RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 CCPG1Q9ULG6 757 aa13.5□□□□□ -0.25
LINC00539-204ENST00000608957 NR2E3Q9Y5X4 410 aa13.5□□□□□ -0.25
LINC00539-204ENST00000608957 SYN1P17600 705 aa13.49□□□□□ -0.25
LINC00539-204ENST00000608957 HSPA4P34932 840 aa13.49□□□□□ -0.25
LINC00539-204ENST00000608957 COL9A3Q14050 684 aaPredicted RBP13.49□□□□□ -0.25
LINC00539-204ENST00000608957 ARMCX2Q7L311 632 aa13.49□□□□□ -0.25
LINC00539-204ENST00000608957 IQCA1Q86XH1 822 aa13.49□□□□□ -0.25
LINC00539-204ENST00000608957 KRT23Q9C075 422 aa13.49□□□□□ -0.25
LINC00539-204ENST00000608957 UBA5Q9GZZ9 404 aa13.49□□□□□ -0.25
LINC00539-204ENST00000608957 CYP39A1Q9NYL5 469 aa13.49□□□□□ -0.25
LINC00539-204ENST00000608957 RBM8AQ9Y5S9 174 aaKnown RBP13.49□□□□□ -0.25
LINC00539-204ENST00000608957 KIAA1217Q5T5P2 1943 aa13.49□□□□□ -0.25
LINC00539-204ENST00000608957 POTEB2H3BUK9 544 aa13.48□□□□□ -0.25
LINC00539-204ENST00000608957 NFIBO00712 420 aa13.48□□□□□ -0.25
LINC00539-204ENST00000608957 ADAMTS4O75173 837 aa13.48□□□□□ -0.25
LINC00539-204ENST00000608957 PGK1P00558 417 aa13.48□□□□□ -0.25
LINC00539-204ENST00000608957 NT5C2P49902 561 aa13.48□□□□□ -0.25
LINC00539-204ENST00000608957 ATN1P54259 1190 aaPredicted RBP13.48□□□□□ -0.25
LINC00539-204ENST00000608957 ACVR2BQ13705 512 aa13.48□□□□□ -0.25
LINC00539-204ENST00000608957 RABEP1Q15276 862 aa13.48□□□□□ -0.25
LINC00539-204ENST00000608957 CCDC144CPQ8IYA2 1237 aa13.48□□□□□ -0.25
LINC00539-204ENST00000608957 CLEC4DQ8WXI8 215 aa13.48□□□□□ -0.25
LINC00539-204ENST00000608957 MAP4K1Q92918 833 aa13.48□□□□□ -0.25
LINC00539-204ENST00000608957 IL17RAQ96F46 866 aa13.48□□□□□ -0.25
LINC00539-204ENST00000608957 IPO9Q96P70 1041 aaKnown RBP13.48□□□□□ -0.25
LINC00539-204ENST00000608957 CNNM2Q9H8M5 875 aa13.48□□□□□ -0.25
LINC00539-204ENST00000608957 SENP2Q9HC62 589 aa13.48□□□□□ -0.25
LINC00539-204ENST00000608957 XPNPEP3Q9NQH7 507 aa13.48□□□□□ -0.25
LINC00539-204ENST00000608957 ZHX1Q9UKY1 873 aaPredicted RBP13.48□□□□□ -0.25
LINC00539-204ENST00000608957 U3KPZ7 1027 aaPredicted RBP13.48□□□□□ -0.25
LINC00539-204ENST00000608957 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.47□□□□□ -0.25
LINC00539-204ENST00000608957 MYADML2A6NDP7 307 aa13.47□□□□□ -0.25
LINC00539-204ENST00000608957 E7EWF7 191 aa13.47□□□□□ -0.25
LINC00539-204ENST00000608957 RARBP10826 455 aa13.47□□□□□ -0.25
LINC00539-204ENST00000608957 AKR1A1P14550 325 aa13.47□□□□□ -0.25
LINC00539-204ENST00000608957 PTGS1P23219 599 aa13.47□□□□□ -0.25
LINC00539-204ENST00000608957 FXR1P51114 621 aaKnown RBP eCLIP13.47□□□□□ -0.25
LINC00539-204ENST00000608957 ANTXR2P58335 489 aa13.47□□□□□ -0.25
LINC00539-204ENST00000608957 CCDC178Q5BJE1 867 aa13.47□□□□□ -0.25
LINC00539-204ENST00000608957 STAG2Q8N3U4 1231 aa13.47□□□□□ -0.25
LINC00539-204ENST00000608957 ARRDC4Q8NCT1 418 aa13.47□□□□□ -0.25
LINC00539-204ENST00000608957 GDF15Q99988 308 aa13.47□□□□□ -0.25
LINC00539-204ENST00000608957 KAT14Q9H8E8 782 aa13.47□□□□□ -0.25
LINC00539-204ENST00000608957 CNPY2Q9Y2B0 182 aa13.47□□□□□ -0.25
LINC00539-204ENST00000608957 SYNRGQ9UMZ2 1314 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 KBTBD13C9JR72 458 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 MYCNP04198 464 aaPredicted RBP13.46□□□□□ -0.25
LINC00539-204ENST00000608957 ADCYAP1R1P41586 468 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 RTP1P59025 263 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 BAATQ14032 418 aaPredicted RBP13.46□□□□□ -0.25
LINC00539-204ENST00000608957 SNX17Q15036 470 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 NECTIN1Q15223 517 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 SLC35G1Q2M3R5 365 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 GPATCH4Q5T3I0 446 aaKnown RBP13.46□□□□□ -0.25
LINC00539-204ENST00000608957 RNF20Q5VTR2 975 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 NSMFQ6X4W1 530 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 SLC30A10Q6XR72 485 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 SLC39A5Q6ZMH5 540 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 CHST3Q7LGC8 479 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 KLHDC9Q8NEP7 349 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 FERMT2Q96AC1 680 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 ABHD16BQ9H3Z7 469 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 FAM184BQ9ULE4 1060 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 PHF24Q9UPV7 400 aa13.46□□□□□ -0.25
LINC00539-204ENST00000608957 RANBP2P49792 3224 aaKnown RBP13.46□□□□□ -0.26
LINC00539-204ENST00000608957 WDR19Q8NEZ3 1342 aa13.45□□□□□ -0.26
LINC00539-204ENST00000608957 CTAGE5O15320 804 aa13.45□□□□□ -0.26
LINC00539-204ENST00000608957 MAGEA10P43363 369 aaPredicted RBP13.45□□□□□ -0.26
LINC00539-204ENST00000608957 BECN1Q14457 450 aa13.45□□□□□ -0.26
LINC00539-204ENST00000608957 CDC37Q16543 378 aaPredicted RBP13.45□□□□□ -0.26
LINC00539-204ENST00000608957 CCDC144BQ3MJ40 725 aa13.45□□□□□ -0.26
LINC00539-204ENST00000608957 ASPRV1Q53RT3 343 aa13.45□□□□□ -0.26
LINC00539-204ENST00000608957 TMEM63BQ5T3F8 832 aa13.45□□□□□ -0.26
LINC00539-204ENST00000608957 IFIT1BQ5T764 474 aaKnown RBP13.45□□□□□ -0.26
LINC00539-204ENST00000608957 CREB3L3Q68CJ9 461 aa13.45□□□□□ -0.26
LINC00539-204ENST00000608957 CCSAPQ6IQ19 270 aaPredicted RBP13.45□□□□□ -0.26
LINC00539-204ENST00000608957 MB21D2Q8IYB1 491 aaPredicted RBP13.45□□□□□ -0.26
LINC00539-204ENST00000608957 ADGRF4Q8IZF3 695 aa13.45□□□□□ -0.26
LINC00539-204ENST00000608957 MORC4Q8TE76 937 aa13.45□□□□□ -0.26
LINC00539-204ENST00000608957 KCNB2Q92953 911 aa13.45□□□□□ -0.26
LINC00539-204ENST00000608957 UBAC1Q9BSL1 405 aa13.45□□□□□ -0.26
LINC00539-204ENST00000608957 SNX14Q9Y5W7 946 aa13.45□□□□□ -0.26
LINC00539-204ENST00000608957 MYH7BA7E2Y1 1941 aa13.45□□□□□ -0.26
LINC00539-204ENST00000608957 SLC27A2O14975 620 aa13.44□□□□□ -0.26
LINC00539-204ENST00000608957 USH1GQ495M9 461 aa13.44□□□□□ -0.26
LINC00539-204ENST00000608957 TAPT1Q6NXT6 567 aa13.44□□□□□ -0.26
LINC00539-204ENST00000608957 TBC1D5Q92609 795 aa13.44□□□□□ -0.26
LINC00539-204ENST00000608957 UPF3AQ9H1J1 476 aaKnown RBP13.44□□□□□ -0.26
LINC00539-204ENST00000608957 PDGFCQ9NRA1 345 aa13.44□□□□□ -0.26
LINC00539-204ENST00000608957 MAD2L2Q9UI95 211 aa13.44□□□□□ -0.26
LINC00539-204ENST00000608957 A0A1W2PQ45 241 aaPredicted RBP13.43□□□□□ -0.26
LINC00539-204ENST00000608957 A0A1W2PQY0 241 aa13.43□□□□□ -0.26
LINC00539-204ENST00000608957 PTPDC1A2A3K4 754 aa13.43□□□□□ -0.26
LINC00539-204ENST00000608957 ASB14A6NK59 587 aa13.43□□□□□ -0.26
LINC00539-204ENST00000608957 DUSP11O75319 330 aaKnown RBP13.43□□□□□ -0.26
LINC00539-204ENST00000608957 PARP1P09874 1014 aaKnown RBP13.43□□□□□ -0.26
LINC00539-204ENST00000608957 ALDH5A1P51649 535 aaPredicted RBP13.43□□□□□ -0.26
LINC00539-204ENST00000608957 QRICH1Q2TAL8 776 aa13.43□□□□□ -0.26
LINC00539-204ENST00000608957 TRIM60Q495X7 471 aa13.43□□□□□ -0.26
LINC00539-204ENST00000608957 EEPD1Q7L9B9 569 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms