RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 LRRC45Q96CN5 670 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 MS4A14Q96JA4 679 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 HSD3B7Q9H2F3 369 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 SLC24A3Q9HC58 644 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 FAM53CQ9NYF3 392 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 SAMD15Q9P1V8 674 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 PACSIN2Q9UNF0 486 aaPredicted RBP12.22□□□□□ -0.45
CLN3-244ENST00000636147 ANKARQ7Z5J8 1434 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 PLEKHG2Q9H7P9 1386 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 GSTTP1A0A1W2PQM5 241 aa12.21□□□□□ -0.45
CLN3-244ENST00000636147 TMEM110-MUSTN1A8MSY1 372 aa12.21□□□□□ -0.45
CLN3-244ENST00000636147 EIF3HO15372 352 aaKnown RBP eCLIP12.21□□□□□ -0.45
CLN3-244ENST00000636147 CYP27B1O15528 508 aa12.21□□□□□ -0.45
CLN3-244ENST00000636147 ARID4AP29374 1257 aaPredicted RBP12.21□□□□□ -0.45
CLN3-244ENST00000636147 KLK7P49862 253 aa12.21□□□□□ -0.45
CLN3-244ENST00000636147 NEDD9Q14511 834 aa12.21□□□□□ -0.45
CLN3-244ENST00000636147 SNCBQ16143 134 aa12.21□□□□□ -0.45
CLN3-244ENST00000636147 CNNM4Q6P4Q7 775 aa12.21□□□□□ -0.45
CLN3-244ENST00000636147 FNBP4Q8N3X1 1017 aaPredicted RBP12.21□□□□□ -0.45
CLN3-244ENST00000636147 PROCA1Q8NCQ7 364 aaPredicted RBP12.21□□□□□ -0.45
CLN3-244ENST00000636147 SEMA3EO15041 775 aa12.21□□□□□ -0.45
CLN3-244ENST00000636147 IFNAR2P48551 515 aa12.21□□□□□ -0.45
CLN3-244ENST00000636147 POLR2FP61218 127 aaKnown RBP12.21□□□□□ -0.45
CLN3-244ENST00000636147 DCAF17Q5H9S7 520 aaPredicted RBP12.21□□□□□ -0.45
CLN3-244ENST00000636147 VIPAS39Q9H9C1 493 aa12.21□□□□□ -0.45
CLN3-244ENST00000636147 GOLGA8HP0CJ92 632 aa12.21□□□□□ -0.46
CLN3-244ENST00000636147 CTSWP56202 376 aa12.21□□□□□ -0.46
CLN3-244ENST00000636147 KRT79Q5XKE5 535 aa12.21□□□□□ -0.46
CLN3-244ENST00000636147 TTLL11Q8NHH1 800 aa12.21□□□□□ -0.46
CLN3-244ENST00000636147 MGARPQ8TDB4 240 aa12.21□□□□□ -0.46
CLN3-244ENST00000636147 PPP1R3GB7ZBB8 358 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 GYG1P46976 350 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 APBA1Q02410 837 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 RASGRF1Q13972 1273 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 UBE4AQ14139 1066 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 GKAP1Q5VSY0 366 aaPredicted RBP12.2□□□□□ -0.46
CLN3-244ENST00000636147 SFMBT2Q5VUG0 894 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 HIBCHQ6NVY1 386 aaPredicted RBP12.2□□□□□ -0.46
CLN3-244ENST00000636147 EMBQ6PCB8 327 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 TMC4Q7Z404 712 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 CTNNBL1Q8WYA6 563 aaPredicted RBP12.2□□□□□ -0.46
CLN3-244ENST00000636147 P2RX5Q93086 422 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 OSBPL9Q96SU4 736 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 KCNK9Q9NPC2 374 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 STK38LQ9Y2H1 464 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 CDHR2Q9BYE9 1310 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 G3V3G9 751 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 CHUKO15111 745 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 DYNLL1P63167 89 aaKnown RBP12.2□□□□□ -0.46
CLN3-244ENST00000636147 IFI16Q16666 785 aaKnown RBP12.2□□□□□ -0.46
CLN3-244ENST00000636147 CCDC152Q4G0S7 254 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 DCAF8Q5TAQ9 597 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 SGMS1Q86VZ5 419 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 ZBTB38Q8NAP3 1195 aaPredicted RBP12.2□□□□□ -0.46
CLN3-244ENST00000636147 HDAC7Q8WUI4 952 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 HPS3Q969F9 1004 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 CD248Q9HCU0 757 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 SEC31BQ9NQW1 1179 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 CPDO75976 1380 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 TSPOAP1O95153 1857 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 FRMPD1Q5SYB0 1578 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 DPYDQ12882 1025 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 ALS2CLQ60I27 953 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 CCDC170Q8IYT3 715 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 CCDC155Q8N6L0 562 aa12.2□□□□□ -0.46
CLN3-244ENST00000636147 NOVA2Q9UNW9 492 aaKnown RBP12.2□□□□□ -0.46
CLN3-244ENST00000636147 PDE8AO60658 829 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 KIF4AO95239 1232 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 PCCAP05165 728 aaPredicted RBP12.19□□□□□ -0.46
CLN3-244ENST00000636147 WDR93Q6P2C0 686 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 LSM14BQ9BX40 385 aaKnown RBP12.19□□□□□ -0.46
CLN3-244ENST00000636147 AP1M1Q9BXS5 423 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 DLG5Q8TDM6 1919 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 MEFVO15553 781 aaPredicted RBP12.19□□□□□ -0.46
CLN3-244ENST00000636147 GCKP35557 465 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 LIMA1Q9UHB6 759 aaKnown RBP12.19□□□□□ -0.46
CLN3-244ENST00000636147 PLAAQ9Y263 795 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.19□□□□□ -0.46
CLN3-244ENST00000636147 ABCA9Q8IUA7 1624 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 KRIT1O00522 736 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 PLEKP08567 350 aaPredicted RBP12.19□□□□□ -0.46
CLN3-244ENST00000636147 SSR1P43307 286 aaKnown RBP12.19□□□□□ -0.46
CLN3-244ENST00000636147 TFAP4Q01664 338 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 GFPT1Q06210 699 aaPredicted RBP12.19□□□□□ -0.46
CLN3-244ENST00000636147 PPP2R5BQ15173 497 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 TRAPPC11Q7Z392 1133 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 PEX26Q7Z412 305 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 TBC1D5Q92609 795 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 KANSL2Q9H9L4 492 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 ADAMTS1Q9UHI8 967 aa12.19□□□□□ -0.46
CLN3-244ENST00000636147 NIP7Q9Y221 180 aaKnown RBP eCLIP12.19□□□□□ -0.46
CLN3-244ENST00000636147 NMT2O60551 498 aa12.18□□□□□ -0.46
CLN3-244ENST00000636147 MYBL2P10244 700 aa12.18□□□□□ -0.46
CLN3-244ENST00000636147 LONP1P36776 959 aaKnown RBP12.18□□□□□ -0.46
CLN3-244ENST00000636147 CARSP49589 748 aaKnown RBP12.18□□□□□ -0.46
CLN3-244ENST00000636147 C6orf50Q9HD87 102 aa12.18□□□□□ -0.46
CLN3-244ENST00000636147 SNX12Q9UMY4 172 aa12.18□□□□□ -0.46
CLN3-244ENST00000636147 PPP1R12BO60237 982 aaPredicted RBP12.18□□□□□ -0.46
CLN3-244ENST00000636147 ASIC2Q16515 512 aa12.18□□□□□ -0.46
CLN3-244ENST00000636147 GIGYF2Q6Y7W6 1299 aaKnown RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms