RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 SREBF2Q12772 1141 aa23.65■■□□□ 1.38
CLN3-245ENST00000636172 NOGQ13253 232 aa23.65■■□□□ 1.38
CLN3-245ENST00000636172 IFNL1Q8IU54 200 aa23.65■■□□□ 1.38
CLN3-245ENST00000636172 DIS3L2Q8IYB7 885 aaKnown RBP23.65■■□□□ 1.38
CLN3-245ENST00000636172 DAGLBQ8NCG7 672 aa23.65■■□□□ 1.38
CLN3-245ENST00000636172 OXER1Q8TDS5 423 aa23.65■■□□□ 1.38
CLN3-245ENST00000636172 ZCCHC17Q9NP64 241 aaKnown RBP23.65■■□□□ 1.38
CLN3-245ENST00000636172 PNMA2Q9UL42 364 aa23.65■■□□□ 1.38
CLN3-245ENST00000636172 PCDHA4Q9UN74 947 aa23.65■■□□□ 1.38
CLN3-245ENST00000636172 KIF28PB7ZC32 967 aa23.64■■□□□ 1.38
CLN3-245ENST00000636172 OPLAHO14841 1288 aa23.64■■□□□ 1.38
CLN3-245ENST00000636172 RESTQ13127 1097 aa23.64■■□□□ 1.38
CLN3-245ENST00000636172 SAFBQ15424 915 aaKnown RBP eCLIP23.64■■□□□ 1.38
CLN3-245ENST00000636172 MCTP1Q6DN14 999 aa23.64■■□□□ 1.38
CLN3-245ENST00000636172 SNRNP48Q6IEG0 339 aaKnown RBP23.64■■□□□ 1.38
CLN3-245ENST00000636172 GALNT17Q6IS24 598 aa23.64■■□□□ 1.38
CLN3-245ENST00000636172 PARK7Q99497 189 aaKnown RBP23.64■■□□□ 1.38
CLN3-245ENST00000636172 PAGR1Q9BTK6 254 aa23.64■■□□□ 1.38
CLN3-245ENST00000636172 TEX13BQ9BXU2 312 aa23.64■■□□□ 1.38
CLN3-245ENST00000636172 C6orf50Q9HD87 102 aa23.64■■□□□ 1.38
CLN3-245ENST00000636172 RBPJLQ9UBG7 517 aa23.64■■□□□ 1.38
CLN3-245ENST00000636172 BTBD18B2RXH4 712 aa23.64■■□□□ 1.37
CLN3-245ENST00000636172 AOC2O75106 756 aa23.64■■□□□ 1.37
CLN3-245ENST00000636172 F13A1P00488 732 aa23.64■■□□□ 1.37
CLN3-245ENST00000636172 KRT2P35908 639 aa23.64■■□□□ 1.37
CLN3-245ENST00000636172 TM4SF4P48230 202 aa23.64■■□□□ 1.37
CLN3-245ENST00000636172 ADCY7P51828 1080 aa23.64■■□□□ 1.37
CLN3-245ENST00000636172 SMCR8Q8TEV9 937 aaPredicted RBP23.64■■□□□ 1.37
CLN3-245ENST00000636172 TXNRD2Q9NNW7 524 aa23.64■■□□□ 1.37
CLN3-245ENST00000636172 RIC8AQ9NPQ8 531 aa23.64■■□□□ 1.37
CLN3-245ENST00000636172 MRPL11Q9Y3B7 192 aaKnown RBP23.64■■□□□ 1.37
CLN3-245ENST00000636172 ALAS1P13196 640 aa23.63■■□□□ 1.37
CLN3-245ENST00000636172 GNA11P29992 359 aa23.63■■□□□ 1.37
CLN3-245ENST00000636172 STAT3P40763 770 aa23.63■■□□□ 1.37
CLN3-245ENST00000636172 NR5A1Q13285 461 aa23.63■■□□□ 1.37
CLN3-245ENST00000636172 BLIDQ8IZY5 108 aa23.63■■□□□ 1.37
CLN3-245ENST00000636172 GTF3C2Q8WUA4 911 aaPredicted RBP23.63■■□□□ 1.37
CLN3-245ENST00000636172 PSTPIP2Q9H939 334 aa23.63■■□□□ 1.37
CLN3-245ENST00000636172 BRMS1Q9HCU9 246 aa23.63■■□□□ 1.37
CLN3-245ENST00000636172 RABGAP1Q9Y3P9 1069 aa23.63■■□□□ 1.37
CLN3-245ENST00000636172 RIPK3Q9Y572 518 aa23.63■■□□□ 1.37
CLN3-245ENST00000636172 RBBP6Q7Z6E9 1792 aaKnown RBP23.62■■□□□ 1.37
CLN3-245ENST00000636172 M0R2N6 131 aa23.62■■□□□ 1.37
CLN3-245ENST00000636172 U2AF2P26368 475 aaKnown RBP eCLIP23.62■■□□□ 1.37
CLN3-245ENST00000636172 PLS1Q14651 629 aa23.62■■□□□ 1.37
CLN3-245ENST00000636172 CLEC4DQ8WXI8 215 aa23.62■■□□□ 1.37
CLN3-245ENST00000636172 CUL5Q93034 780 aa23.62■■□□□ 1.37
CLN3-245ENST00000636172 TNFRSF25Q93038 417 aa23.62■■□□□ 1.37
CLN3-245ENST00000636172 SPATC1LQ9H0A9 340 aa23.62■■□□□ 1.37
CLN3-245ENST00000636172 FOXP1Q9H334 677 aaPredicted RBP23.62■■□□□ 1.37
CLN3-245ENST00000636172 HOMER2Q9NSB8 354 aa23.62■■□□□ 1.37
CLN3-245ENST00000636172 MUM1L1Q5H9M0 696 aa23.61■■□□□ 1.37
CLN3-245ENST00000636172 NFIBO00712 420 aa23.6■■□□□ 1.37
CLN3-245ENST00000636172 GCLCP48506 637 aaPredicted RBP23.6■■□□□ 1.37
CLN3-245ENST00000636172 MRPL12P52815 198 aaKnown RBP23.6■■□□□ 1.37
CLN3-245ENST00000636172 GNL2Q13823 731 aaKnown RBP23.6■■□□□ 1.37
CLN3-245ENST00000636172 RIOX2Q8IUF8 465 aa23.6■■□□□ 1.37
CLN3-245ENST00000636172 BICD2Q8TD16 824 aa23.6■■□□□ 1.37
CLN3-245ENST00000636172 RASGRP4Q8TDF6 673 aa23.6■■□□□ 1.37
CLN3-245ENST00000636172 TRERF1Q96PN7 1200 aa23.6■■□□□ 1.37
CLN3-245ENST00000636172 RNF146Q9NTX7 359 aa23.6■■□□□ 1.37
CLN3-245ENST00000636172 ADGRA2Q96PE1 1338 aa23.6■■□□□ 1.37
CLN3-245ENST00000636172 VEGFBP49765 207 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 TAF1CQ15572 869 aaPredicted RBP23.59■■□□□ 1.37
CLN3-245ENST00000636172 UBE2SQ16763 222 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 TKFCQ3LXA3 575 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 NOSTRINQ8IVI9 506 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 REXO1Q8N1G1 1221 aaKnown RBP23.59■■□□□ 1.37
CLN3-245ENST00000636172 JMYQ8N9B5 988 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 GLT8D2Q9H1C3 349 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 ZSCAN16Q9H4T2 348 aaPredicted RBP23.59■■□□□ 1.37
CLN3-245ENST00000636172 PCDHA6Q9UN73 950 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 PCDHA8Q9Y5H6 950 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 MYH15Q9Y2K3 1946 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 MEIS2O14770 477 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 CLK2P49760 499 aaKnown RBP23.59■■□□□ 1.37
CLN3-245ENST00000636172 ERVK-9P63128 1117 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 ERVK-24P63145 666 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 Q3C1V9 767 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 NOM1Q5C9Z4 860 aaKnown RBP23.59■■□□□ 1.37
CLN3-245ENST00000636172 USP17L6PQ6QN14 398 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 BRAPQ7Z569 592 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 ANKRD13CQ8N6S4 541 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 TBC1D5Q92609 795 aa23.59■■□□□ 1.37
CLN3-245ENST00000636172 MOV10L1Q9BXT6 1211 aaKnown RBP23.59■■□□□ 1.37
CLN3-245ENST00000636172 BIN2Q9UBW5 565 aaPredicted RBP23.59■■□□□ 1.37
CLN3-245ENST00000636172 THSD7BQ9C0I4 1608 aa23.58■■□□□ 1.37
CLN3-245ENST00000636172 EARS2Q5JPH6 523 aaKnown RBP23.58■■□□□ 1.36
CLN3-245ENST00000636172 TNPO1Q92973 898 aaKnown RBP23.58■■□□□ 1.36
CLN3-245ENST00000636172 TMEM260Q9NX78 707 aa23.58■■□□□ 1.36
CLN3-245ENST00000636172 MORF4L1Q9UBU8 362 aa23.58■■□□□ 1.36
CLN3-245ENST00000636172 FAM205CA6NFA0 338 aa23.57■■□□□ 1.36
CLN3-245ENST00000636172 PIK3CDO00329 1044 aa23.57■■□□□ 1.36
CLN3-245ENST00000636172 FAM173BQ6P4H8 233 aa23.57■■□□□ 1.36
CLN3-245ENST00000636172 TEX2Q8IWB9 1127 aa23.57■■□□□ 1.36
CLN3-245ENST00000636172 REM2Q8IYK8 340 aaPredicted RBP23.57■■□□□ 1.36
CLN3-245ENST00000636172 GPRC5AQ8NFJ5 357 aa23.57■■□□□ 1.36
CLN3-245ENST00000636172 CFBP00751 764 aa23.56■■□□□ 1.36
CLN3-245ENST00000636172 HOXA13P31271 388 aaPredicted RBP23.56■■□□□ 1.36
CLN3-245ENST00000636172 HSD17B4P51659 736 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms