RNA–Protein interactions for RNA: ENST00000620507.4

RBFOX1-223, Transcript of RNA binding fox-1 homolog 1, human

TSL 5 BASIC

Gene RBFOX1, Length 4,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBFOX1-223	ENST00000620507	LARP4B	Q92615	738 aa	Known RBP	10.27	□□□□□ -0.77
RBFOX1-223	ENST00000620507	CNOT6L	Q96LI5	555 aa	Known RBP	10.27	□□□□□ -0.77
RBFOX1-223	ENST00000620507	CWC15	Q9P013	229 aa	Known RBP	10.27	□□□□□ -0.77
RBFOX1-223	ENST00000620507	DDX25	Q9UHL0	483 aa	Known RBP	10.27	□□□□□ -0.77
RBFOX1-223	ENST00000620507	PCDHA6	Q9UN73	950 aa		10.27	□□□□□ -0.77
RBFOX1-223	ENST00000620507	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	10.27	□□□□□ -0.77
RBFOX1-223	ENST00000620507	PCDHA8	Q9Y5H6	950 aa		10.27	□□□□□ -0.77
RBFOX1-223	ENST00000620507	SPEF2	Q9C093	1822 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	PDE6B	P35913	854 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	SLC16A2	P36021	539 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	TC2N	Q8N9U0	490 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	IPO4	Q8TEX9	1081 aa	Known RBP	10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	HAUS4	Q9H6D7	363 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	SEPT11	Q9NVA2	429 aa	Known RBP	10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	SWAP70	Q9UH65	585 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	GABPB1	Q06547	395 aa	Predicted RBP	10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	TXNRD1	Q16881	649 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	HAUS3	Q68CZ6	603 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	SLC35F6	Q8N357	371 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	COA1	Q9GZY4	146 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	NT5C3A	Q9H0P0	336 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	QTRT2	Q9H974	415 aa	Known RBP	10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	EHMT1	Q9H9B1	1298 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	ADD3	Q9UEY8	706 aa	Known RBP	10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	CDC23	Q9UJX2	597 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	hCG_1984214	I3L0E3	225 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	RASA1	P20936	1047 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	CCNE1	P24864	410 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	USH1G	Q495M9	461 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	KCTD1	Q719H9	257 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	GPIHBP1	Q8IV16	184 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	NELFCD	Q8IXH7	590 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	ZNF713	Q8N859	430 aa	Predicted RBP	10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	GJD4	Q96KN9	370 aa	Predicted RBP	10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	PCDHA1	Q9Y5I3	950 aa		10.26	□□□□□ -0.77
RBFOX1-223	ENST00000620507	MTF1	Q14872	753 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	CERKL	Q49MI3	558 aa	Predicted RBP	10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	C2CD5	Q86YS7	1000 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	RABGGTA	Q92696	567 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	CCDC17	Q96LX7	622 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	TSGA10	Q9BZW7	698 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	THAP9	Q9H5L6	903 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507		H0YIN7	160 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	NOP2	P46087	812 aa	Known RBP	10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	PPP4C	P60510	307 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	TNIP1	Q15025	636 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	MYOCD	Q8IZQ8	938 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	SPZ1	Q9BXG8	430 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	ADGRG1	Q9Y653	693 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	SARS	P49591	514 aa	Known RBP	10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	SKIDA1	Q1XH10	827 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	TYW1B	Q6NUM6	668 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	RRAGA	Q7L523	313 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	TRMT1L	Q7Z2T5	733 aa	Known RBP	10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	STK17A	Q9UEE5	414 aa		10.25	□□□□□ -0.77
RBFOX1-223	ENST00000620507	FLT1	P17948	1338 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	PDS5A	Q29RF7	1337 aa	Known RBP	10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	CLCN6	P51797	869 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	RBM26	Q5T8P6	1007 aa	Known RBP	10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	NCAPH2	Q6IBW4	605 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	HDX	Q7Z353	690 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	SRGAP1	Q7Z6B7	1085 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	MB21D1	Q8N884	522 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	TBC1D16	Q8TBP0	767 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	SECISBP2L	Q93073	1101 aa	Known RBP	10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	WDR24	Q96S15	920 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	CCSER1	Q9C0I3	900 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	DBNDD1	Q9H9R9	158 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	ABHD10	Q9NUJ1	306 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	TACC3	Q9Y6A5	838 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	CETN3	O15182	167 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	CD44	P16070	742 aa	Known RBP	10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	BMP6	P22004	513 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	MDM2	Q00987	491 aa	Predicted RBP	10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	UBE2S	Q16763	222 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	WHAMMP3	Q1A5X7	153 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	NT5DC1	Q5TFE4	455 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	SLFN13	Q68D06	897 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	MSL1	Q68DK7	614 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	STXBP4	Q6ZWJ1	553 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	IFIH1	Q9BYX4	1025 aa	Known RBP	10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	TMEM60	Q9H2L4	133 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	DDX41	Q9UJV9	622 aa	Known RBP	10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	MYO6	Q9UM54	1294 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	SAR1B	Q9Y6B6	198 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	KDM3A	Q9Y4C1	1321 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	PKD1L3	Q7Z443	1732 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	PNMA6F	A0A0J9YX94	578 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	PPP1R3G	B7ZBB8	358 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	NDUFA10	O95299	355 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	APBA3	O96018	575 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	MAGEA1	P43355	309 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	LMAN1	P49257	510 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	RETREG2	Q8NC44	543 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	IQCD	Q96DY2	449 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	VEZT	Q9HBM0	779 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	NLRC4	Q9NPP4	1024 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	TMEM260	Q9NX78	707 aa		10.24	□□□□□ -0.77
RBFOX1-223	ENST00000620507	MYO1A	Q9UBC5	1043 aa		10.24	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms