RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 RANBP6O60518 1105 aaKnown RBP13.56□□□□□ -0.24
CPNE3-210ENST00000621245 PQBP1O60828 265 aaKnown RBP13.56□□□□□ -0.24
CPNE3-210ENST00000621245 IGHDP01880 384 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 FGAP02671 866 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 NOVP48745 357 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 STAT2P52630 851 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 HAND2P61296 217 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 ACVR2BQ13705 512 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 ARMCX2Q7L311 632 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 TBC1D10CQ8IV04 446 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 CCDC144CPQ8IYA2 1237 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 ANKRD35Q8N283 1001 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 FAM133AQ8N9E0 248 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 FAM161BQ96MY7 647 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 A1CFQ9NQ94 594 aaKnown RBP13.56□□□□□ -0.24
CPNE3-210ENST00000621245 RNF146Q9NTX7 359 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 PRR12Q9ULL5 1215 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 CNPY2Q9Y2B0 182 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 XIRP2A4UGR9 3374 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 ORC4O43929 436 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 SLC3A2P08195 630 aaKnown RBP13.55□□□□□ -0.24
CPNE3-210ENST00000621245 FGRP09769 529 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 SLC16A2P36021 539 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 SLC1A4P43007 532 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 ACLYP53396 1101 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 OAZ1P54368 228 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 IKQ13123 557 aaPredicted RBP13.55□□□□□ -0.24
CPNE3-210ENST00000621245 CCDC144BQ3MJ40 725 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 RRP12Q5JTH9 1297 aaKnown RBP13.55□□□□□ -0.24
CPNE3-210ENST00000621245 C1orf53Q5VUE5 145 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 GPR153Q6NV75 609 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 RNF180Q86T96 592 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 EXOC6Q8TAG9 804 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 STAG1Q8WVM7 1258 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 GUCD1Q96NT3 240 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 HELLSQ9NRZ9 838 aa13.55□□□□□ -0.24
CPNE3-210ENST00000621245 CTDP1Q9Y5B0 961 aaPredicted RBP13.55□□□□□ -0.24
CPNE3-210ENST00000621245 FRMPD2Q68DX3 1309 aaPredicted RBP13.55□□□□□ -0.24
CPNE3-210ENST00000621245 HSPD1P10809 573 aaKnown RBP13.54□□□□□ -0.24
CPNE3-210ENST00000621245 ALAS1P13196 640 aa13.54□□□□□ -0.24
CPNE3-210ENST00000621245 FAAP100Q0VG06 881 aa13.54□□□□□ -0.24
CPNE3-210ENST00000621245 ALX1Q15699 326 aa13.54□□□□□ -0.24
CPNE3-210ENST00000621245 KCNA10Q16322 511 aa13.54□□□□□ -0.24
CPNE3-210ENST00000621245 SMC5Q8IY18 1101 aa13.54□□□□□ -0.24
CPNE3-210ENST00000621245 MSL3Q8N5Y2 521 aaKnown RBP13.54□□□□□ -0.24
CPNE3-210ENST00000621245 CHST13Q8NET6 341 aa13.54□□□□□ -0.24
CPNE3-210ENST00000621245 TRERF1Q96PN7 1200 aa13.54□□□□□ -0.24
CPNE3-210ENST00000621245 ACAD9Q9H845 621 aa13.54□□□□□ -0.24
CPNE3-210ENST00000621245 PRKAG2Q9UGJ0 569 aa13.54□□□□□ -0.24
CPNE3-210ENST00000621245 FAM184BQ9ULE4 1060 aa13.54□□□□□ -0.24
CPNE3-210ENST00000621245 NEDD4P46934 1319 aa13.54□□□□□ -0.24
CPNE3-210ENST00000621245 CCDC171Q6TFL3 1326 aa13.54□□□□□ -0.24
CPNE3-210ENST00000621245 TRANK1O15050 2925 aa13.54□□□□□ -0.24
CPNE3-210ENST00000621245 SCN5AQ14524 2016 aa13.53□□□□□ -0.24
CPNE3-210ENST00000621245 POTEB2H3BUK9 544 aa13.53□□□□□ -0.24
CPNE3-210ENST00000621245 DUSP11O75319 330 aaKnown RBP13.53□□□□□ -0.24
CPNE3-210ENST00000621245 CLTBP09497 229 aa13.53□□□□□ -0.24
CPNE3-210ENST00000621245 BEX3Q00994 111 aa13.53□□□□□ -0.24
CPNE3-210ENST00000621245 CCDC96Q2M329 555 aa13.53□□□□□ -0.24
CPNE3-210ENST00000621245 MCMDC2Q4G0Z9 681 aa13.53□□□□□ -0.24
CPNE3-210ENST00000621245 RCSD1Q6JBY9 416 aa13.53□□□□□ -0.24
CPNE3-210ENST00000621245 FAM160B2Q86V87 743 aa13.53□□□□□ -0.24
CPNE3-210ENST00000621245 PLEKHM2Q8IWE5 1019 aa13.53□□□□□ -0.24
CPNE3-210ENST00000621245 TMEM47Q9BQJ4 181 aa13.53□□□□□ -0.24
CPNE3-210ENST00000621245 UPF3AQ9H1J1 476 aaKnown RBP13.53□□□□□ -0.24
CPNE3-210ENST00000621245 PDGFCQ9NRA1 345 aa13.53□□□□□ -0.24
CPNE3-210ENST00000621245 TOMM22Q9NS69 142 aa13.53□□□□□ -0.24
CPNE3-210ENST00000621245 TRIM6-TRIM34B2RNG4 842 aa13.52□□□□□ -0.25
CPNE3-210ENST00000621245 KIAA0355O15063 1070 aa13.52□□□□□ -0.25
CPNE3-210ENST00000621245 C6orf222P0C671 652 aaPredicted RBP13.52□□□□□ -0.25
CPNE3-210ENST00000621245 FBXO16Q8IX29 292 aaPredicted RBP13.52□□□□□ -0.25
CPNE3-210ENST00000621245 CHURC1Q8WUH1 139 aa13.52□□□□□ -0.25
CPNE3-210ENST00000621245 RILPL2Q969X0 211 aa13.52□□□□□ -0.25
CPNE3-210ENST00000621245 PHF12Q96QT6 1004 aa13.52□□□□□ -0.25
CPNE3-210ENST00000621245 IL25Q9H293 177 aa13.52□□□□□ -0.25
CPNE3-210ENST00000621245 RANBP17Q9H2T7 1088 aaKnown RBP13.52□□□□□ -0.25
CPNE3-210ENST00000621245 CPVLQ9H3G5 476 aa13.52□□□□□ -0.25
CPNE3-210ENST00000621245 ABHD16BQ9H3Z7 469 aa13.52□□□□□ -0.25
CPNE3-210ENST00000621245 GPCPD1Q9NPB8 672 aa13.52□□□□□ -0.25
CPNE3-210ENST00000621245 STARD7Q9NQZ5 370 aa13.52□□□□□ -0.25
CPNE3-210ENST00000621245 CYP39A1Q9NYL5 469 aa13.52□□□□□ -0.25
CPNE3-210ENST00000621245 FBXO40Q9UH90 709 aa13.52□□□□□ -0.25
CPNE3-210ENST00000621245 KIAA1217Q5T5P2 1943 aa13.52□□□□□ -0.25
CPNE3-210ENST00000621245 ZMYM6O95789 1325 aa13.51□□□□□ -0.25
CPNE3-210ENST00000621245 RBAK-RBAKDNI3L0D1 243 aa13.51□□□□□ -0.25
CPNE3-210ENST00000621245 NFIBO00712 420 aa13.51□□□□□ -0.25
CPNE3-210ENST00000621245 PLA2G6O60733 806 aa13.51□□□□□ -0.25
CPNE3-210ENST00000621245 ASGR1P07306 291 aa13.51□□□□□ -0.25
CPNE3-210ENST00000621245 CST5P28325 142 aaPredicted RBP13.51□□□□□ -0.25
CPNE3-210ENST00000621245 GJA9P57773 515 aa13.51□□□□□ -0.25
CPNE3-210ENST00000621245 SLC30A10Q6XR72 485 aa13.51□□□□□ -0.25
CPNE3-210ENST00000621245 EEPD1Q7L9B9 569 aa13.51□□□□□ -0.25
CPNE3-210ENST00000621245 CHD1LQ86WJ1 897 aa13.51□□□□□ -0.25
CPNE3-210ENST00000621245 SLC17A8Q8NDX2 589 aa13.51□□□□□ -0.25
CPNE3-210ENST00000621245 DCAF4Q8WV16 495 aa13.51□□□□□ -0.25
CPNE3-210ENST00000621245 ZKSCAN3Q9BRR0 538 aa13.51□□□□□ -0.25
CPNE3-210ENST00000621245 TSEN34Q9BSV6 310 aaKnown RBP13.51□□□□□ -0.25
CPNE3-210ENST00000621245 TBX21Q9UL17 535 aa13.51□□□□□ -0.25
CPNE3-210ENST00000621245 CCPG1Q9ULG6 757 aa13.51□□□□□ -0.25
CPNE3-210ENST00000621245 STXBP5LQ9Y2K9 1186 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms