RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ABCB5Q2M3G0 1257 aa16.36■□□□□ 0.21
VRK3-217ENST00000599538 RASSF8Q8NHQ8 419 aa16.36■□□□□ 0.21
VRK3-217ENST00000599538 C16orf45Q96MC5 204 aaPredicted RBP16.36■□□□□ 0.21
VRK3-217ENST00000599538 GDAQ9Y2T3 454 aa16.36■□□□□ 0.21
VRK3-217ENST00000599538 A0A1W2PRG0 241 aa16.35■□□□□ 0.21
VRK3-217ENST00000599538 VIL1P09327 827 aaKnown RBP16.35■□□□□ 0.21
VRK3-217ENST00000599538 CDK11BP21127 795 aaKnown RBP16.35■□□□□ 0.21
VRK3-217ENST00000599538 TNNI2P48788 182 aa16.35■□□□□ 0.21
VRK3-217ENST00000599538 CLK2P49760 499 aaKnown RBP16.35■□□□□ 0.21
VRK3-217ENST00000599538 QRICH1Q2TAL8 776 aa16.35■□□□□ 0.21
VRK3-217ENST00000599538 VSTM4Q8IW00 320 aa16.35■□□□□ 0.21
VRK3-217ENST00000599538 RTKN2Q8IZC4 609 aa16.35■□□□□ 0.21
VRK3-217ENST00000599538 PSMD1Q99460 953 aa16.35■□□□□ 0.21
VRK3-217ENST00000599538 MMTAG2Q9BU76 263 aaKnown RBP16.35■□□□□ 0.21
VRK3-217ENST00000599538 RIC8AQ9NPQ8 531 aa16.35■□□□□ 0.21
VRK3-217ENST00000599538 MAPK8IP1Q9UQF2 711 aa16.35■□□□□ 0.21
VRK3-217ENST00000599538 SYNRGQ9UMZ2 1314 aa16.35■□□□□ 0.21
VRK3-217ENST00000599538 F5H6K3 240 aa16.34■□□□□ 0.21
VRK3-217ENST00000599538 RPN1P04843 607 aaKnown RBP16.34■□□□□ 0.21
VRK3-217ENST00000599538 TAL1P17542 331 aaPredicted RBP16.34■□□□□ 0.21
VRK3-217ENST00000599538 PLCG1P19174 1290 aa16.34■□□□□ 0.21
VRK3-217ENST00000599538 TXKP42681 527 aa16.34■□□□□ 0.21
VRK3-217ENST00000599538 KLRC3Q07444 240 aa16.34■□□□□ 0.21
VRK3-217ENST00000599538 SF3B2Q13435 895 aaKnown RBP16.34■□□□□ 0.21
VRK3-217ENST00000599538 TMEM179Q6ZVK1 233 aa16.34■□□□□ 0.21
VRK3-217ENST00000599538 APTXQ7Z2E3 356 aaKnown RBP16.34■□□□□ 0.21
VRK3-217ENST00000599538 CABP7Q86V35 215 aa16.34■□□□□ 0.21
VRK3-217ENST00000599538 GJA10Q969M2 543 aa16.34■□□□□ 0.21
VRK3-217ENST00000599538 MTMR9Q96QG7 549 aa16.34■□□□□ 0.21
VRK3-217ENST00000599538 CTNND2Q9UQB3 1225 aa16.34■□□□□ 0.21
VRK3-217ENST00000599538 CBFA2T2O43439 604 aa16.34■□□□□ 0.21
VRK3-217ENST00000599538 SPATA1Q5VX52 437 aa16.34■□□□□ 0.21
VRK3-217ENST00000599538 PYM1Q9BRP8 204 aaKnown RBP16.34■□□□□ 0.21
VRK3-217ENST00000599538 MYH7BA7E2Y1 1941 aa16.33■□□□□ 0.21
VRK3-217ENST00000599538 USP17L15C9J2P7 530 aa16.33■□□□□ 0.21
VRK3-217ENST00000599538 USP17L13C9JLJ4 530 aa16.33■□□□□ 0.21
VRK3-217ENST00000599538 USP17L11C9JVI0 530 aa16.33■□□□□ 0.21
VRK3-217ENST00000599538 USP17L18D6R9N7 530 aa16.33■□□□□ 0.21
VRK3-217ENST00000599538 USP17L22D6RA61 530 aa16.33■□□□□ 0.21
VRK3-217ENST00000599538 USP17L17D6RBQ6 530 aa16.33■□□□□ 0.21
VRK3-217ENST00000599538 USP17L19D6RCP7 530 aa16.33■□□□□ 0.21
VRK3-217ENST00000599538 USP17L20D6RJB6 530 aa16.33■□□□□ 0.21
VRK3-217ENST00000599538 NDUFB10O96000 172 aa16.33■□□□□ 0.21
VRK3-217ENST00000599538 USP17L24Q0WX57 530 aa16.33■□□□□ 0.21
VRK3-217ENST00000599538 USP17L6PQ6QN14 398 aa16.33■□□□□ 0.21
VRK3-217ENST00000599538 KBTBD4Q9NVX7 518 aa16.33■□□□□ 0.21
VRK3-217ENST00000599538 TRMT1Q9NXH9 659 aaKnown RBP16.33■□□□□ 0.21
VRK3-217ENST00000599538 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.33■□□□□ 0.21
VRK3-217ENST00000599538 ZNF70Q9UC06 446 aaPredicted RBP16.33■□□□□ 0.21
VRK3-217ENST00000599538 UQCRHLA0A096LP55 91 aa16.33■□□□□ 0.2
VRK3-217ENST00000599538 MYO1BO43795 1136 aa16.33■□□□□ 0.2
VRK3-217ENST00000599538 KLRC4O43908 158 aa16.33■□□□□ 0.2
VRK3-217ENST00000599538 ZBTB7AO95365 584 aa16.33■□□□□ 0.2
VRK3-217ENST00000599538 UQCRHP07919 91 aa16.33■□□□□ 0.2
VRK3-217ENST00000599538 SFPQP23246 707 aaKnown RBP eCLIP16.33■□□□□ 0.2
VRK3-217ENST00000599538 CDC37Q16543 378 aaPredicted RBP16.33■□□□□ 0.2
VRK3-217ENST00000599538 IGSF22Q8N9C0 903 aa16.33■□□□□ 0.2
VRK3-217ENST00000599538 DCAF4Q8WV16 495 aa16.33■□□□□ 0.2
VRK3-217ENST00000599538 UIMC1Q96RL1 719 aa16.33■□□□□ 0.2
VRK3-217ENST00000599538 PSTPIP2Q9H939 334 aa16.33■□□□□ 0.2
VRK3-217ENST00000599538 SCAF8Q9UPN6 1271 aaKnown RBP16.33■□□□□ 0.2
VRK3-217ENST00000599538 TEX33O43247 280 aa16.32■□□□□ 0.2
VRK3-217ENST00000599538 PRCPP42785 496 aa16.32■□□□□ 0.2
VRK3-217ENST00000599538 ECE1P42892 770 aa16.32■□□□□ 0.2
VRK3-217ENST00000599538 TERF1P54274 439 aa16.32■□□□□ 0.2
VRK3-217ENST00000599538 DLGAP5Q15398 846 aa16.32■□□□□ 0.2
VRK3-217ENST00000599538 CALCRLQ16602 461 aa16.32■□□□□ 0.2
VRK3-217ENST00000599538 PPP1R18Q6NYC8 613 aa16.32■□□□□ 0.2
VRK3-217ENST00000599538 SPICE1Q8N0Z3 855 aa16.32■□□□□ 0.2
VRK3-217ENST00000599538 CCDC150Q8NCX0 1101 aa16.32■□□□□ 0.2
VRK3-217ENST00000599538 CUL5Q93034 780 aa16.32■□□□□ 0.2
VRK3-217ENST00000599538 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.32■□□□□ 0.2
VRK3-217ENST00000599538 PCDHA1Q9Y5I3 950 aa16.32■□□□□ 0.2
VRK3-217ENST00000599538 CNTNAP1P78357 1384 aa16.32■□□□□ 0.2
VRK3-217ENST00000599538 SMCHD1A6NHR9 2005 aa16.32■□□□□ 0.2
VRK3-217ENST00000599538 SHTN1A0MZ66 631 aa16.31■□□□□ 0.2
VRK3-217ENST00000599538 POTEMA6NI47 508 aa16.31■□□□□ 0.2
VRK3-217ENST00000599538 TPD52L1Q16890 204 aaPredicted RBP16.31■□□□□ 0.2
VRK3-217ENST00000599538 KMT5BQ4FZB7 885 aa16.31■□□□□ 0.2
VRK3-217ENST00000599538 KIAA1755Q5JYT7 1200 aa16.31■□□□□ 0.2
VRK3-217ENST00000599538 RBM26Q5T8P6 1007 aaKnown RBP16.31■□□□□ 0.2
VRK3-217ENST00000599538 ZNF658Q5TYW1 1059 aaPredicted RBP16.31■□□□□ 0.2
VRK3-217ENST00000599538 CDKAL1Q5VV42 579 aa16.31■□□□□ 0.2
VRK3-217ENST00000599538 AK8Q96MA6 479 aa16.31■□□□□ 0.2
VRK3-217ENST00000599538 P2RX7Q99572 595 aaKnown RBP16.31■□□□□ 0.2
VRK3-217ENST00000599538 NUDT12Q9BQG2 462 aa16.31■□□□□ 0.2
VRK3-217ENST00000599538 ARFGEF1Q9Y6D6 1849 aa16.31■□□□□ 0.2
VRK3-217ENST00000599538 NR1I3Q14994 352 aa16.31■□□□□ 0.2
VRK3-217ENST00000599538 PPP4R3BQ5MIZ7 849 aa16.31■□□□□ 0.2
VRK3-217ENST00000599538 E4F1Q66K89 784 aaPredicted RBP16.31■□□□□ 0.2
VRK3-217ENST00000599538 ATF5Q9Y2D1 282 aaPredicted RBP16.31■□□□□ 0.2
VRK3-217ENST00000599538 MRPL12P52815 198 aaKnown RBP16.3■□□□□ 0.2
VRK3-217ENST00000599538 DHX8Q14562 1220 aaKnown RBP16.3■□□□□ 0.2
VRK3-217ENST00000599538 CT47A1Q5JQC4 288 aaPredicted RBP16.3■□□□□ 0.2
VRK3-217ENST00000599538 ACER1Q8TDN7 264 aa16.3■□□□□ 0.2
VRK3-217ENST00000599538 TMEM39BQ9GZU3 492 aa16.3■□□□□ 0.2
VRK3-217ENST00000599538 VEZTQ9HBM0 779 aa16.3■□□□□ 0.2
VRK3-217ENST00000599538 A0A1B0GTH6 734 aa16.3■□□□□ 0.2
VRK3-217ENST00000599538 TRIM49BA6NDI0 452 aa16.3■□□□□ 0.2
VRK3-217ENST00000599538 TPM2P07951 284 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms