RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 COL14A1Q05707 1796 aaKnown RBP3.7□□□□□ -1.82
VPS35-209ENST00000568642 NCOR1O75376 2440 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 FMN2Q9NZ56 1722 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 PAPPAQ13219 1627 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 LMTK2Q8IWU2 1503 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 SPATA31A5Q5VU36 1347 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 SPATA31A7Q8IWB4 1347 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 DNAJC25-GNG10A0A024R161 153 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 A0A087WZG4 1122 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 FAM221AA4D161 298 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 A6NCN8 305 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 A6NNZ2 444 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 MEN1O00255 615 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 NEFMP07197 916 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 SLC5A1P13866 664 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 ZSCAN20P17040 1043 aaPredicted RBP3.69□□□□□ -1.82
VPS35-209ENST00000568642 TFE3P19532 575 aaPredicted RBP3.69□□□□□ -1.82
VPS35-209ENST00000568642 GBP2P32456 591 aaPredicted RBP3.69□□□□□ -1.82
VPS35-209ENST00000568642 GPC1P35052 558 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 SOX5P35711 763 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 ALDH5A1P51649 535 aaPredicted RBP3.69□□□□□ -1.82
VPS35-209ENST00000568642 TERF1P54274 439 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 GEMIN4P57678 1058 aaKnown RBP3.69□□□□□ -1.82
VPS35-209ENST00000568642 TCIRG1Q13488 830 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 PCBP1Q15365 356 aaKnown RBP eCLIP3.69□□□□□ -1.82
VPS35-209ENST00000568642 SEPT7Q16181 437 aaKnown RBP3.69□□□□□ -1.82
VPS35-209ENST00000568642 GFOD2Q3B7J2 385 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 NBPF20Q3BBV1 942 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 C11orf91Q3C1V1 193 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 CCDC70Q6NSX1 233 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 CFAP161Q6P656 301 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 ANKRD23Q86SG2 305 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 ZBTB33Q86T24 672 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 SKAP1Q86WV1 359 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 LSRQ86X29 649 aaPredicted RBP3.69□□□□□ -1.82
VPS35-209ENST00000568642 KIAA1958Q8N8K9 716 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 CCDC89Q8N998 374 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 ZBTB38Q8NAP3 1195 aaPredicted RBP3.69□□□□□ -1.82
VPS35-209ENST00000568642 ATL2Q8NHH9 583 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 TSPAN18Q96SJ8 248 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 HERPUD2Q9BSE4 406 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 CENPOQ9BU64 300 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 NAA15Q9BXJ9 866 aaKnown RBP3.69□□□□□ -1.82
VPS35-209ENST00000568642 OSBPL5Q9H0X9 879 aaPredicted RBP3.69□□□□□ -1.82
VPS35-209ENST00000568642 NCOA5Q9HCD5 579 aaKnown RBP3.69□□□□□ -1.82
VPS35-209ENST00000568642 NPHS2Q9NP85 383 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 TIMMDC1Q9NPL8 285 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 SLC5A4Q9NY91 659 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 CABP1Q9NZU7 370 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 ANKIB1Q9P2G1 1089 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 SERTAD1Q9UHV2 236 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 ZNF180Q9UJW8 692 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 PHTF1Q9UMS5 762 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 DIS3Q9Y2L1 958 aaKnown RBP3.69□□□□□ -1.82
VPS35-209ENST00000568642 PTPN22Q9Y2R2 807 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 XRN1Q8IZH2 1706 aaKnown RBP3.69□□□□□ -1.82
VPS35-209ENST00000568642 ZDBF2Q9HCK1 2354 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 THSD7BQ9C0I4 1608 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 NPHP3Q7Z494 1330 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 SYNGAP1Q96PV0 1343 aa3.69□□□□□ -1.82
VPS35-209ENST00000568642 AKAP12Q02952 1782 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 PLEKHH2Q8IVE3 1493 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 PEAK1Q9H792 1746 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 TMEM265A0A087WTH1 108 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 ABHD14A-ACY1A0A1B0GW23 586 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 E2F8A0AVK6 867 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 DHX16O60231 1041 aaKnown RBP3.68□□□□□ -1.82
VPS35-209ENST00000568642 POLR3DP05423 398 aaPredicted RBP3.68□□□□□ -1.82
VPS35-209ENST00000568642 ARAFP10398 606 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 GLULP15104 373 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 POU3F2P20265 443 aaPredicted RBP3.68□□□□□ -1.82
VPS35-209ENST00000568642 LPOP22079 712 aaPredicted RBP3.68□□□□□ -1.82
VPS35-209ENST00000568642 SCP2P22307 547 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 FGFR3P22607 806 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 TSPAN7P41732 249 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 LMNB2Q03252 620 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 SSRP1Q08945 709 aaKnown RBP3.68□□□□□ -1.82
VPS35-209ENST00000568642 CAMK2GQ13555 558 aaPredicted RBP3.68□□□□□ -1.82
VPS35-209ENST00000568642 STAT4Q14765 748 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 TOMM20Q15388 145 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 TRIP4Q15650 581 aaPredicted RBP3.68□□□□□ -1.82
VPS35-209ENST00000568642 LONRF2Q1L5Z9 754 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 PPP4R3AQ6IN85 833 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 CXorf57Q6NSI4 855 aaKnown RBP3.68□□□□□ -1.82
VPS35-209ENST00000568642 XRRA1Q6P2D8 792 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 RUFY4Q6ZNE9 571 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 PNMA8AQ86V59 439 aaPredicted RBP3.68□□□□□ -1.82
VPS35-209ENST00000568642 NLRP8Q86W28 1048 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 FCHSD1Q86WN1 690 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 PPARGC1BQ86YN6 1023 aaKnown RBP3.68□□□□□ -1.82
VPS35-209ENST00000568642 RELL1Q8IUW5 271 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 PHF6Q8IWS0 365 aaKnown RBP eCLIP3.68□□□□□ -1.82
VPS35-209ENST00000568642 ANKRD42Q8N9B4 389 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 ZSWIM2Q8NEG5 633 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 COG1Q8WTW3 980 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 DDX1Q92499 740 aaKnown RBP3.68□□□□□ -1.82
VPS35-209ENST00000568642 SKA1Q96BD8 255 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 PGBD4Q96DM1 585 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 IFT43Q96FT9 208 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 ORAI2Q96SN7 254 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms