RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 CNTNAP5Q8WYK1 1306 aa22.41■■□□□ 1.18
UPF1-209ENST00000600310 PPP1R11O60927 126 aaPredicted RBP22.41■■□□□ 1.18
UPF1-209ENST00000600310 TRAF1Q13077 416 aa22.41■■□□□ 1.18
UPF1-209ENST00000600310 KCTD2Q14681 263 aa22.41■■□□□ 1.18
UPF1-209ENST00000600310 MUM1L1Q5H9M0 696 aa22.41■■□□□ 1.18
UPF1-209ENST00000600310 FBXO46Q6PJ61 603 aaPredicted RBP22.41■■□□□ 1.18
UPF1-209ENST00000600310 ABCB11O95342 1321 aa22.4■■□□□ 1.18
UPF1-209ENST00000600310 PFKFB2O60825 505 aa22.4■■□□□ 1.18
UPF1-209ENST00000600310 ADORA2AP29274 412 aa22.4■■□□□ 1.18
UPF1-209ENST00000600310 RGS2P41220 211 aa22.4■■□□□ 1.18
UPF1-209ENST00000600310 NTRK3Q16288 839 aa22.4■■□□□ 1.18
UPF1-209ENST00000600310 USH1GQ495M9 461 aa22.4■■□□□ 1.18
UPF1-209ENST00000600310 CLEC4DQ8WXI8 215 aa22.4■■□□□ 1.18
UPF1-209ENST00000600310 PIBF1Q8WXW3 757 aa22.4■■□□□ 1.18
UPF1-209ENST00000600310 SLKQ9H2G2 1235 aaPredicted RBP22.4■■□□□ 1.18
UPF1-209ENST00000600310 NCOA5Q9HCD5 579 aaKnown RBP22.4■■□□□ 1.18
UPF1-209ENST00000600310 SEC63Q9UGP8 760 aaKnown RBP22.4■■□□□ 1.18
UPF1-209ENST00000600310 PTCH2Q9Y6C5 1203 aa22.4■■□□□ 1.18
UPF1-209ENST00000600310 HOXC6P09630 235 aa22.39■■□□□ 1.17
UPF1-209ENST00000600310 XRCC5P13010 732 aaKnown RBP22.39■■□□□ 1.17
UPF1-209ENST00000600310 STK3Q13188 491 aa22.39■■□□□ 1.17
UPF1-209ENST00000600310 NOL8Q76FK4 1167 aaKnown RBP22.39■■□□□ 1.17
UPF1-209ENST00000600310 RAET1EQ8TD07 263 aa22.39■■□□□ 1.17
UPF1-209ENST00000600310 LIMCH1Q9UPQ0 1083 aa22.39■■□□□ 1.17
UPF1-209ENST00000600310 MRPL11Q9Y3B7 192 aaKnown RBP22.39■■□□□ 1.17
UPF1-209ENST00000600310 CCDC85CA6NKD9 419 aa22.38■■□□□ 1.17
UPF1-209ENST00000600310 COBLO75128 1261 aa22.38■■□□□ 1.17
UPF1-209ENST00000600310 IFNAR1P17181 557 aa22.38■■□□□ 1.17
UPF1-209ENST00000600310 CYP2B6P20813 491 aa22.38■■□□□ 1.17
UPF1-209ENST00000600310 SCRN1Q12765 414 aa22.38■■□□□ 1.17
UPF1-209ENST00000600310 ME3Q16798 604 aa22.38■■□□□ 1.17
UPF1-209ENST00000600310 ANKRD35Q8N283 1001 aa22.38■■□□□ 1.17
UPF1-209ENST00000600310 DDX11Q96FC9 970 aa22.38■■□□□ 1.17
UPF1-209ENST00000600310 MCOLN1Q9GZU1 580 aa22.38■■□□□ 1.17
UPF1-209ENST00000600310 A1CFQ9NQ94 594 aaKnown RBP22.38■■□□□ 1.17
UPF1-209ENST00000600310 PCDHA1Q9Y5I3 950 aa22.38■■□□□ 1.17
UPF1-209ENST00000600310 V9GY48 417 aaPredicted RBP22.38■■□□□ 1.17
UPF1-209ENST00000600310 DOCK3Q8IZD9 2030 aa22.38■■□□□ 1.17
UPF1-209ENST00000600310 DNAJC25-GNG10A0A024R161 153 aa22.37■■□□□ 1.17
UPF1-209ENST00000600310 NFIBO00712 420 aa22.37■■□□□ 1.17
UPF1-209ENST00000600310 ST18O60284 1047 aa22.37■■□□□ 1.17
UPF1-209ENST00000600310 DPP9Q86TI2 863 aa22.37■■□□□ 1.17
UPF1-209ENST00000600310 PXYLP1Q8TE99 480 aa22.37■■□□□ 1.17
UPF1-209ENST00000600310 APBA2Q99767 749 aa22.37■■□□□ 1.17
UPF1-209ENST00000600310 MAF1Q9H063 256 aa22.37■■□□□ 1.17
UPF1-209ENST00000600310 SLC5A4Q9NY91 659 aa22.37■■□□□ 1.17
UPF1-209ENST00000600310 hCG_1642624A0A1W2PR95 340 aa22.36■■□□□ 1.17
UPF1-209ENST00000600310 CPLX1O14810 134 aa22.36■■□□□ 1.17
UPF1-209ENST00000600310 PRPF3O43395 683 aaKnown RBP22.36■■□□□ 1.17
UPF1-209ENST00000600310 LARGE1O95461 756 aa22.36■■□□□ 1.17
UPF1-209ENST00000600310 CPLX2Q6PUV4 134 aaKnown RBP22.36■■□□□ 1.17
UPF1-209ENST00000600310 RGS22Q8NE09 1264 aa22.36■■□□□ 1.17
UPF1-209ENST00000600310 NPLOC4Q8TAT6 608 aa22.36■■□□□ 1.17
UPF1-209ENST00000600310 RNF26Q9BY78 433 aaPredicted RBP22.36■■□□□ 1.17
UPF1-209ENST00000600310 RBM27Q9P2N5 1060 aaKnown RBP22.36■■□□□ 1.17
UPF1-209ENST00000600310 DIS3Q9Y2L1 958 aaKnown RBP22.36■■□□□ 1.17
UPF1-209ENST00000600310 BAZ2BQ9UIF8 2168 aaKnown RBP22.36■■□□□ 1.17
UPF1-209ENST00000600310 PFASO15067 1338 aa22.35■■□□□ 1.17
UPF1-209ENST00000600310 ADCY3O60266 1144 aa22.35■■□□□ 1.17
UPF1-209ENST00000600310 PGK2P07205 417 aa22.35■■□□□ 1.17
UPF1-209ENST00000600310 ZNF792Q3KQV3 632 aa22.35■■□□□ 1.17
UPF1-209ENST00000600310 NSMFQ6X4W1 530 aa22.35■■□□□ 1.17
UPF1-209ENST00000600310 MCF2L2Q86YR7 1114 aa22.35■■□□□ 1.17
UPF1-209ENST00000600310 TRMT44Q8IYL2 757 aaKnown RBP22.35■■□□□ 1.17
UPF1-209ENST00000600310 SLAIN1Q8ND83 568 aa22.35■■□□□ 1.17
UPF1-209ENST00000600310 ZSCAN31Q96LW9 406 aaPredicted RBP22.35■■□□□ 1.17
UPF1-209ENST00000600310 CYP39A1Q9NYL5 469 aa22.35■■□□□ 1.17
UPF1-209ENST00000600310 ZNF236Q9UL36 1845 aa22.35■■□□□ 1.17
UPF1-209ENST00000600310 PLXNB2O15031 1838 aa22.34■■□□□ 1.17
UPF1-209ENST00000600310 GRK4P32298 578 aa22.34■■□□□ 1.17
UPF1-209ENST00000600310 BAATQ14032 418 aaPredicted RBP22.34■■□□□ 1.17
UPF1-209ENST00000600310 NECAB1Q8N987 351 aa22.34■■□□□ 1.17
UPF1-209ENST00000600310 FAM133AQ8N9E0 248 aa22.34■■□□□ 1.17
UPF1-209ENST00000600310 PHKBQ93100 1093 aa22.34■■□□□ 1.17
UPF1-209ENST00000600310 GTF3C6Q969F1 213 aa22.34■■□□□ 1.17
UPF1-209ENST00000600310 SMCHD1A6NHR9 2005 aa22.33■■□□□ 1.17
UPF1-209ENST00000600310 POTEB2H3BUK9 544 aa22.33■■□□□ 1.17
UPF1-209ENST00000600310 OPLAHO14841 1288 aa22.33■■□□□ 1.17
UPF1-209ENST00000600310 MCM2P49736 904 aa22.33■■□□□ 1.17
UPF1-209ENST00000600310 AKAP17AQ02040 695 aaKnown RBP22.33■■□□□ 1.17
UPF1-209ENST00000600310 GHRHRQ02643 423 aa22.33■■□□□ 1.17
UPF1-209ENST00000600310 RNF207Q6ZRF8 634 aa22.33■■□□□ 1.17
UPF1-209ENST00000600310 SLC26A6Q9BXS9 759 aa22.33■■□□□ 1.17
UPF1-209ENST00000600310 PTPDC1A2A3K4 754 aa22.32■■□□□ 1.16
UPF1-209ENST00000600310 hCG_1984214I3L0E3 225 aa22.32■■□□□ 1.16
UPF1-209ENST00000600310 CDKL5O76039 1030 aa22.32■■□□□ 1.16
UPF1-209ENST00000600310 ELNP15502 786 aa22.32■■□□□ 1.16
UPF1-209ENST00000600310 RGS19P49795 217 aa22.32■■□□□ 1.16
UPF1-209ENST00000600310 RPS6P62753 249 aaKnown RBP22.32■■□□□ 1.16
UPF1-209ENST00000600310 SSRP1Q08945 709 aaKnown RBP22.32■■□□□ 1.16
UPF1-209ENST00000600310 PKN1Q16512 942 aa22.32■■□□□ 1.16
UPF1-209ENST00000600310 CCL14Q16627 93 aa22.32■■□□□ 1.16
UPF1-209ENST00000600310 PFKFB3Q16875 520 aaPredicted RBP22.32■■□□□ 1.16
UPF1-209ENST00000600310 OLFML2BQ68BL8 750 aa22.32■■□□□ 1.16
UPF1-209ENST00000600310 HEATR3Q7Z4Q2 680 aa22.32■■□□□ 1.16
UPF1-209ENST00000600310 TRIM22Q8IYM9 498 aa22.32■■□□□ 1.16
UPF1-209ENST00000600310 SAMD3Q8N6K7 520 aa22.32■■□□□ 1.16
UPF1-209ENST00000600310 ZNF713Q8N859 430 aaPredicted RBP22.32■■□□□ 1.16
UPF1-209ENST00000600310 TRIB2Q92519 343 aa22.32■■□□□ 1.16
UPF1-209ENST00000600310 TBC1D5Q92609 795 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms