RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 TIMM10P62072 90 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 TCIRG1Q13488 830 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 MEA1Q16626 185 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 LMBR1LQ6UX01 489 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 CCDC121Q6ZUS5 278 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 ARL8AQ96BM9 186 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 FAM212AQ96EL1 285 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 RRP36Q96EU6 259 aaKnown RBP12.05□□□□□ -0.48
UPF3A-212ENST00000619079 PURBQ96QR8 312 aaKnown RBP12.05□□□□□ -0.48
UPF3A-212ENST00000619079 TRIM6Q9C030 488 aaPredicted RBP12.05□□□□□ -0.48
UPF3A-212ENST00000619079 TAB2Q9NYJ8 693 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 CAPN11Q9UMQ6 739 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 TTC26A0AVF1 554 aa12.04□□□□□ -0.48
UPF3A-212ENST00000619079 CDC25AP30304 524 aa12.04□□□□□ -0.48
UPF3A-212ENST00000619079 KIF5AQ12840 1032 aa12.04□□□□□ -0.48
UPF3A-212ENST00000619079 NLRP14Q86W24 1093 aa12.04□□□□□ -0.48
UPF3A-212ENST00000619079 CD302Q8IX05 232 aa12.04□□□□□ -0.48
UPF3A-212ENST00000619079 PARP9Q8IXQ6 854 aa12.04□□□□□ -0.48
UPF3A-212ENST00000619079 ARFGAP2Q8N6H7 521 aa12.04□□□□□ -0.48
UPF3A-212ENST00000619079 FERMT2Q96AC1 680 aa12.04□□□□□ -0.48
UPF3A-212ENST00000619079 FAXDC2Q96IV6 333 aa12.04□□□□□ -0.48
UPF3A-212ENST00000619079 CCDC114Q96M63 670 aa12.04□□□□□ -0.48
UPF3A-212ENST00000619079 ATP6V0A4Q9HBG4 840 aa12.04□□□□□ -0.48
UPF3A-212ENST00000619079 PPP1R1BQ9UD71 204 aaPredicted RBP12.04□□□□□ -0.48
UPF3A-212ENST00000619079 NID2Q14112 1375 aa12.04□□□□□ -0.48
UPF3A-212ENST00000619079 CIAO1O76071 339 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 TCP1P17987 556 aaKnown RBP12.03□□□□□ -0.48
UPF3A-212ENST00000619079 NR1D1P20393 614 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 LIFRP42702 1097 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 FKBP4Q02790 459 aaKnown RBP eCLIP12.03□□□□□ -0.48
UPF3A-212ENST00000619079 CFAP58Q5T655 872 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 NBPF5PQ86XG9 351 aaPredicted RBP12.03□□□□□ -0.48
UPF3A-212ENST00000619079 RETREG2Q8NC44 543 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 MYCBPAPQ8TBZ2 947 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 P3H4Q92791 437 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 SGSM3Q96HU1 749 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 CCT8L2Q96SF2 557 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 RMND1Q9NWS8 449 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 PCDHB6Q9Y5E3 794 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 SLC12A7Q9Y666 1083 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 QSER1Q2KHR3 1735 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 LGALS16A8MUM7 142 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 HMGB1P1B2RPK0 211 aaPredicted RBP12.03□□□□□ -0.48
UPF3A-212ENST00000619079 GPAA1O43292 621 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 TACC1O75410 805 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 RXRAP19793 462 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 ZKSCAN8Q15776 578 aaPredicted RBP12.03□□□□□ -0.48
UPF3A-212ENST00000619079 CREG2Q8IUH2 290 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 SPATA4Q8NEY3 305 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 RNPC3Q96LT9 517 aaKnown RBP12.03□□□□□ -0.48
UPF3A-212ENST00000619079 ZIM3Q96PE6 472 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 LRRC1Q9BTT6 524 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 NUP58Q9BVL2 599 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 CENPHQ9H3R5 247 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 TAOK2Q9UL54 1235 aa12.03□□□□□ -0.48
UPF3A-212ENST00000619079 TRIM75PA6NK02 468 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 H7C1D1 291 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 EYA2O00167 538 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 RGL2O15211 777 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 ZNF185O15231 689 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 NEBLO76041 1014 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 MDH1P40925 334 aaKnown RBP12.02□□□□□ -0.48
UPF3A-212ENST00000619079 ATP1A2P50993 1020 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 SLC8A3P57103 927 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 IFT88Q13099 833 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 NBPF9Q3BBW0 867 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 CCDC181Q5TID7 509 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 RRAGBQ5VZM2 374 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 PPP4R3AQ6IN85 833 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 CYB5D1Q6P9G0 228 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 C6orf89Q6UWU4 347 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 ARMC9Q7Z3E5 817 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 IFT20Q8IY31 132 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 MREGQ8N565 214 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 CCDC155Q8N6L0 562 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 MB21D1Q8N884 522 aa12.02□□□□□ -0.48
UPF3A-212ENST00000619079 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.02□□□□□ -0.48
UPF3A-212ENST00000619079 DMGDHQ9UI17 866 aaKnown RBP12.02□□□□□ -0.48
UPF3A-212ENST00000619079 USO1O60763 962 aaKnown RBP12.02□□□□□ -0.49
UPF3A-212ENST00000619079 DEXIO95424 95 aa12.02□□□□□ -0.49
UPF3A-212ENST00000619079 SERPINB2P05120 415 aa12.02□□□□□ -0.49
UPF3A-212ENST00000619079 EEF1GP26641 437 aaKnown RBP12.02□□□□□ -0.49
UPF3A-212ENST00000619079 PAFAH1B1P43034 410 aa12.02□□□□□ -0.49
UPF3A-212ENST00000619079 CLNS1AP54105 237 aaKnown RBP12.02□□□□□ -0.49
UPF3A-212ENST00000619079 CASP7P55210 303 aa12.02□□□□□ -0.49
UPF3A-212ENST00000619079 PARP10Q53GL7 1025 aa12.02□□□□□ -0.49
UPF3A-212ENST00000619079 TMEM67Q5HYA8 995 aa12.02□□□□□ -0.49
UPF3A-212ENST00000619079 C8orf74Q6P047 294 aa12.02□□□□□ -0.49
UPF3A-212ENST00000619079 CYB5R4Q7L1T6 521 aa12.02□□□□□ -0.49
UPF3A-212ENST00000619079 CEP57Q86XR8 500 aa12.02□□□□□ -0.49
UPF3A-212ENST00000619079 EGFL6Q8IUX8 553 aa12.02□□□□□ -0.49
UPF3A-212ENST00000619079 SMYD4Q8IYR2 804 aaPredicted RBP12.02□□□□□ -0.49
UPF3A-212ENST00000619079 TSEN2Q8NCE0 465 aaKnown RBP12.02□□□□□ -0.49
UPF3A-212ENST00000619079 LY9Q9HBG7 655 aa12.02□□□□□ -0.49
UPF3A-212ENST00000619079 FAM217BQ9NTX9 383 aaPredicted RBP12.02□□□□□ -0.49
UPF3A-212ENST00000619079 AFDNP55196 1824 aaKnown RBP12.02□□□□□ -0.49
UPF3A-212ENST00000619079 SCN7AQ01118 1682 aa12.02□□□□□ -0.49
UPF3A-212ENST00000619079 GOLGB1Q14789 3259 aaKnown RBP12.02□□□□□ -0.49
UPF3A-212ENST00000619079 POLRMTO00411 1230 aaKnown RBP12.01□□□□□ -0.49
UPF3A-212ENST00000619079 TM4SF1P30408 202 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms