RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 ALAS1P13196 640 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 CPA1P15085 419 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 CYP2B6P20813 491 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 ADORA2AP29274 412 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 SNAP25P60880 206 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 COL9A3Q14050 684 aaPredicted RBP12.81□□□□□ -0.36
CHD3-216ENST00000573936 APOA5Q6Q788 366 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 UBE2Q1Q7Z7E8 422 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 FANCBQ8NB91 859 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 IL17RAQ96F46 866 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 DDX11Q96FC9 970 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 TRERF1Q96PN7 1200 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 AGXT2Q9BYV1 514 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 MAF1Q9H063 256 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 RIOX1Q9H6W3 641 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 ACAD9Q9H845 621 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 JMJD4Q9H9V9 463 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 RIPK3Q9Y572 518 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 KLF18A0A0U1RQI7 1052 aa12.8□□□□□ -0.36
CHD3-216ENST00000573936 CCDC196A0A1B0GTZ2 297 aa12.8□□□□□ -0.36
CHD3-216ENST00000573936 CDC37Q16543 378 aaPredicted RBP12.8□□□□□ -0.36
CHD3-216ENST00000573936 FBXO11Q86XK2 927 aa12.8□□□□□ -0.36
CHD3-216ENST00000573936 ANKRD35Q8N283 1001 aa12.8□□□□□ -0.36
CHD3-216ENST00000573936 BRF1Q92994 677 aa12.8□□□□□ -0.36
CHD3-216ENST00000573936 MTMR8Q96EF0 704 aa12.8□□□□□ -0.36
CHD3-216ENST00000573936 MYL10Q9BUA6 226 aa12.8□□□□□ -0.36
CHD3-216ENST00000573936 SPZ1Q9BXG8 430 aa12.8□□□□□ -0.36
CHD3-216ENST00000573936 CPVLQ9H3G5 476 aa12.8□□□□□ -0.36
CHD3-216ENST00000573936 RNF146Q9NTX7 359 aa12.8□□□□□ -0.36
CHD3-216ENST00000573936 PDRG1Q9NUG6 133 aa12.8□□□□□ -0.36
CHD3-216ENST00000573936 DIS3Q9Y2L1 958 aaKnown RBP12.8□□□□□ -0.36
CHD3-216ENST00000573936 DNAH12Q6ZR08 3092 aa12.8□□□□□ -0.36
CHD3-216ENST00000573936 GOLGA8AA7E2F4 631 aa12.79□□□□□ -0.36
CHD3-216ENST00000573936 GOLGA8BA8MQT2 603 aa12.79□□□□□ -0.36
CHD3-216ENST00000573936 ZBTB5O15062 677 aa12.79□□□□□ -0.36
CHD3-216ENST00000573936 APOBRQ0VD83 1088 aa12.79□□□□□ -0.36
CHD3-216ENST00000573936 ANKRD1Q15327 319 aa12.79□□□□□ -0.36
CHD3-216ENST00000573936 RTN1Q16799 776 aa12.79□□□□□ -0.36
CHD3-216ENST00000573936 QRICH1Q2TAL8 776 aa12.79□□□□□ -0.36
CHD3-216ENST00000573936 MICU3Q86XE3 530 aa12.79□□□□□ -0.36
CHD3-216ENST00000573936 DEFB118Q96PH6 123 aa12.79□□□□□ -0.36
CHD3-216ENST00000573936 AMNQ9BXJ7 453 aa12.79□□□□□ -0.36
CHD3-216ENST00000573936 ALDH8A1Q9H2A2 487 aaPredicted RBP12.79□□□□□ -0.36
CHD3-216ENST00000573936 HOMER2Q9NSB8 354 aa12.79□□□□□ -0.36
CHD3-216ENST00000573936 BRPF3Q9ULD4 1205 aa12.79□□□□□ -0.36
CHD3-216ENST00000573936 NAP1L2Q9ULW6 460 aaPredicted RBP12.79□□□□□ -0.36
CHD3-216ENST00000573936 MRPL11Q9Y3B7 192 aaKnown RBP12.79□□□□□ -0.36
CHD3-216ENST00000573936 PFASO15067 1338 aa12.79□□□□□ -0.36
CHD3-216ENST00000573936 ABCB11O95342 1321 aa12.79□□□□□ -0.36
CHD3-216ENST00000573936 PNMA6FA0A0J9YX94 578 aa12.78□□□□□ -0.36
CHD3-216ENST00000573936 COBLO75128 1261 aa12.78□□□□□ -0.36
CHD3-216ENST00000573936 HMGCRP04035 888 aa12.78□□□□□ -0.36
CHD3-216ENST00000573936 RXRAP19793 462 aa12.78□□□□□ -0.36
CHD3-216ENST00000573936 METAP2P50579 478 aaKnown RBP eCLIP12.78□□□□□ -0.36
CHD3-216ENST00000573936 EVCP57679 992 aa12.78□□□□□ -0.36
CHD3-216ENST00000573936 ZNF792Q3KQV3 632 aa12.78□□□□□ -0.36
CHD3-216ENST00000573936 MFSD14CQ5VZR4 134 aa12.78□□□□□ -0.36
CHD3-216ENST00000573936 OLFML2BQ68BL8 750 aa12.78□□□□□ -0.36
CHD3-216ENST00000573936 CCDC144CPQ8IYA2 1237 aa12.78□□□□□ -0.36
CHD3-216ENST00000573936 RGS22Q8NE09 1264 aa12.78□□□□□ -0.36
CHD3-216ENST00000573936 NPLOC4Q8TAT6 608 aa12.78□□□□□ -0.36
CHD3-216ENST00000573936 RRP36Q96EU6 259 aaKnown RBP12.78□□□□□ -0.36
CHD3-216ENST00000573936 C22orf23Q9BZE7 217 aa12.78□□□□□ -0.36
CHD3-216ENST00000573936 UPF3BQ9BZI7 483 aaKnown RBP12.78□□□□□ -0.36
CHD3-216ENST00000573936 SEC63Q9UGP8 760 aaKnown RBP12.78□□□□□ -0.36
CHD3-216ENST00000573936 COL6A3P12111 3177 aa12.78□□□□□ -0.36
CHD3-216ENST00000573936 COL11A1P12107 1806 aaPredicted RBP12.78□□□□□ -0.36
CHD3-216ENST00000573936 LAMA2P24043 3122 aaKnown RBP12.77□□□□□ -0.37
CHD3-216ENST00000573936 DNAJC25-GNG10A0A024R161 153 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 POTEB2H3BUK9 544 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 CYTH3O43739 400 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 USH1GQ495M9 461 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 MUM1L1Q5H9M0 696 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 TMTC3Q6ZXV5 915 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 NECAB2Q7Z6G3 386 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 HOMER1Q86YM7 354 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 MCF2L2Q86YR7 1114 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 RAB11FIP4Q86YS3 637 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 SRBD1Q8N5C6 995 aaKnown RBP12.77□□□□□ -0.37
CHD3-216ENST00000573936 MSL3Q8N5Y2 521 aaKnown RBP12.77□□□□□ -0.37
CHD3-216ENST00000573936 SAMD3Q8N6K7 520 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 IL27Q8NEV9 243 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 TRIB2Q92519 343 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 ZNF274Q96GC6 653 aaPredicted RBP12.77□□□□□ -0.37
CHD3-216ENST00000573936 PIGSQ96S52 555 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 A1CFQ9NQ94 594 aaKnown RBP12.77□□□□□ -0.37
CHD3-216ENST00000573936 PAK6Q9NQU5 681 aaPredicted RBP12.77□□□□□ -0.37
CHD3-216ENST00000573936 CUL9Q8IWT3 2517 aa12.77□□□□□ -0.37
CHD3-216ENST00000573936 PLXNB2O15031 1838 aa12.76□□□□□ -0.37
CHD3-216ENST00000573936 ZNF236Q9UL36 1845 aa12.76□□□□□ -0.37
CHD3-216ENST00000573936 ALPK3Q96L96 1907 aa12.76□□□□□ -0.37
CHD3-216ENST00000573936 A0A0C4DFX4 3053 aa12.76□□□□□ -0.37
CHD3-216ENST00000573936 PLEKHA8P1O95397 391 aa12.76□□□□□ -0.37
CHD3-216ENST00000573936 PGK2P07205 417 aa12.76□□□□□ -0.37
CHD3-216ENST00000573936 RBM25P49756 843 aaKnown RBP12.76□□□□□ -0.37
CHD3-216ENST00000573936 TOB2Q14106 344 aaPredicted RBP12.76□□□□□ -0.37
CHD3-216ENST00000573936 NSMFQ6X4W1 530 aa12.76□□□□□ -0.37
CHD3-216ENST00000573936 ZNF467Q7Z7K2 595 aaPredicted RBP12.76□□□□□ -0.37
CHD3-216ENST00000573936 PAWRQ96IZ0 340 aaKnown RBP12.76□□□□□ -0.37
CHD3-216ENST00000573936 MAML3Q96JK9 1138 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms