RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 ZNF214Q9UL59 606 aaPredicted RBP16.75■□□□□ 0.27
USE1-210ENST00000601662 STRNO43815 780 aa16.74■□□□□ 0.27
USE1-210ENST00000601662 XRCC5P13010 732 aaKnown RBP16.74■□□□□ 0.27
USE1-210ENST00000601662 RXRAP19793 462 aa16.74■□□□□ 0.27
USE1-210ENST00000601662 ADORA2AP29274 412 aa16.74■□□□□ 0.27
USE1-210ENST00000601662 GRB14Q14449 540 aa16.74■□□□□ 0.27
USE1-210ENST00000601662 CCDC174Q6PII3 467 aa16.74■□□□□ 0.27
USE1-210ENST00000601662 CCDC144CPQ8IYA2 1237 aa16.74■□□□□ 0.27
USE1-210ENST00000601662 APBA2Q99767 749 aa16.74■□□□□ 0.27
USE1-210ENST00000601662 TEX13BQ9BXU2 312 aa16.74■□□□□ 0.27
USE1-210ENST00000601662 FAM217BQ9NTX9 383 aaPredicted RBP16.74■□□□□ 0.27
USE1-210ENST00000601662 RIPK3Q9Y572 518 aa16.74■□□□□ 0.27
USE1-210ENST00000601662 PLXNB2O15031 1838 aa16.73■□□□□ 0.27
USE1-210ENST00000601662 COL11A1P12107 1806 aaPredicted RBP16.73■□□□□ 0.27
USE1-210ENST00000601662 PARP14Q460N5 1801 aa16.73■□□□□ 0.27
USE1-210ENST00000601662 KLRF2D3W0D1 207 aa16.73■□□□□ 0.27
USE1-210ENST00000601662 FCER1AP12319 257 aa16.73■□□□□ 0.27
USE1-210ENST00000601662 IFNAR1P17181 557 aa16.73■□□□□ 0.27
USE1-210ENST00000601662 CDC27P30260 824 aa16.73■□□□□ 0.27
USE1-210ENST00000601662 ADD1P35611 737 aaKnown RBP16.73■□□□□ 0.27
USE1-210ENST00000601662 HMGN5P82970 282 aaKnown RBP16.73■□□□□ 0.27
USE1-210ENST00000601662 ZNF543Q08ER8 600 aa16.73■□□□□ 0.27
USE1-210ENST00000601662 RAB11FIP4Q86YS3 637 aa16.73■□□□□ 0.27
USE1-210ENST00000601662 NPLOC4Q8TAT6 608 aa16.73■□□□□ 0.27
USE1-210ENST00000601662 MMP19Q99542 508 aa16.73■□□□□ 0.27
USE1-210ENST00000601662 SLC38A10Q9HBR0 1119 aa16.73■□□□□ 0.27
USE1-210ENST00000601662 NCOA5Q9HCD5 579 aaKnown RBP16.73■□□□□ 0.27
USE1-210ENST00000601662 MAD2L2Q9UI95 211 aa16.73■□□□□ 0.27
USE1-210ENST00000601662 PRR12Q9ULL5 1215 aa16.73■□□□□ 0.27
USE1-210ENST00000601662 KIF3AQ9Y496 699 aa16.73■□□□□ 0.27
USE1-210ENST00000601662 COBLO75128 1261 aa16.72■□□□□ 0.27
USE1-210ENST00000601662 PGK2P07205 417 aa16.72■□□□□ 0.27
USE1-210ENST00000601662 GOLGA8HP0CJ92 632 aa16.72■□□□□ 0.27
USE1-210ENST00000601662 PRKAR2AP13861 404 aaKnown RBP16.72■□□□□ 0.27
USE1-210ENST00000601662 AKAP17AQ02040 695 aaKnown RBP16.72■□□□□ 0.27
USE1-210ENST00000601662 TMTC3Q6ZXV5 915 aa16.72■□□□□ 0.27
USE1-210ENST00000601662 TRMT44Q8IYL2 757 aaKnown RBP16.72■□□□□ 0.27
USE1-210ENST00000601662 TRIM22Q8IYM9 498 aa16.72■□□□□ 0.27
USE1-210ENST00000601662 DEFB118Q96PH6 123 aa16.72■□□□□ 0.27
USE1-210ENST00000601662 HOMER2Q9NSB8 354 aa16.72■□□□□ 0.27
USE1-210ENST00000601662 FLRT1Q9NZU1 646 aa16.72■□□□□ 0.27
USE1-210ENST00000601662 RBM27Q9P2N5 1060 aaKnown RBP16.72■□□□□ 0.27
USE1-210ENST00000601662 SMC3Q9UQE7 1217 aa16.72■□□□□ 0.27
USE1-210ENST00000601662 A0A0G2JMZ2 1700 aa16.72■□□□□ 0.27
USE1-210ENST00000601662 PLA2G6O60733 806 aa16.71■□□□□ 0.27
USE1-210ENST00000601662 GJB1P08034 283 aa16.71■□□□□ 0.27
USE1-210ENST00000601662 PDIA4P13667 645 aaKnown RBP16.71■□□□□ 0.27
USE1-210ENST00000601662 COPB2P35606 906 aa16.71■□□□□ 0.27
USE1-210ENST00000601662 SSRP1Q08945 709 aaKnown RBP16.71■□□□□ 0.27
USE1-210ENST00000601662 KCTD2Q14681 263 aa16.71■□□□□ 0.27
USE1-210ENST00000601662 NTRK3Q16288 839 aa16.71■□□□□ 0.27
USE1-210ENST00000601662 SYDE2Q5VT97 1194 aa16.71■□□□□ 0.27
USE1-210ENST00000601662 MFSD14CQ5VZR4 134 aa16.71■□□□□ 0.27
USE1-210ENST00000601662 AGBL1Q96MI9 1066 aa16.71■□□□□ 0.27
USE1-210ENST00000601662 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.71■□□□□ 0.27
USE1-210ENST00000601662 HMX1Q9NP08 348 aaPredicted RBP16.71■□□□□ 0.27
USE1-210ENST00000601662 TFRCP02786 760 aaKnown RBP16.7■□□□□ 0.26
USE1-210ENST00000601662 HOXC6P09630 235 aa16.7■□□□□ 0.26
USE1-210ENST00000601662 FDX1P10109 184 aa16.7■□□□□ 0.26
USE1-210ENST00000601662 CYP2C19P33261 490 aa16.7■□□□□ 0.26
USE1-210ENST00000601662 CACNB2Q08289 660 aaPredicted RBP16.7■□□□□ 0.26
USE1-210ENST00000601662 BTNL9Q6UXG8 535 aa16.7■□□□□ 0.26
USE1-210ENST00000601662 STAG2Q8N3U4 1231 aa16.7■□□□□ 0.26
USE1-210ENST00000601662 NSUN7Q8NE18 718 aaKnown RBP16.7■□□□□ 0.26
USE1-210ENST00000601662 U2AF1L4Q8WU68 220 aaKnown RBP16.7■□□□□ 0.26
USE1-210ENST00000601662 WASF1Q92558 559 aa16.7■□□□□ 0.26
USE1-210ENST00000601662 DDX11Q96FC9 970 aa16.7■□□□□ 0.26
USE1-210ENST00000601662 SPZ1Q9BXG8 430 aa16.7■□□□□ 0.26
USE1-210ENST00000601662 RNF26Q9BY78 433 aaPredicted RBP16.7■□□□□ 0.26
USE1-210ENST00000601662 UBA5Q9GZZ9 404 aa16.7■□□□□ 0.26
USE1-210ENST00000601662 CPVLQ9H3G5 476 aa16.7■□□□□ 0.26
USE1-210ENST00000601662 SLC5A4Q9NY91 659 aa16.7■□□□□ 0.26
USE1-210ENST00000601662 RPTORQ8N122 1335 aa16.7■□□□□ 0.26
USE1-210ENST00000601662 ATP2A1O14983 1001 aa16.69■□□□□ 0.26
USE1-210ENST00000601662 PRPF3O43395 683 aaKnown RBP16.69■□□□□ 0.26
USE1-210ENST00000601662 CTDNEP1O95476 244 aa16.69■□□□□ 0.26
USE1-210ENST00000601662 ALAS1P13196 640 aa16.69■□□□□ 0.26
USE1-210ENST00000601662 TAL1P17542 331 aaPredicted RBP16.69■□□□□ 0.26
USE1-210ENST00000601662 ST3GAL1Q11201 340 aa16.69■□□□□ 0.26
USE1-210ENST00000601662 ABRAQ8N0Z2 381 aa16.69■□□□□ 0.26
USE1-210ENST00000601662 SRBD1Q8N5C6 995 aaKnown RBP16.69■□□□□ 0.26
USE1-210ENST00000601662 SMARCC2Q8TAQ2 1214 aa16.69■□□□□ 0.26
USE1-210ENST00000601662 RIOX1Q9H6W3 641 aa16.69■□□□□ 0.26
USE1-210ENST00000601662 STK36Q9NRP7 1315 aa16.69■□□□□ 0.26
USE1-210ENST00000601662 PTPDC1A2A3K4 754 aa16.68■□□□□ 0.26
USE1-210ENST00000601662 PLEKHA8P1O95397 391 aa16.68■□□□□ 0.26
USE1-210ENST00000601662 SGPL1O95470 568 aa16.68■□□□□ 0.26
USE1-210ENST00000601662 CNGA1P29973 690 aa16.68■□□□□ 0.26
USE1-210ENST00000601662 CCND3P30281 292 aaPredicted RBP16.68■□□□□ 0.26
USE1-210ENST00000601662 GJA8P48165 433 aa16.68■□□□□ 0.26
USE1-210ENST00000601662 OAZ1P54368 228 aa16.68■□□□□ 0.26
USE1-210ENST00000601662 FUT2Q10981 343 aa16.68■□□□□ 0.26
USE1-210ENST00000601662 ANKRD35Q8N283 1001 aa16.68■□□□□ 0.26
USE1-210ENST00000601662 CCDC82Q8N4S0 544 aa16.68■□□□□ 0.26
USE1-210ENST00000601662 FAM184AQ8NB25 1140 aa16.68■□□□□ 0.26
USE1-210ENST00000601662 RRP36Q96EU6 259 aaKnown RBP16.68■□□□□ 0.26
USE1-210ENST00000601662 RNF146Q9NTX7 359 aa16.68■□□□□ 0.26
USE1-210ENST00000601662 CCPG1Q9ULG6 757 aa16.68■□□□□ 0.26
USE1-210ENST00000601662 V9GY48 417 aaPredicted RBP16.68■□□□□ 0.26
USE1-210ENST00000601662 ZNF536O15090 1300 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms