RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 RIPK3Q9Y572 518 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 ZNFX1Q9P2E3 1918 aaKnown RBP22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 CPLX1O14810 134 aa22.13■■□□□ 1.13
SQSTM1-216ENST00000626660 ADD1P35611 737 aaKnown RBP22.13■■□□□ 1.13
SQSTM1-216ENST00000626660 PKN2Q16513 984 aaKnown RBP22.13■■□□□ 1.13
SQSTM1-216ENST00000626660 USH1GQ495M9 461 aa22.13■■□□□ 1.13
SQSTM1-216ENST00000626660 ABRAQ8N0Z2 381 aa22.13■■□□□ 1.13
SQSTM1-216ENST00000626660 MMP19Q99542 508 aa22.13■■□□□ 1.13
SQSTM1-216ENST00000626660 FAM217BQ9NTX9 383 aaPredicted RBP22.13■■□□□ 1.13
SQSTM1-216ENST00000626660 ABCB11O95342 1321 aa22.12■■□□□ 1.13
SQSTM1-216ENST00000626660 PRKCZQ05513 592 aa22.12■■□□□ 1.13
SQSTM1-216ENST00000626660 NCOA5Q9HCD5 579 aaKnown RBP22.12■■□□□ 1.13
SQSTM1-216ENST00000626660 LIMCH1Q9UPQ0 1083 aa22.12■■□□□ 1.13
SQSTM1-216ENST00000626660 CNTNAP5Q8WYK1 1306 aa22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 ZNF236Q9UL36 1845 aa22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 PFKFB2O60825 505 aa22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 RGS2P41220 211 aa22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 FLT3LGP49771 235 aa22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 GRB14Q14449 540 aa22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 MORN1Q5T089 497 aa22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 ANKRD35Q8N283 1001 aa22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 RAET1EQ8TD07 263 aa22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 DDX11Q96FC9 970 aa22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 SLC5A4Q9NY91 659 aa22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 GJD2Q9UKL4 321 aa22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 PTPN22Q9Y2R2 807 aa22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 MRPL11Q9Y3B7 192 aaKnown RBP22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 PCDHA1Q9Y5I3 950 aa22.11■■□□□ 1.13
SQSTM1-216ENST00000626660 TAL1P17542 331 aaPredicted RBP22.1■■□□□ 1.13
SQSTM1-216ENST00000626660 ADORA2AP29274 412 aa22.1■■□□□ 1.13
SQSTM1-216ENST00000626660 AKAP17AQ02040 695 aaKnown RBP22.1■■□□□ 1.13
SQSTM1-216ENST00000626660 FUT2Q10981 343 aa22.1■■□□□ 1.13
SQSTM1-216ENST00000626660 MAP2K5Q13163 448 aa22.1■■□□□ 1.13
SQSTM1-216ENST00000626660 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.1■■□□□ 1.131e-6■■□□□ 14.4
SQSTM1-216ENST00000626660 RBM27Q9P2N5 1060 aaKnown RBP22.1■■□□□ 1.13
SQSTM1-216ENST00000626660 GABRQQ9UN88 632 aa22.1■■□□□ 1.13
SQSTM1-216ENST00000626660 PFASO15067 1338 aa22.09■■□□□ 1.13
SQSTM1-216ENST00000626660 CDKL5O76039 1030 aa22.09■■□□□ 1.13
SQSTM1-216ENST00000626660 IFNAR1P17181 557 aa22.09■■□□□ 1.13
SQSTM1-216ENST00000626660 MUM1L1Q5H9M0 696 aa22.09■■□□□ 1.13
SQSTM1-216ENST00000626660 FBXO46Q6PJ61 603 aaPredicted RBP22.09■■□□□ 1.13
SQSTM1-216ENST00000626660 DPP9Q86TI2 863 aa22.09■■□□□ 1.13
SQSTM1-216ENST00000626660 ZSCAN31Q96LW9 406 aaPredicted RBP22.09■■□□□ 1.13
SQSTM1-216ENST00000626660 V9GY48 417 aaPredicted RBP22.09■■□□□ 1.13
SQSTM1-216ENST00000626660 hCG_1642624A0A1W2PR95 340 aa22.08■■□□□ 1.13
SQSTM1-216ENST00000626660 PPP1R11O60927 126 aaPredicted RBP22.08■■□□□ 1.13
SQSTM1-216ENST00000626660 SCRN1Q12765 414 aa22.08■■□□□ 1.13
SQSTM1-216ENST00000626660 IRF5Q13568 498 aa22.08■■□□□ 1.13
SQSTM1-216ENST00000626660 ME3Q16798 604 aa22.08■■□□□ 1.13
SQSTM1-216ENST00000626660 NSMFQ6X4W1 530 aa22.08■■□□□ 1.13
SQSTM1-216ENST00000626660 TRIM22Q8IYM9 498 aa22.08■■□□□ 1.13
SQSTM1-216ENST00000626660 USP6NLQ92738 828 aa22.08■■□□□ 1.13
SQSTM1-216ENST00000626660 APBA2Q99767 749 aa22.08■■□□□ 1.13
SQSTM1-216ENST00000626660 RBBP6Q7Z6E9 1792 aaKnown RBP22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 NFIBO00712 420 aa22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 CYP2B6P20813 491 aa22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 MCM2P49736 904 aa22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 NTRK3Q16288 839 aa22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 MCF2L2Q86YR7 1114 aa22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 CLEC4DQ8WXI8 215 aa22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 GTF3C6Q969F1 213 aa22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 SLC26A6Q9BXS9 759 aa22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 RNF26Q9BY78 433 aaPredicted RBP22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 MAF1Q9H063 256 aa22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 A1CFQ9NQ94 594 aaKnown RBP22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 SH2B1Q9NRF2 756 aaPredicted RBP22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 PTCH2Q9Y6C5 1203 aa22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 PLXNA1Q9UIW2 1896 aa22.07■■□□□ 1.12
SQSTM1-216ENST00000626660 PRPF3O43395 683 aaKnown RBP22.06■■□□□ 1.12
SQSTM1-216ENST00000626660 LARGE1O95461 756 aa22.06■■□□□ 1.12
SQSTM1-216ENST00000626660 XRCC5P13010 732 aaKnown RBP22.06■■□□□ 1.12
SQSTM1-216ENST00000626660 SSRP1Q08945 709 aaKnown RBP22.06■■□□□ 1.12
SQSTM1-216ENST00000626660 HEATR3Q7Z4Q2 680 aa22.06■■□□□ 1.12
SQSTM1-216ENST00000626660 TRMT44Q8IYL2 757 aaKnown RBP22.06■■□□□ 1.12
SQSTM1-216ENST00000626660 NECAB1Q8N987 351 aa22.06■■□□□ 1.12
SQSTM1-216ENST00000626660 PHKBQ93100 1093 aa22.06■■□□□ 1.12
SQSTM1-216ENST00000626660 PTPDC1A2A3K4 754 aa22.05■■□□□ 1.12
SQSTM1-216ENST00000626660 POTEB2H3BUK9 544 aa22.05■■□□□ 1.12
SQSTM1-216ENST00000626660 hCG_1984214I3L0E3 225 aa22.05■■□□□ 1.12
SQSTM1-216ENST00000626660 ADCY3O60266 1144 aa22.05■■□□□ 1.12
SQSTM1-216ENST00000626660 PGK2P07205 417 aa22.05■■□□□ 1.12
SQSTM1-216ENST00000626660 HOXC6P09630 235 aa22.05■■□□□ 1.12
SQSTM1-216ENST00000626660 RNF207Q6ZRF8 634 aa22.05■■□□□ 1.12
SQSTM1-216ENST00000626660 ZNF713Q8N859 430 aaPredicted RBP22.05■■□□□ 1.12
SQSTM1-216ENST00000626660 SLAIN1Q8ND83 568 aa22.05■■□□□ 1.12
SQSTM1-216ENST00000626660 RGS22Q8NE09 1264 aa22.05■■□□□ 1.12
SQSTM1-216ENST00000626660 CYP39A1Q9NYL5 469 aa22.05■■□□□ 1.12
SQSTM1-216ENST00000626660 PCDH10Q9P2E7 1040 aa22.05■■□□□ 1.12
SQSTM1-216ENST00000626660 COBLO75128 1261 aa22.04■■□□□ 1.12
SQSTM1-216ENST00000626660 PXYLP1Q8TE99 480 aa22.04■■□□□ 1.12
SQSTM1-216ENST00000626660 DNAJC25-GNG10A0A024R161 153 aa22.03■■□□□ 1.12
SQSTM1-216ENST00000626660 SCG2P13521 617 aa22.03■■□□□ 1.12
SQSTM1-216ENST00000626660 GRK4P32298 578 aa22.03■■□□□ 1.12
SQSTM1-216ENST00000626660 BAATQ14032 418 aaPredicted RBP22.03■■□□□ 1.12
SQSTM1-216ENST00000626660 PFKFB3Q16875 520 aaPredicted RBP22.03■■□□□ 1.12
SQSTM1-216ENST00000626660 SLC9C1Q4G0N8 1177 aa22.03■■□□□ 1.12
SQSTM1-216ENST00000626660 SAMD3Q8N6K7 520 aa22.03■■□□□ 1.12
SQSTM1-216ENST00000626660 GPKOWQ92917 476 aaPredicted RBP eCLIP22.03■■□□□ 1.12
SQSTM1-216ENST00000626660 BIN2Q9UBW5 565 aaPredicted RBP22.03■■□□□ 1.12
SQSTM1-216ENST00000626660 DIS3Q9Y2L1 958 aaKnown RBP22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms