RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 LGSNQ5TDP6 509 aa5.4□□□□□ -1.54
VPS13D-213ENST00000613099 CARD9Q9H257 536 aa5.4□□□□□ -1.54
VPS13D-213ENST00000613099 DBNLQ9UJU6 430 aaKnown RBP5.4□□□□□ -1.54
VPS13D-213ENST00000613099 IGF1RP08069 1367 aa5.4□□□□□ -1.54
VPS13D-213ENST00000613099 HDAC4P56524 1084 aa5.4□□□□□ -1.54
VPS13D-213ENST00000613099 CDR2Q01850 454 aa5.4□□□□□ -1.54
VPS13D-213ENST00000613099 SSRP1Q08945 709 aaKnown RBP5.4□□□□□ -1.54
VPS13D-213ENST00000613099 KCNV2Q8TDN2 545 aa5.4□□□□□ -1.54
VPS13D-213ENST00000613099 LRRC37BQ96QE4 947 aa5.4□□□□□ -1.54
VPS13D-213ENST00000613099 KIFC3Q9BVG8 833 aa5.4□□□□□ -1.54
VPS13D-213ENST00000613099 SMAPO00193 183 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 PPARDQ03181 441 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 MYBPC2Q14324 1141 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 BZW1Q7L1Q6 419 aaKnown RBP5.4□□□□□ -1.55
VPS13D-213ENST00000613099 TRIML2Q8N7C3 387 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 NAP1L4Q99733 375 aaKnown RBP5.4□□□□□ -1.55
VPS13D-213ENST00000613099 KCNH3Q9ULD8 1083 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 COMMD3-BMI1R4GMX3 469 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 KDM5DQ9BY66 1539 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 SMARCA5O60264 1052 aaPredicted RBP5.4□□□□□ -1.55
VPS13D-213ENST00000613099 POTEIP0CG38 1075 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 EIF2B2P49770 351 aaKnown RBP5.4□□□□□ -1.55
VPS13D-213ENST00000613099 ADARP55265 1226 aaKnown RBP5.4□□□□□ -1.55
VPS13D-213ENST00000613099 NAF1Q96HR8 494 aaKnown RBP5.4□□□□□ -1.55
VPS13D-213ENST00000613099 SLF1Q9BQI6 1058 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 DNAJC17Q9NVM6 304 aaKnown RBP5.4□□□□□ -1.55
VPS13D-213ENST00000613099 FER1L4A9Z1Z3 1794 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 MDH1P40925 334 aaKnown RBP5.4□□□□□ -1.55
VPS13D-213ENST00000613099 PLCB3Q01970 1234 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 NAA30Q147X3 362 aaPredicted RBP5.4□□□□□ -1.55
VPS13D-213ENST00000613099 ST13P5Q8NFI4 369 aaPredicted RBP5.4□□□□□ -1.55
VPS13D-213ENST00000613099 SNRNP27Q8WVK2 155 aaKnown RBP5.4□□□□□ -1.55
VPS13D-213ENST00000613099 AP1B1Q10567 949 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 TRIM16LQ309B1 348 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 OLFML2BQ68BL8 750 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 SPINK5Q9NQ38 1064 aaPredicted RBP5.4□□□□□ -1.55
VPS13D-213ENST00000613099 KRT9P35527 623 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 GET4Q7L5D6 327 aaPredicted RBP5.4□□□□□ -1.55
VPS13D-213ENST00000613099 CCT7Q99832 543 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.4□□□□□ -1.553e-7■■■■□ 24.5
VPS13D-213ENST00000613099 CCPG1Q9ULG6 757 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 SLC4A2P04920 1241 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 GOLGA8FQ08AF8 430 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 GOLGA8DPQ0D2H9 430 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 ESCO1Q5FWF5 840 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 TRIM47Q96LD4 638 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 NACA2Q9H009 215 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 HPCAL4Q9UM19 191 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 EPN1Q9Y6I3 576 aaPredicted RBP5.4□□□□□ -1.55
VPS13D-213ENST00000613099 ATP10AO60312 1499 aa5.4□□□□□ -1.55
VPS13D-213ENST00000613099 ERVK-7P63135 1459 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 RETREG2Q8NC44 543 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 TSNARE1Q96NA8 513 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 ARL2BPQ9Y2Y0 163 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 TTC21BQ7Z4L5 1316 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 SERPINB1P30740 379 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 ICA1LQ8NDH6 482 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 DDX54Q8TDD1 881 aaKnown RBP5.39□□□□□ -1.55
VPS13D-213ENST00000613099 KRT80Q6KB66 452 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 ARHGEF25Q86VW2 580 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 SIX5Q8N196 739 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 RFWD2Q8NHY2 731 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 BRF1Q92994 677 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 EFHD1Q9BUP0 239 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 SEL1LQ9UBV2 794 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 POLR3DP05423 398 aaPredicted RBP5.39□□□□□ -1.55
VPS13D-213ENST00000613099 CCDC166P0CW27 439 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 MCF2P10911 925 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 SYCP2LQ5T4T6 812 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 LRIG3Q6UXM1 1119 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 ARHGEF18Q6ZSZ5 1173 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 NECAB1Q8N987 351 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 KRIT1O00522 736 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 TTC39AQ5SRH9 613 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 SPATA1Q5VX52 437 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 ANKRD35Q8N283 1001 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 CYFIP2Q96F07 1278 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 BPIFA3Q9BQP9 254 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 C2CD2Q9Y426 696 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 AP4S1Q9Y587 144 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 GUCY1B2O75343 617 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 KIF23Q02241 960 aaPredicted RBP5.39□□□□□ -1.55
VPS13D-213ENST00000613099 ITIH4Q14624 930 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 ZBTB41Q5SVQ8 909 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 FANCLQ9NW38 375 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 RWDD3Q9Y3V2 267 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 KDRP35968 1356 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 MYH7P12883 1935 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 A0A087WZG4 1122 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 KIF6Q6ZMV9 814 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 QKIQ96PU8 341 aaKnown RBP eCLIP5.39□□□□□ -1.552e-6■■■■■ 33.9
VPS13D-213ENST00000613099 FUT8Q9BYC5 575 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 OLFML3Q9NRN5 406 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 ADGRL1O94910 1474 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 SERPINB4P48594 390 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 STRN3Q13033 797 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 LZTS2Q9BRK4 669 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 FHDC1Q9C0D6 1143 aaPredicted RBP5.39□□□□□ -1.55
VPS13D-213ENST00000613099 MRGBPQ9NV56 204 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 VSTM4Q8IW00 320 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms