RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ARHGAP45Q92619 1136 aa17.52■□□□□ 0.4
CLN3-249ENST00000636685 FTOQ9C0B1 505 aaKnown RBP eCLIP17.52■□□□□ 0.4
CLN3-249ENST00000636685 ARMT1Q9H993 441 aa17.52■□□□□ 0.4
CLN3-249ENST00000636685 PDGFCQ9NRA1 345 aa17.52■□□□□ 0.4
CLN3-249ENST00000636685 CTDP1Q9Y5B0 961 aaPredicted RBP17.52■□□□□ 0.4
CLN3-249ENST00000636685 GREB1LQ9C091 1923 aaPredicted RBP17.52■□□□□ 0.4
CLN3-249ENST00000636685 USP34Q70CQ2 3546 aa17.52■□□□□ 0.39
CLN3-249ENST00000636685 ZNF536O15090 1300 aa17.51■□□□□ 0.39
CLN3-249ENST00000636685 ZDBF2Q9HCK1 2354 aa17.51■□□□□ 0.39
CLN3-249ENST00000636685 C12orf60Q5U649 245 aa17.51■□□□□ 0.39
CLN3-249ENST00000636685 C16orf86Q6ZW13 317 aa17.51■□□□□ 0.39
CLN3-249ENST00000636685 TMCO2Q7Z6W1 182 aaPredicted RBP17.51■□□□□ 0.39
CLN3-249ENST00000636685 TRMT2AQ8IZ69 625 aaKnown RBP17.51■□□□□ 0.39
CLN3-249ENST00000636685 PRPF38AQ8NAV1 312 aaKnown RBP17.51■□□□□ 0.39
CLN3-249ENST00000636685 KIFC2Q96AC6 838 aa17.51■□□□□ 0.39
CLN3-249ENST00000636685 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.51■□□□□ 0.39
CLN3-249ENST00000636685 HOMER2Q9NSB8 354 aa17.51■□□□□ 0.39
CLN3-249ENST00000636685 FBXO40Q9UH90 709 aa17.51■□□□□ 0.39
CLN3-249ENST00000636685 MTUS1Q9ULD2 1270 aa17.51■□□□□ 0.39
CLN3-249ENST00000636685 MYH4Q9Y623 1939 aa17.51■□□□□ 0.39
CLN3-249ENST00000636685 SIP14410 1827 aa17.5■□□□□ 0.39
CLN3-249ENST00000636685 TCRBV5S4A2TA0A5A2 114 aa17.5■□□□□ 0.39
CLN3-249ENST00000636685 POTEB3A0JP26 581 aa17.5■□□□□ 0.39
CLN3-249ENST00000636685 SOWAHBA6NEL2 793 aa17.5■□□□□ 0.39
CLN3-249ENST00000636685 NDUFB10O96000 172 aa17.5■□□□□ 0.39
CLN3-249ENST00000636685 CT47B1P0C2W7 299 aaPredicted RBP17.5■□□□□ 0.39
CLN3-249ENST00000636685 SUPT20HL2P0C7V6 817 aa17.5■□□□□ 0.39
CLN3-249ENST00000636685 RFC2P35250 354 aa17.5■□□□□ 0.39
CLN3-249ENST00000636685 RARSP54136 660 aaKnown RBP17.5■□□□□ 0.39
CLN3-249ENST00000636685 ATP8B2P98198 1209 aa17.5■□□□□ 0.39
CLN3-249ENST00000636685 POTEBQ6S5H4 581 aa17.5■□□□□ 0.39
CLN3-249ENST00000636685 FAM133AQ8N9E0 248 aa17.5■□□□□ 0.39
CLN3-249ENST00000636685 CHST13Q8NET6 341 aa17.5■□□□□ 0.39
CLN3-249ENST00000636685 SLC38A10Q9HBR0 1119 aa17.5■□□□□ 0.39
CLN3-249ENST00000636685 GRXCR2A6NFK2 248 aa17.49■□□□□ 0.39
CLN3-249ENST00000636685 F5H6K3 240 aa17.49■□□□□ 0.39
CLN3-249ENST00000636685 IQCF3P0C7M6 154 aa17.49■□□□□ 0.39
CLN3-249ENST00000636685 KLRC3Q07444 240 aa17.49■□□□□ 0.39
CLN3-249ENST00000636685 HFE2Q6ZVN8 426 aa17.49■□□□□ 0.39
CLN3-249ENST00000636685 PPP1R13LQ8WUF5 828 aa17.49■□□□□ 0.39
CLN3-249ENST00000636685 SUGCTQ9HAC7 445 aa17.49■□□□□ 0.39
CLN3-249ENST00000636685 NOP58Q9Y2X3 529 aaKnown RBP17.49■□□□□ 0.39
CLN3-249ENST00000636685 SCN10AQ9Y5Y9 1956 aa17.48■□□□□ 0.39
CLN3-249ENST00000636685 CACNA1AO00555 2505 aa17.48■□□□□ 0.39
CLN3-249ENST00000636685 USP17L12C9JPN9 530 aa17.48■□□□□ 0.39
CLN3-249ENST00000636685 USP17L21D6R901 530 aa17.48■□□□□ 0.39
CLN3-249ENST00000636685 SLFNL1Q499Z3 407 aa17.48■□□□□ 0.39
CLN3-249ENST00000636685 TAPT1Q6NXT6 567 aa17.48■□□□□ 0.39
CLN3-249ENST00000636685 EEPD1Q7L9B9 569 aa17.48■□□□□ 0.39
CLN3-249ENST00000636685 FBXO16Q8IX29 292 aaPredicted RBP17.48■□□□□ 0.39
CLN3-249ENST00000636685 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.48■□□□□ 0.39
CLN3-249ENST00000636685 ATP8A2Q9NTI2 1148 aa17.48■□□□□ 0.39
CLN3-249ENST00000636685 TRIOO75962 3097 aa17.48■□□□□ 0.39
CLN3-249ENST00000636685 CFAP54Q96N23 3096 aa17.47■□□□□ 0.39
CLN3-249ENST00000636685 ASB14A6NK59 587 aa17.47■□□□□ 0.39
CLN3-249ENST00000636685 MBD4O95243 580 aa17.47■□□□□ 0.39
CLN3-249ENST00000636685 TRIM27P14373 513 aa17.47■□□□□ 0.39
CLN3-249ENST00000636685 KCNJ6P48051 423 aa17.47■□□□□ 0.39
CLN3-249ENST00000636685 TTF1Q15361 905 aaPredicted RBP17.47■□□□□ 0.39
CLN3-249ENST00000636685 IQSEC1Q6DN90 963 aa17.47■□□□□ 0.39
CLN3-249ENST00000636685 RETREG2Q8NC44 543 aa17.47■□□□□ 0.39
CLN3-249ENST00000636685 ZBED2Q9BTP6 218 aa17.47■□□□□ 0.39
CLN3-249ENST00000636685 C1orf115Q9H7X2 142 aa17.47■□□□□ 0.39
CLN3-249ENST00000636685 A1CFQ9NQ94 594 aaKnown RBP17.47■□□□□ 0.39
CLN3-249ENST00000636685 Q9Y3F1 56 aa17.47■□□□□ 0.39
CLN3-249ENST00000636685 LCTP09848 1927 aa17.47■□□□□ 0.39
CLN3-249ENST00000636685 H3BQ06 376 aaPredicted RBP17.46■□□□□ 0.39
CLN3-249ENST00000636685 BAIAP3O94812 1187 aa17.46■□□□□ 0.39
CLN3-249ENST00000636685 WDR5P61964 334 aaKnown RBP17.46■□□□□ 0.39
CLN3-249ENST00000636685 FAM47CQ5HY64 1035 aa17.46■□□□□ 0.39
CLN3-249ENST00000636685 AACSQ86V21 672 aa17.46■□□□□ 0.39
CLN3-249ENST00000636685 CLUAP1Q96AJ1 413 aa17.46■□□□□ 0.39
CLN3-249ENST00000636685 ACAD9Q9H845 621 aa17.46■□□□□ 0.39
CLN3-249ENST00000636685 TECTAO75443 2155 aa17.46■□□□□ 0.39
CLN3-249ENST00000636685 GOLIM4O00461 696 aa17.45■□□□□ 0.38
CLN3-249ENST00000636685 PITPNM1O00562 1244 aa17.45■□□□□ 0.38
CLN3-249ENST00000636685 MYL3P08590 195 aa17.45■□□□□ 0.38
CLN3-249ENST00000636685 ERVK-21P61565 698 aa17.45■□□□□ 0.38
CLN3-249ENST00000636685 DEFB103AP81534 67 aa17.45■□□□□ 0.38
CLN3-249ENST00000636685 PURAQ00577 322 aaKnown RBP17.45■□□□□ 0.38
CLN3-249ENST00000636685 NBPF20Q3BBV1 942 aa17.45■□□□□ 0.38
CLN3-249ENST00000636685 AMOTL1Q8IY63 956 aa17.45■□□□□ 0.38
CLN3-249ENST00000636685 TGS1Q96RS0 853 aaKnown RBP17.45■□□□□ 0.38
CLN3-249ENST00000636685 POLR3EQ9NVU0 708 aa17.45■□□□□ 0.38
CLN3-249ENST00000636685 COG6Q9Y2V7 657 aa17.45■□□□□ 0.38
CLN3-249ENST00000636685 LINC01553A4QN01 128 aa17.44■□□□□ 0.38
CLN3-249ENST00000636685 ST18O60284 1047 aa17.44■□□□□ 0.38
CLN3-249ENST00000636685 OAZ1P54368 228 aa17.44■□□□□ 0.38
CLN3-249ENST00000636685 ZP2Q05996 745 aa17.44■□□□□ 0.38
CLN3-249ENST00000636685 PUS10Q3MIT2 529 aaKnown RBP17.44■□□□□ 0.38
CLN3-249ENST00000636685 KIAA1211Q6ZU35 1233 aa17.44■□□□□ 0.38
CLN3-249ENST00000636685 PRSS33Q8NF86 280 aa17.44■□□□□ 0.38
CLN3-249ENST00000636685 NEK9Q8TD19 979 aa17.44■□□□□ 0.38
CLN3-249ENST00000636685 DNAJC2Q99543 621 aaKnown RBP17.44■□□□□ 0.38
CLN3-249ENST00000636685 RNF146Q9NTX7 359 aa17.44■□□□□ 0.38
CLN3-249ENST00000636685 NYAP2Q9P242 653 aa17.44■□□□□ 0.38
CLN3-249ENST00000636685 FEM1BQ9UK73 627 aa17.44■□□□□ 0.38
CLN3-249ENST00000636685 SPTBN4Q9H254 2564 aa17.44■□□□□ 0.38
CLN3-249ENST00000636685 MYO7AQ13402 2215 aa17.44■□□□□ 0.38
CLN3-249ENST00000636685 RBAK-RBAKDNI3L0D1 243 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms