□ -0.23
CLN3-257ENST00000637110 DNAJC25-GNG10A0A024R161 153 aa13.59□□□□□ -0.23
CLN3-257ENST00000637110 A0A1W2PQ45 241 aaPredicted RBP13.59□□□□□ -0.23
CLN3-257ENST00000637110 A0A1W2PQY0 241 aa13.59□□□□□ -0.23
CLN3-257ENST00000637110 ERICH2A1L162 156 aa13.59□□□□□ -0.23
CLN3-257ENST00000637110 CYP21A2P08686 494 aa13.59□□□□□ -0.23
CLN3-257ENST00000637110 AKR1A1P14550 325 aa13.59□□□□□ -0.23
CLN3-257ENST00000637110 PBX2P40425 430 aa13.59□□□□□ -0.23
CLN3-257ENST00000637110 ADGRE1Q14246 886 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms