RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SV2BQ7L1I2 683 aa6.66□□□□□ -1.34
LINC00540-201ENST00000611481 CDH24Q86UP0 819 aa6.66□□□□□ -1.34
LINC00540-201ENST00000611481 ABHD8Q96I13 439 aa6.66□□□□□ -1.34
LINC00540-201ENST00000611481 ADAMTS10Q9H324 1103 aa6.66□□□□□ -1.34
LINC00540-201ENST00000611481 FAM8A1Q9UBU6 413 aa6.66□□□□□ -1.34
LINC00540-201ENST00000611481 SPG7Q9UQ90 795 aa6.66□□□□□ -1.34
LINC00540-201ENST00000611481 HFM1A2PYH4 1435 aa6.66□□□□□ -1.34
LINC00540-201ENST00000611481 KIF1AQ12756 1690 aa6.65□□□□□ -1.34
LINC00540-201ENST00000611481 CREG2Q8IUH2 290 aa6.65□□□□□ -1.34
LINC00540-201ENST00000611481 C16orf71Q8IYS4 520 aaPredicted RBP6.65□□□□□ -1.34
LINC00540-201ENST00000611481 PMFBP1Q8TBY8 1022 aa6.65□□□□□ -1.34
LINC00540-201ENST00000611481 C12orf49Q9H741 205 aa6.65□□□□□ -1.34
LINC00540-201ENST00000611481 NMRK2Q9NPI5 230 aa6.65□□□□□ -1.34
LINC00540-201ENST00000611481 TACC3Q9Y6A5 838 aa6.65□□□□□ -1.34
LINC00540-201ENST00000611481 SBNO1A3KN83 1393 aa6.65□□□□□ -1.35
LINC00540-201ENST00000611481 DHX57Q6P158 1386 aaKnown RBP6.65□□□□□ -1.35
LINC00540-201ENST00000611481 OVOS2A0A0G2JMS6 1433 aa6.65□□□□□ -1.35
LINC00540-201ENST00000611481 OVOS2A0A0J9YW53 1432 aa6.65□□□□□ -1.35
LINC00540-201ENST00000611481 NAIPQ13075 1403 aa6.65□□□□□ -1.35
LINC00540-201ENST00000611481 OVOS2Q6IE36 1432 aa6.65□□□□□ -1.35
LINC00540-201ENST00000611481 CCDC85CA6NKD9 419 aa6.64□□□□□ -1.35
LINC00540-201ENST00000611481 ETV3P41162 512 aa6.64□□□□□ -1.35
LINC00540-201ENST00000611481 CDK8P49336 464 aa6.64□□□□□ -1.35
LINC00540-201ENST00000611481 FMR1Q06787 632 aaKnown RBP eCLIP6.64□□□□□ -1.35
LINC00540-201ENST00000611481 FSTL1Q12841 308 aa6.64□□□□□ -1.35
LINC00540-201ENST00000611481 CHRNA2Q15822 529 aa6.64□□□□□ -1.35
LINC00540-201ENST00000611481 RETREG2Q8NC44 543 aa6.64□□□□□ -1.35
LINC00540-201ENST00000611481 SETDB2Q96T68 719 aa6.64□□□□□ -1.35
LINC00540-201ENST00000611481 TRIT1Q9H3H1 467 aaKnown RBP6.64□□□□□ -1.35
LINC00540-201ENST00000611481 GNEQ9Y223 722 aaKnown RBP6.64□□□□□ -1.35
LINC00540-201ENST00000611481 ARHGEF28Q8N1W1 1705 aaKnown RBP6.64□□□□□ -1.35
LINC00540-201ENST00000611481 USP17L7P0C7H9 530 aa6.63□□□□□ -1.35
LINC00540-201ENST00000611481 LMNB1P20700 586 aa6.63□□□□□ -1.35
LINC00540-201ENST00000611481 RGS19P49795 217 aa6.63□□□□□ -1.35
LINC00540-201ENST00000611481 EVA1CP58658 441 aa6.63□□□□□ -1.35
LINC00540-201ENST00000611481 ATP2B2Q01814 1243 aa6.63□□□□□ -1.35
LINC00540-201ENST00000611481 TTBK2Q6IQ55 1244 aa6.63□□□□□ -1.35
LINC00540-201ENST00000611481 IQGAP3Q86VI3 1631 aa6.63□□□□□ -1.35
LINC00540-201ENST00000611481 SBF2Q86WG5 1849 aa6.63□□□□□ -1.35
LINC00540-201ENST00000611481 ZSCAN29Q8IWY8 852 aaPredicted RBP6.63□□□□□ -1.35
LINC00540-201ENST00000611481 MRPL41Q8IXM3 137 aaKnown RBP6.63□□□□□ -1.35
LINC00540-201ENST00000611481 TCP11L2Q8N4U5 519 aa6.63□□□□□ -1.35
LINC00540-201ENST00000611481 TOPAZ1Q8N9V7 1692 aa6.63□□□□□ -1.35
LINC00540-201ENST00000611481 KRTAP9-3Q9BYQ3 159 aa6.63□□□□□ -1.35
LINC00540-201ENST00000611481 RNF32Q9H0A6 362 aa6.63□□□□□ -1.35
LINC00540-201ENST00000611481 IRF2BPLQ9H1B7 796 aa6.63□□□□□ -1.35
LINC00540-201ENST00000611481 TULP4Q9NRJ4 1543 aa6.63□□□□□ -1.35
LINC00540-201ENST00000611481 TTF2Q9UNY4 1162 aaKnown RBP6.63□□□□□ -1.35
LINC00540-201ENST00000611481 PDE4DIPQ5VU43 2346 aa6.62□□□□□ -1.35
LINC00540-201ENST00000611481 MYOM3Q5VTT5 1437 aa6.62□□□□□ -1.35
LINC00540-201ENST00000611481 GFRA2O00451 464 aa6.62□□□□□ -1.35
LINC00540-201ENST00000611481 FOXN1O15353 648 aa6.62□□□□□ -1.35
LINC00540-201ENST00000611481 HOXA5P20719 270 aa6.62□□□□□ -1.35
LINC00540-201ENST00000611481 TPP2P29144 1249 aaPredicted RBP6.62□□□□□ -1.35
LINC00540-201ENST00000611481 TRHRP34981 398 aaPredicted RBP6.62□□□□□ -1.35
LINC00540-201ENST00000611481 ZNF827Q17R98 1081 aa6.62□□□□□ -1.35
LINC00540-201ENST00000611481 GAB4Q2WGN9 574 aa6.62□□□□□ -1.35
LINC00540-201ENST00000611481 LILRA2Q8N149 483 aa6.62□□□□□ -1.35
LINC00540-201ENST00000611481 PDZD8Q8NEN9 1154 aa6.62□□□□□ -1.35
LINC00540-201ENST00000611481 DUSP15Q9H1R2 295 aaPredicted RBP6.62□□□□□ -1.35
LINC00540-201ENST00000611481 PEAK1Q9H792 1746 aa6.62□□□□□ -1.35
LINC00540-201ENST00000611481 SSH2Q76I76 1423 aa6.61□□□□□ -1.35
LINC00540-201ENST00000611481 PRAG1Q86YV5 1406 aa6.61□□□□□ -1.35
LINC00540-201ENST00000611481 KIAA0232Q92628 1395 aa6.61□□□□□ -1.35
LINC00540-201ENST00000611481 WASH4PA8MWX3 477 aa6.61□□□□□ -1.35
LINC00540-201ENST00000611481 RPS26P62854 115 aaKnown RBP6.61□□□□□ -1.35
LINC00540-201ENST00000611481 SLC6A19Q695T7 634 aa6.61□□□□□ -1.35
LINC00540-201ENST00000611481 IRF2BP1Q8IU81 584 aa6.61□□□□□ -1.35
LINC00540-201ENST00000611481 OXR1Q8N573 874 aa6.61□□□□□ -1.35
LINC00540-201ENST00000611481 TMEM87BQ96K49 555 aa6.61□□□□□ -1.35
LINC00540-201ENST00000611481 DPH2Q9BQC3 489 aaPredicted RBP6.61□□□□□ -1.35
LINC00540-201ENST00000611481 SLC6A17Q9H1V8 727 aa6.61□□□□□ -1.35
LINC00540-201ENST00000611481 GPATCH2Q9NW75 528 aa6.61□□□□□ -1.35
LINC00540-201ENST00000611481 TJP2Q9UDY2 1190 aa6.61□□□□□ -1.35
LINC00540-201ENST00000611481 RBAK-RBAKDNI3L0D1 243 aa6.6□□□□□ -1.35
LINC00540-201ENST00000611481 PGRP06401 933 aa6.6□□□□□ -1.35
LINC00540-201ENST00000611481 WAPLQ7Z5K2 1190 aa6.6□□□□□ -1.35
LINC00540-201ENST00000611481 BAHD1Q8TBE0 780 aaPredicted RBP6.6□□□□□ -1.35
LINC00540-201ENST00000611481 C20orf173Q96LM9 149 aa6.6□□□□□ -1.35
LINC00540-201ENST00000611481 Q96M66 194 aa6.6□□□□□ -1.35
LINC00540-201ENST00000611481 KRTAP17-1Q9BYP8 105 aa6.6□□□□□ -1.35
LINC00540-201ENST00000611481 SP110Q9HB58 689 aa6.6□□□□□ -1.35
LINC00540-201ENST00000611481 PARD6AQ9NPB6 346 aa6.6□□□□□ -1.35
LINC00540-201ENST00000611481 DUSP13Q9UII6 198 aa6.6□□□□□ -1.35
LINC00540-201ENST00000611481 ATP7BP35670 1465 aa6.6□□□□□ -1.35
LINC00540-201ENST00000611481 FMN2Q9NZ56 1722 aa6.59□□□□□ -1.35
LINC00540-201ENST00000611481 PARP4Q9UKK3 1724 aaKnown RBP6.59□□□□□ -1.35
LINC00540-201ENST00000611481 FITM1A5D6W6 292 aa6.59□□□□□ -1.35
LINC00540-201ENST00000611481 PEX10O60683 326 aa6.59□□□□□ -1.35
LINC00540-201ENST00000611481 SEMA7AO75326 666 aa6.59□□□□□ -1.35
LINC00540-201ENST00000611481 ZGLP1P0C6A0 271 aa6.59□□□□□ -1.35
LINC00540-201ENST00000611481 DLG4P78352 724 aa6.59□□□□□ -1.35
LINC00540-201ENST00000611481 EGR3Q06889 387 aa6.59□□□□□ -1.35
LINC00540-201ENST00000611481 PDE4BQ07343 736 aa6.59□□□□□ -1.35
LINC00540-201ENST00000611481 DNAJB8Q8NHS0 232 aa6.59□□□□□ -1.35
LINC00540-201ENST00000611481 DHX38Q92620 1227 aaKnown RBP6.59□□□□□ -1.35
LINC00540-201ENST00000611481 RELTQ969Z4 430 aa6.59□□□□□ -1.35
LINC00540-201ENST00000611481 FRMD6Q96NE9 622 aa6.59□□□□□ -1.35
LINC00540-201ENST00000611481 MCOLN1Q9GZU1 580 aa6.59□□□□□ -1.35
LINC00540-201ENST00000611481 CWC22Q9HCG8 908 aaKnown RBP6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms