RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 MYCNP04198 464 aaPredicted RBP23.72■■□□□ 1.39
CLK3-225ENST00000569063 BAATQ14032 418 aaPredicted RBP23.72■■□□□ 1.39
CLK3-225ENST00000569063 CCDC144BQ3MJ40 725 aa23.72■■□□□ 1.39
CLK3-225ENST00000569063 STOX1Q6ZVD7 989 aa23.72■■□□□ 1.39
CLK3-225ENST00000569063 ADGRF4Q8IZF3 695 aa23.72■■□□□ 1.39
CLK3-225ENST00000569063 CCDC136Q96JN2 1154 aa23.72■■□□□ 1.39
CLK3-225ENST00000569063 RBM27Q9P2N5 1060 aaKnown RBP23.72■■□□□ 1.39
CLK3-225ENST00000569063 ADAMTS4O75173 837 aa23.71■■□□□ 1.39
CLK3-225ENST00000569063 ADCYAP1R1P41586 468 aa23.71■■□□□ 1.39
CLK3-225ENST00000569063 SLC39A5Q6ZMH5 540 aa23.71■■□□□ 1.39
CLK3-225ENST00000569063 LENG1Q96BZ8 264 aaPredicted RBP23.71■■□□□ 1.39
CLK3-225ENST00000569063 PHF24Q9UPV7 400 aa23.71■■□□□ 1.39
CLK3-225ENST00000569063 DNAH12Q6ZR08 3092 aa23.7■■□□□ 1.39
CLK3-225ENST00000569063 IFIT3O14879 490 aaKnown RBP23.7■■□□□ 1.38
CLK3-225ENST00000569063 SLC34A2O95436 690 aa23.7■■□□□ 1.38
CLK3-225ENST00000569063 ATN1P54259 1190 aaPredicted RBP23.7■■□□□ 1.38
CLK3-225ENST00000569063 CDC37Q16543 378 aaPredicted RBP23.7■■□□□ 1.38
CLK3-225ENST00000569063 MORC4Q8TE76 937 aa23.7■■□□□ 1.38
CLK3-225ENST00000569063 TSEN34Q9BSV6 310 aaKnown RBP23.7■■□□□ 1.38
CLK3-225ENST00000569063 ZMYND8Q9ULU4 1186 aaPredicted RBP23.7■■□□□ 1.38
CLK3-225ENST00000569063 SYNRGQ9UMZ2 1314 aa23.69■■□□□ 1.38
CLK3-225ENST00000569063 LOC102724159A0A0B4J2E5 919 aa23.69■■□□□ 1.38
CLK3-225ENST00000569063 ERICH2A1L162 156 aa23.69■■□□□ 1.38
CLK3-225ENST00000569063 SART3Q15020 963 aaKnown RBP23.69■■□□□ 1.38
CLK3-225ENST00000569063 SNX17Q15036 470 aa23.69■■□□□ 1.38
CLK3-225ENST00000569063 PWP2Q15269 919 aaKnown RBP23.69■■□□□ 1.38
CLK3-225ENST00000569063 C1orf53Q5VUE5 145 aa23.69■■□□□ 1.38
CLK3-225ENST00000569063 RGS22Q8NE09 1264 aa23.69■■□□□ 1.38
CLK3-225ENST00000569063 KLHDC9Q8NEP7 349 aa23.69■■□□□ 1.38
CLK3-225ENST00000569063 PURBQ96QR8 312 aaKnown RBP23.69■■□□□ 1.38
CLK3-225ENST00000569063 MAF1Q9H063 256 aa23.69■■□□□ 1.38
CLK3-225ENST00000569063 ADD3Q9UEY8 706 aaKnown RBP23.69■■□□□ 1.38
CLK3-225ENST00000569063 PTPDC1A2A3K4 754 aa23.68■■□□□ 1.38
CLK3-225ENST00000569063 ADCY6O43306 1168 aa23.68■■□□□ 1.38
CLK3-225ENST00000569063 SYN1P17600 705 aa23.68■■□□□ 1.38
CLK3-225ENST00000569063 RNF207Q6ZRF8 634 aa23.68■■□□□ 1.38
CLK3-225ENST00000569063 MB21D2Q8IYB1 491 aaPredicted RBP23.68■■□□□ 1.38
CLK3-225ENST00000569063 STAG2Q8N3U4 1231 aa23.68■■□□□ 1.38
CLK3-225ENST00000569063 GDF15Q99988 308 aa23.68■■□□□ 1.38
CLK3-225ENST00000569063 JMJD4Q9H9V9 463 aa23.68■■□□□ 1.38
CLK3-225ENST00000569063 MAD2L2Q9UI95 211 aa23.68■■□□□ 1.38
CLK3-225ENST00000569063 MCM3APO60318 1980 aa23.68■■□□□ 1.38
CLK3-225ENST00000569063 PALM3A6NDB9 673 aaPredicted RBP23.67■■□□□ 1.38
CLK3-225ENST00000569063 ALDH5A1P51649 535 aaPredicted RBP23.67■■□□□ 1.38
CLK3-225ENST00000569063 ANTXR2P58335 489 aa23.67■■□□□ 1.38
CLK3-225ENST00000569063 RTP1P59025 263 aa23.67■■□□□ 1.38
CLK3-225ENST00000569063 WTAPQ15007 396 aa23.67■■□□□ 1.38
CLK3-225ENST00000569063 NECTIN1Q15223 517 aa23.67■■□□□ 1.38
CLK3-225ENST00000569063 USH1GQ495M9 461 aa23.67■■□□□ 1.38
CLK3-225ENST00000569063 CCSAPQ6IQ19 270 aaPredicted RBP23.67■■□□□ 1.38
CLK3-225ENST00000569063 SLC30A10Q6XR72 485 aa23.67■■□□□ 1.38
CLK3-225ENST00000569063 CHST3Q7LGC8 479 aa23.67■■□□□ 1.38
CLK3-225ENST00000569063 IGDCC4Q8TDY8 1250 aa23.67■■□□□ 1.38
CLK3-225ENST00000569063 FERMT2Q96AC1 680 aa23.67■■□□□ 1.38
CLK3-225ENST00000569063 UPF3AQ9H1J1 476 aaKnown RBP23.67■■□□□ 1.38
CLK3-225ENST00000569063 SENP2Q9HC62 589 aa23.67■■□□□ 1.38
CLK3-225ENST00000569063 ANO2Q9NQ90 1003 aa23.67■■□□□ 1.38
CLK3-225ENST00000569063 CEP290O15078 2479 aa23.67■■□□□ 1.38
CLK3-225ENST00000569063 LCTP09848 1927 aa23.67■■□□□ 1.38
CLK3-225ENST00000569063 ABCB11O95342 1321 aa23.66■■□□□ 1.38
CLK3-225ENST00000569063 KLRF2D3W0D1 207 aa23.66■■□□□ 1.38
CLK3-225ENST00000569063 SLC27A2O14975 620 aa23.66■■□□□ 1.38
CLK3-225ENST00000569063 CALML3P27482 149 aa23.66■■□□□ 1.38
CLK3-225ENST00000569063 CST5P28325 142 aaPredicted RBP23.66■■□□□ 1.38
CLK3-225ENST00000569063 BMP8BP34820 402 aa23.66■■□□□ 1.38
CLK3-225ENST00000569063 GJA9P57773 515 aa23.66■■□□□ 1.38
CLK3-225ENST00000569063 RPS6P62753 249 aaKnown RBP23.66■■□□□ 1.38
CLK3-225ENST00000569063 NKX3-2P78367 333 aa23.66■■□□□ 1.38
CLK3-225ENST00000569063 QRICH1Q2TAL8 776 aa23.66■■□□□ 1.38
CLK3-225ENST00000569063 TMEM67Q5HYA8 995 aa23.66■■□□□ 1.38
CLK3-225ENST00000569063 MTA3Q9BTC8 594 aa23.66■■□□□ 1.38
CLK3-225ENST00000569063 VAT1LQ9HCJ6 419 aa23.66■■□□□ 1.38
CLK3-225ENST00000569063 DDX49Q9Y6V7 483 aaKnown RBP23.66■■□□□ 1.38
CLK3-225ENST00000569063 A0A1W2PPC1 479 aa23.65■■□□□ 1.38
CLK3-225ENST00000569063 A0A1W2PQ45 241 aaPredicted RBP23.65■■□□□ 1.38
CLK3-225ENST00000569063 A0A1W2PQY0 241 aa23.65■■□□□ 1.38
CLK3-225ENST00000569063 MOXD2PA6NHM9 499 aa23.65■■□□□ 1.38
CLK3-225ENST00000569063 DHX16O60231 1041 aaKnown RBP23.65■■□□□ 1.38
CLK3-225ENST00000569063 ACLYP53396 1101 aa23.65■■□□□ 1.38
CLK3-225ENST00000569063 TNFAIP2Q03169 654 aa23.65■■□□□ 1.38
CLK3-225ENST00000569063 TROAPQ12815 778 aa23.65■■□□□ 1.38
CLK3-225ENST00000569063 GRM4Q14833 912 aa23.65■■□□□ 1.38
CLK3-225ENST00000569063 TAPT1Q6NXT6 567 aa23.65■■□□□ 1.38
CLK3-225ENST00000569063 DNERQ8NFT8 737 aa23.65■■□□□ 1.38
CLK3-225ENST00000569063 MTMR8Q96EF0 704 aa23.65■■□□□ 1.38
CLK3-225ENST00000569063 SPC25Q9HBM1 224 aa23.65■■□□□ 1.38
CLK3-225ENST00000569063 VTA1Q9NP79 307 aa23.65■■□□□ 1.38
CLK3-225ENST00000569063 GNEQ9Y223 722 aaKnown RBP23.65■■□□□ 1.38
CLK3-225ENST00000569063 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.64■■□□□ 1.37
CLK3-225ENST00000569063 MAGEA10P43363 369 aaPredicted RBP23.64■■□□□ 1.37
CLK3-225ENST00000569063 FXR1P51114 621 aaKnown RBP eCLIP23.64■■□□□ 1.37
CLK3-225ENST00000569063 KCNA10Q16322 511 aa23.64■■□□□ 1.37
CLK3-225ENST00000569063 CREB3L3Q68CJ9 461 aa23.64■■□□□ 1.37
CLK3-225ENST00000569063 IQSEC1Q6DN90 963 aa23.64■■□□□ 1.37
CLK3-225ENST00000569063 CASC1Q6TDU7 716 aa23.64■■□□□ 1.37
CLK3-225ENST00000569063 FBXO11Q86XK2 927 aa23.64■■□□□ 1.37
CLK3-225ENST00000569063 NUP133Q8WUM0 1156 aa23.64■■□□□ 1.37
CLK3-225ENST00000569063 ATP11BQ9Y2G3 1177 aa23.64■■□□□ 1.37
CLK3-225ENST00000569063 MYADML2A6NDP7 307 aa23.63■■□□□ 1.37
CLK3-225ENST00000569063 LRRC37A2A6NM11 1700 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms