RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 FCER1AP12319 257 aa17.94■□□□□ 0.46
SS18-216ENST00000580751 PTPREP23469 700 aa17.94■□□□□ 0.46
SS18-216ENST00000580751 ADD1P35611 737 aaKnown RBP17.94■□□□□ 0.46
SS18-216ENST00000580751 CCT2P78371 535 aaKnown RBP17.94■□□□□ 0.46
SS18-216ENST00000580751 CAP1Q01518 475 aa17.94■□□□□ 0.46
SS18-216ENST00000580751 STK3Q13188 491 aa17.94■□□□□ 0.46
SS18-216ENST00000580751 KCTD2Q14681 263 aa17.94■□□□□ 0.46
SS18-216ENST00000580751 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.94■□□□□ 0.46
SS18-216ENST00000580751 CCDC82Q8N4S0 544 aa17.94■□□□□ 0.46
SS18-216ENST00000580751 TRERF1Q96PN7 1200 aa17.94■□□□□ 0.46
SS18-216ENST00000580751 NUDT12Q9BQG2 462 aa17.94■□□□□ 0.46
SS18-216ENST00000580751 HOMER2Q9NSB8 354 aa17.94■□□□□ 0.46
SS18-216ENST00000580751 RBM27Q9P2N5 1060 aaKnown RBP17.94■□□□□ 0.46
SS18-216ENST00000580751 SRRDQ9UH36 339 aa17.94■□□□□ 0.46
SS18-216ENST00000580751 PLXNB2O15031 1838 aa17.93■□□□□ 0.46
SS18-216ENST00000580751 PRKCZQ05513 592 aa17.93■□□□□ 0.46
SS18-216ENST00000580751 FUT2Q10981 343 aa17.93■□□□□ 0.46
SS18-216ENST00000580751 GRB14Q14449 540 aa17.93■□□□□ 0.46
SS18-216ENST00000580751 PKN2Q16513 984 aaKnown RBP17.93■□□□□ 0.46
SS18-216ENST00000580751 USH1GQ495M9 461 aa17.93■□□□□ 0.46
SS18-216ENST00000580751 MMP19Q99542 508 aa17.93■□□□□ 0.46
SS18-216ENST00000580751 NCOA5Q9HCD5 579 aaKnown RBP17.93■□□□□ 0.46
SS18-216ENST00000580751 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.93■□□□□ 0.46
SS18-216ENST00000580751 CDKL5O76039 1030 aa17.92■□□□□ 0.46
SS18-216ENST00000580751 HSP90AA1P07900 732 aaKnown RBP17.92■□□□□ 0.46
SS18-216ENST00000580751 PDIA4P13667 645 aaKnown RBP17.92■□□□□ 0.46
SS18-216ENST00000580751 IFNAR1P17181 557 aa17.92■□□□□ 0.46
SS18-216ENST00000580751 RGS2P41220 211 aa17.92■□□□□ 0.46
SS18-216ENST00000580751 MORN1Q5T089 497 aa17.92■□□□□ 0.46
SS18-216ENST00000580751 PIBF1Q8WXW3 757 aa17.92■□□□□ 0.46
SS18-216ENST00000580751 MRPL11Q9Y3B7 192 aaKnown RBP17.92■□□□□ 0.46
SS18-216ENST00000580751 PCDHA1Q9Y5I3 950 aa17.92■□□□□ 0.46
SS18-216ENST00000580751 PFASO15067 1338 aa17.92■□□□□ 0.46
SS18-216ENST00000580751 DOCK3Q8IZD9 2030 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 PPP1R11O60927 126 aaPredicted RBP17.91■□□□□ 0.46
SS18-216ENST00000580751 ADORA2AP29274 412 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 FLT3LGP49771 235 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 AKAP17AQ02040 695 aaKnown RBP17.91■□□□□ 0.46
SS18-216ENST00000580751 SCRN1Q12765 414 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 MAP2K5Q13163 448 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 IRF5Q13568 498 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 NTRK3Q16288 839 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 ME3Q16798 604 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 TRIM22Q8IYM9 498 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 ANKRD35Q8N283 1001 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 GTF3C6Q969F1 213 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 LLPHQ9BRT6 129 aaKnown RBP17.91■□□□□ 0.46
SS18-216ENST00000580751 RNF26Q9BY78 433 aaPredicted RBP17.91■□□□□ 0.46
SS18-216ENST00000580751 MAF1Q9H063 256 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 SLC5A4Q9NY91 659 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 GJD2Q9UKL4 321 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 PTPN22Q9Y2R2 807 aa17.91■□□□□ 0.46
SS18-216ENST00000580751 hCG_1984214I3L0E3 225 aa17.9■□□□□ 0.46
SS18-216ENST00000580751 TAL1P17542 331 aaPredicted RBP17.9■□□□□ 0.46
SS18-216ENST00000580751 MUM1L1Q5H9M0 696 aa17.9■□□□□ 0.46
SS18-216ENST00000580751 FBXO46Q6PJ61 603 aaPredicted RBP17.9■□□□□ 0.46
SS18-216ENST00000580751 MCF2L2Q86YR7 1114 aa17.9■□□□□ 0.46
SS18-216ENST00000580751 ZNF713Q8N859 430 aaPredicted RBP17.9■□□□□ 0.46
SS18-216ENST00000580751 RAET1EQ8TD07 263 aa17.9■□□□□ 0.46
SS18-216ENST00000580751 USP6NLQ92738 828 aa17.9■□□□□ 0.46
SS18-216ENST00000580751 DDX11Q96FC9 970 aa17.9■□□□□ 0.46
SS18-216ENST00000580751 APBA2Q99767 749 aa17.9■□□□□ 0.46
SS18-216ENST00000580751 GABRQQ9UN88 632 aa17.9■□□□□ 0.46
SS18-216ENST00000580751 V9GY48 417 aaPredicted RBP17.9■□□□□ 0.46
SS18-216ENST00000580751 RBBP6Q7Z6E9 1792 aaKnown RBP17.89■□□□□ 0.45
SS18-216ENST00000580751 NFIBO00712 420 aa17.89■□□□□ 0.45
SS18-216ENST00000580751 PRPF3O43395 683 aaKnown RBP17.89■□□□□ 0.45
SS18-216ENST00000580751 LARGE1O95461 756 aa17.89■□□□□ 0.45
SS18-216ENST00000580751 HOXC6P09630 235 aa17.89■□□□□ 0.45
SS18-216ENST00000580751 XRCC5P13010 732 aaKnown RBP17.89■□□□□ 0.45
SS18-216ENST00000580751 NSMFQ6X4W1 530 aa17.89■□□□□ 0.45
SS18-216ENST00000580751 DPP9Q86TI2 863 aa17.89■□□□□ 0.45
SS18-216ENST00000580751 RGS22Q8NE09 1264 aa17.89■□□□□ 0.45
SS18-216ENST00000580751 CLEC4DQ8WXI8 215 aa17.89■□□□□ 0.45
SS18-216ENST00000580751 PHKBQ93100 1093 aa17.89■□□□□ 0.45
SS18-216ENST00000580751 SLC26A6Q9BXS9 759 aa17.89■□□□□ 0.45
SS18-216ENST00000580751 A1CFQ9NQ94 594 aaKnown RBP17.89■□□□□ 0.45
SS18-216ENST00000580751 HTTP42858 3142 aa17.88■□□□□ 0.45
SS18-216ENST00000580751 SMCHD1A6NHR9 2005 aa17.88■□□□□ 0.45
SS18-216ENST00000580751 hCG_1642624A0A1W2PR95 340 aa17.88■□□□□ 0.45
SS18-216ENST00000580751 SSRP1Q08945 709 aaKnown RBP17.88■□□□□ 0.45
SS18-216ENST00000580751 PFKFB3Q16875 520 aaPredicted RBP17.88■□□□□ 0.45
SS18-216ENST00000580751 PPP1R18Q6NYC8 613 aa17.88■□□□□ 0.45
SS18-216ENST00000580751 RNF207Q6ZRF8 634 aa17.88■□□□□ 0.45
SS18-216ENST00000580751 HEATR3Q7Z4Q2 680 aa17.88■□□□□ 0.45
SS18-216ENST00000580751 TRMT44Q8IYL2 757 aaKnown RBP17.88■□□□□ 0.45
SS18-216ENST00000580751 CYP39A1Q9NYL5 469 aa17.88■□□□□ 0.45
SS18-216ENST00000580751 CIZ1Q9ULV3 898 aaPredicted RBP17.88■□□□□ 0.45
SS18-216ENST00000580751 PTCH2Q9Y6C5 1203 aa17.88■□□□□ 0.45
SS18-216ENST00000580751 DNAJC25-GNG10A0A024R161 153 aa17.87■□□□□ 0.45
SS18-216ENST00000580751 PTPDC1A2A3K4 754 aa17.87■□□□□ 0.45
SS18-216ENST00000580751 SCG2P13521 617 aa17.87■□□□□ 0.45
SS18-216ENST00000580751 CYP2B6P20813 491 aa17.87■□□□□ 0.45
SS18-216ENST00000580751 SAMD3Q8N6K7 520 aa17.87■□□□□ 0.45
SS18-216ENST00000580751 NECAB1Q8N987 351 aa17.87■□□□□ 0.45
SS18-216ENST00000580751 SLAIN1Q8ND83 568 aa17.87■□□□□ 0.45
SS18-216ENST00000580751 PXYLP1Q8TE99 480 aa17.87■□□□□ 0.45
SS18-216ENST00000580751 DIS3Q9Y2L1 958 aaKnown RBP17.87■□□□□ 0.45
SS18-216ENST00000580751 STK36Q9NRP7 1315 aa17.87■□□□□ 0.45
SS18-216ENST00000580751 POTEB2H3BUK9 544 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms