RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 PHF20Q9BVI0 1012 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 SMCO2A6NFE2 343 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 CEP104O60308 925 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 FTCDO95954 541 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 TCP1P17987 556 aaKnown RBP13.98□□□□□ -0.17
LIG1-221ENST00000613670 EHHADHQ08426 723 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 SLC9C1Q4G0N8 1177 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 MSANTD4Q8NCY6 345 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 SNX29Q8TEQ0 813 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 DYNLL2Q96FJ2 89 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 EPB41L5Q9HCM4 733 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 E7EVH7 732 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 USP17L8P0C7I0 530 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 CEP85LQ5SZL2 805 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 NBPF5PQ86XG9 351 aaPredicted RBP13.98□□□□□ -0.17
LIG1-221ENST00000613670 FAM184BQ9ULE4 1060 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 TRAPPC10P48553 1259 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 CCDC84Q86UT8 332 aaPredicted RBP13.97□□□□□ -0.17
LIG1-221ENST00000613670 NLRP3Q96P20 1036 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 KRT12Q99456 494 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 LRRC1Q9BTT6 524 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 LACRTQ9GZZ8 138 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 PSD3Q9NYI0 1048 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 OR52Z1P0C646 297 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 KIF11P52732 1056 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 CDKAL1Q5VV42 579 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 B4GALNT4Q76KP1 1039 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 TGFBRAP1Q8WUH2 860 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 RNF225M0QZC1 329 aaPredicted RBP13.97□□□□□ -0.17
LIG1-221ENST00000613670 PAK2Q13177 524 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 ICE2Q659A1 982 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 LRRC31Q6UY01 552 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 CCDC121Q6ZUS5 278 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 TRMT1LQ7Z2T5 733 aaKnown RBP13.97□□□□□ -0.17
LIG1-221ENST00000613670 VPS36Q86VN1 386 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 EFCAB13Q8IY85 973 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 EHD2Q9NZN4 543 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 PCDHA13Q9Y5I0 950 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 FAM169AQ9Y6X4 670 aa13.97□□□□□ -0.17
LIG1-221ENST00000613670 A0A087WUV0 522 aaPredicted RBP13.96□□□□□ -0.17
LIG1-221ENST00000613670 USP17L3A6NCW0 530 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 USP17L4A6NCW7 530 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 KLRF2D3W0D1 207 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 HEXIM1O94992 359 aaKnown RBP13.96□□□□□ -0.17
LIG1-221ENST00000613670 FCER1AP12319 257 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 CCNE1P24864 410 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 TNNC1P63316 161 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 PICALMQ13492 652 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 USP17L1Q7RTZ2 530 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 GPCPD1Q9NPB8 672 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 CCDC87Q9NVE4 849 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 HPCAL4Q9UM19 191 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 NFU1Q9UMS0 254 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 PCDHA4Q9UN74 947 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 MAP2K7O14733 419 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 LDHBP07195 334 aaKnown RBP13.96□□□□□ -0.17
LIG1-221ENST00000613670 POLR2FP61218 127 aaKnown RBP13.96□□□□□ -0.17
LIG1-221ENST00000613670 KLHL30Q0D2K2 578 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 DCAF17Q5H9S7 520 aaPredicted RBP13.96□□□□□ -0.17
LIG1-221ENST00000613670 TADA2BQ86TJ2 420 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 SH2D3CQ8N5H7 860 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 SCLT1Q96NL6 688 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 CARD10Q9BWT7 1032 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 F8W031 263 aaPredicted RBP13.96□□□□□ -0.17
LIG1-221ENST00000613670 KCNQ4P56696 695 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 PARP10Q53GL7 1025 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 CPLX4Q7Z7G2 160 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 DHTKD1Q96HY7 919 aaPredicted RBP13.96□□□□□ -0.17
LIG1-221ENST00000613670 MED15Q96RN5 788 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 EFCC1Q9HA90 598 aa13.96□□□□□ -0.17
LIG1-221ENST00000613670 FAM237AA0A1B0GTK4 181 aa13.96□□□□□ -0.18
LIG1-221ENST00000613670 GOLGA8KD6RF30 607 aa13.96□□□□□ -0.18
LIG1-221ENST00000613670 WNT7AO00755 349 aa13.96□□□□□ -0.18
LIG1-221ENST00000613670 KIAA0753Q2KHM9 967 aa13.96□□□□□ -0.18
LIG1-221ENST00000613670 THAP9Q9H5L6 903 aa13.96□□□□□ -0.18
LIG1-221ENST00000613670 KCNK3O14649 394 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 NNTQ13423 1086 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 CALCRLQ16602 461 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 HERC4Q5GLZ8 1057 aaPredicted RBP13.95□□□□□ -0.18
LIG1-221ENST00000613670 NT5DC1Q5TFE4 455 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 SFMBT2Q5VUG0 894 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 LSM14BQ9BX40 385 aaKnown RBP13.95□□□□□ -0.18
LIG1-221ENST00000613670 KANSL2Q9H9L4 492 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 NWD1Q149M9 1564 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 PLEKP08567 350 aaPredicted RBP13.95□□□□□ -0.18
LIG1-221ENST00000613670 EZH2Q15910 746 aaKnown RBP13.95□□□□□ -0.18
LIG1-221ENST00000613670 TMC4Q7Z404 712 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 POTEDQ86YR6 584 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 CCDC170Q8IYT3 715 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 STAG2Q8N3U4 1231 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 DYDC1Q8WWB3 177 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 RAB21Q9UL25 225 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 CAPN11Q9UMQ6 739 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.95□□□□□ -0.18
LIG1-221ENST00000613670 ITIH6Q6UXX5 1313 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 CACNB1Q02641 598 aaPredicted RBP13.95□□□□□ -0.18
LIG1-221ENST00000613670 ANKRD40Q6AI12 368 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 ADSSL1Q8N142 457 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 PLA2G12BQ9BX93 195 aa13.95□□□□□ -0.18
LIG1-221ENST00000613670 PRDX5P30044 214 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms