RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 PTPREP23469 700 aa16.62■□□□□ 0.25
VRK3-213ENST00000597215 SCRN1Q12765 414 aa16.62■□□□□ 0.25
VRK3-213ENST00000597215 ME3Q16798 604 aa16.62■□□□□ 0.25
VRK3-213ENST00000597215 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.62■□□□□ 0.25
VRK3-213ENST00000597215 ABRAQ8N0Z2 381 aa16.62■□□□□ 0.25
VRK3-213ENST00000597215 ZSCAN31Q96LW9 406 aaPredicted RBP16.62■□□□□ 0.25
VRK3-213ENST00000597215 MMP19Q99542 508 aa16.62■□□□□ 0.25
VRK3-213ENST00000597215 NUDT12Q9BQG2 462 aa16.62■□□□□ 0.25
VRK3-213ENST00000597215 RBM27Q9P2N5 1060 aaKnown RBP16.62■□□□□ 0.25
VRK3-213ENST00000597215 PPP1R11O60927 126 aaPredicted RBP16.61■□□□□ 0.25
VRK3-213ENST00000597215 LARGE1O95461 756 aa16.61■□□□□ 0.25
VRK3-213ENST00000597215 TAL1P17542 331 aaPredicted RBP16.61■□□□□ 0.25
VRK3-213ENST00000597215 MCM2P49736 904 aa16.61■□□□□ 0.25
VRK3-213ENST00000597215 PRKCZQ05513 592 aa16.61■□□□□ 0.25
VRK3-213ENST00000597215 GRB14Q14449 540 aa16.61■□□□□ 0.25
VRK3-213ENST00000597215 KCTD2Q14681 263 aa16.61■□□□□ 0.25
VRK3-213ENST00000597215 NTRK3Q16288 839 aa16.61■□□□□ 0.25
VRK3-213ENST00000597215 SH2B1Q9NRF2 756 aaPredicted RBP16.61■□□□□ 0.25
VRK3-213ENST00000597215 MRPL11Q9Y3B7 192 aaKnown RBP16.61■□□□□ 0.25
VRK3-213ENST00000597215 ZNFX1Q9P2E3 1918 aaKnown RBP16.6■□□□□ 0.25
VRK3-213ENST00000597215 RBBP6Q7Z6E9 1792 aaKnown RBP16.6■□□□□ 0.25
VRK3-213ENST00000597215 CDKL5O76039 1030 aa16.6■□□□□ 0.25
VRK3-213ENST00000597215 ADORA2AP29274 412 aa16.6■□□□□ 0.25
VRK3-213ENST00000597215 AKAP17AQ02040 695 aaKnown RBP16.6■□□□□ 0.25
VRK3-213ENST00000597215 PKN2Q16513 984 aaKnown RBP16.6■□□□□ 0.25
VRK3-213ENST00000597215 MUM1L1Q5H9M0 696 aa16.6■□□□□ 0.25
VRK3-213ENST00000597215 MORN1Q5T089 497 aa16.6■□□□□ 0.25
VRK3-213ENST00000597215 TRIM22Q8IYM9 498 aa16.6■□□□□ 0.25
VRK3-213ENST00000597215 ANKRD35Q8N283 1001 aa16.6■□□□□ 0.25
VRK3-213ENST00000597215 GTF3C6Q969F1 213 aa16.6■□□□□ 0.25
VRK3-213ENST00000597215 GJD2Q9UKL4 321 aa16.6■□□□□ 0.25
VRK3-213ENST00000597215 GABRQQ9UN88 632 aa16.6■□□□□ 0.25
VRK3-213ENST00000597215 PCDHA1Q9Y5I3 950 aa16.6■□□□□ 0.25
VRK3-213ENST00000597215 V9GY48 417 aaPredicted RBP16.6■□□□□ 0.25
VRK3-213ENST00000597215 PFASO15067 1338 aa16.6■□□□□ 0.25
VRK3-213ENST00000597215 hCG_1642624A0A1W2PR95 340 aa16.59■□□□□ 0.25
VRK3-213ENST00000597215 PRPF3O43395 683 aaKnown RBP16.59■□□□□ 0.25
VRK3-213ENST00000597215 RGS2P41220 211 aa16.59■□□□□ 0.25
VRK3-213ENST00000597215 FLT3LGP49771 235 aa16.59■□□□□ 0.25
VRK3-213ENST00000597215 SSRP1Q08945 709 aaKnown RBP16.59■□□□□ 0.25
VRK3-213ENST00000597215 MAP2K5Q13163 448 aa16.59■□□□□ 0.25
VRK3-213ENST00000597215 IRF5Q13568 498 aa16.59■□□□□ 0.25
VRK3-213ENST00000597215 NECAB1Q8N987 351 aa16.59■□□□□ 0.25
VRK3-213ENST00000597215 RAET1EQ8TD07 263 aa16.59■□□□□ 0.25
VRK3-213ENST00000597215 CLEC4DQ8WXI8 215 aa16.59■□□□□ 0.25
VRK3-213ENST00000597215 PHKBQ93100 1093 aa16.59■□□□□ 0.25
VRK3-213ENST00000597215 DDX11Q96FC9 970 aa16.59■□□□□ 0.25
VRK3-213ENST00000597215 SLC26A6Q9BXS9 759 aa16.59■□□□□ 0.25
VRK3-213ENST00000597215 RNF26Q9BY78 433 aaPredicted RBP16.59■□□□□ 0.25
VRK3-213ENST00000597215 SLC5A4Q9NY91 659 aa16.59■□□□□ 0.25
VRK3-213ENST00000597215 hCG_1984214I3L0E3 225 aa16.58■□□□□ 0.24
VRK3-213ENST00000597215 NFIBO00712 420 aa16.58■□□□□ 0.24
VRK3-213ENST00000597215 NSMFQ6X4W1 530 aa16.58■□□□□ 0.24
VRK3-213ENST00000597215 HEATR3Q7Z4Q2 680 aa16.58■□□□□ 0.24
VRK3-213ENST00000597215 DPP9Q86TI2 863 aa16.58■□□□□ 0.24
VRK3-213ENST00000597215 MCF2L2Q86YR7 1114 aa16.58■□□□□ 0.24
VRK3-213ENST00000597215 ZNF713Q8N859 430 aaPredicted RBP16.58■□□□□ 0.24
VRK3-213ENST00000597215 USP6NLQ92738 828 aa16.58■□□□□ 0.24
VRK3-213ENST00000597215 APBA2Q99767 749 aa16.58■□□□□ 0.24
VRK3-213ENST00000597215 MAF1Q9H063 256 aa16.58■□□□□ 0.24
VRK3-213ENST00000597215 A1CFQ9NQ94 594 aaKnown RBP16.58■□□□□ 0.24
VRK3-213ENST00000597215 PTPN22Q9Y2R2 807 aa16.58■□□□□ 0.24
VRK3-213ENST00000597215 PLXNA1Q9UIW2 1896 aa16.57■□□□□ 0.24
VRK3-213ENST00000597215 CD2BP2O95400 341 aaKnown RBP16.57■□□□□ 0.24
VRK3-213ENST00000597215 HOXC6P09630 235 aa16.57■□□□□ 0.24
VRK3-213ENST00000597215 XRCC5P13010 732 aaKnown RBP16.57■□□□□ 0.24
VRK3-213ENST00000597215 SCG2P13521 617 aa16.57■□□□□ 0.24
VRK3-213ENST00000597215 CYP2B6P20813 491 aa16.57■□□□□ 0.24
VRK3-213ENST00000597215 PFKFB3Q16875 520 aaPredicted RBP16.57■□□□□ 0.24
VRK3-213ENST00000597215 FBXO46Q6PJ61 603 aaPredicted RBP16.57■□□□□ 0.24
VRK3-213ENST00000597215 RGS22Q8NE09 1264 aa16.57■□□□□ 0.24
VRK3-213ENST00000597215 CYP39A1Q9NYL5 469 aa16.57■□□□□ 0.24
VRK3-213ENST00000597215 PTCH2Q9Y6C5 1203 aa16.57■□□□□ 0.24
VRK3-213ENST00000597215 STK36Q9NRP7 1315 aa16.56■□□□□ 0.24
VRK3-213ENST00000597215 DNAJC25-GNG10A0A024R161 153 aa16.56■□□□□ 0.24
VRK3-213ENST00000597215 PTPDC1A2A3K4 754 aa16.56■□□□□ 0.24
VRK3-213ENST00000597215 COBLO75128 1261 aa16.56■□□□□ 0.24
VRK3-213ENST00000597215 WWC2Q6AWC2 1192 aa16.56■□□□□ 0.24
VRK3-213ENST00000597215 PPP1R18Q6NYC8 613 aa16.56■□□□□ 0.24
VRK3-213ENST00000597215 RNF207Q6ZRF8 634 aa16.56■□□□□ 0.24
VRK3-213ENST00000597215 CCDC83Q8IWF9 413 aa16.56■□□□□ 0.24
VRK3-213ENST00000597215 TRMT44Q8IYL2 757 aaKnown RBP16.56■□□□□ 0.24
VRK3-213ENST00000597215 SAMD3Q8N6K7 520 aa16.56■□□□□ 0.24
VRK3-213ENST00000597215 GPKOWQ92917 476 aaPredicted RBP eCLIP16.56■□□□□ 0.24
VRK3-213ENST00000597215 DIS3Q9Y2L1 958 aaKnown RBP16.56■□□□□ 0.24
VRK3-213ENST00000597215 POTEB2H3BUK9 544 aa16.55■□□□□ 0.24
VRK3-213ENST00000597215 OPLAHO14841 1288 aa16.55■□□□□ 0.24
VRK3-213ENST00000597215 PPFIA3O75145 1194 aa16.55■□□□□ 0.24
VRK3-213ENST00000597215 DEXIO95424 95 aa16.55■□□□□ 0.24
VRK3-213ENST00000597215 CTDNEP1O95476 244 aa16.55■□□□□ 0.24
VRK3-213ENST00000597215 PGK2P07205 417 aa16.55■□□□□ 0.24
VRK3-213ENST00000597215 ST3GAL1Q11201 340 aa16.55■□□□□ 0.24
VRK3-213ENST00000597215 BAATQ14032 418 aaPredicted RBP16.55■□□□□ 0.24
VRK3-213ENST00000597215 PKN1Q16512 942 aa16.55■□□□□ 0.24
VRK3-213ENST00000597215 SLC30A10Q6XR72 485 aa16.55■□□□□ 0.24
VRK3-213ENST00000597215 SLAIN1Q8ND83 568 aa16.55■□□□□ 0.24
VRK3-213ENST00000597215 TMX3Q96JJ7 454 aa16.55■□□□□ 0.24
VRK3-213ENST00000597215 BARHL2Q9NY43 387 aa16.55■□□□□ 0.24
VRK3-213ENST00000597215 HTTP42858 3142 aa16.54■□□□□ 0.24
VRK3-213ENST00000597215 STXBP3O00186 592 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms