RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 CDC27P30260 824 aa11.5□□□□□ -0.57
CLN3-220ENST00000566040 GHRHRQ02643 423 aa11.5□□□□□ -0.57
CLN3-220ENST00000566040 RNF20Q5VTR2 975 aa11.5□□□□□ -0.57
CLN3-220ENST00000566040 LHX8Q68G74 356 aa11.5□□□□□ -0.57
CLN3-220ENST00000566040 CMTR1Q8N1G2 835 aaKnown RBP11.5□□□□□ -0.57
CLN3-220ENST00000566040 CHST13Q8NET6 341 aa11.5□□□□□ -0.57
CLN3-220ENST00000566040 TRERF1Q96PN7 1200 aa11.5□□□□□ -0.57
CLN3-220ENST00000566040 MAP3K14Q99558 947 aa11.5□□□□□ -0.57
CLN3-220ENST00000566040 CRISPLD2Q9H0B8 497 aa11.5□□□□□ -0.57
CLN3-220ENST00000566040 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.5□□□□□ -0.57
CLN3-220ENST00000566040 CYP39A1Q9NYL5 469 aa11.5□□□□□ -0.57
CLN3-220ENST00000566040 CCPG1Q9ULG6 757 aa11.5□□□□□ -0.57
CLN3-220ENST00000566040 MYH7BA7E2Y1 1941 aa11.5□□□□□ -0.57
CLN3-220ENST00000566040 CEP290O15078 2479 aa11.49□□□□□ -0.57
CLN3-220ENST00000566040 LTBP2Q14767 1821 aa11.49□□□□□ -0.57
CLN3-220ENST00000566040 ZNF865P0CJ78 1059 aaPredicted RBP11.49□□□□□ -0.57
CLN3-220ENST00000566040 COPB2P35606 906 aa11.49□□□□□ -0.57
CLN3-220ENST00000566040 EVCP57679 992 aa11.49□□□□□ -0.57
CLN3-220ENST00000566040 IKQ13123 557 aaPredicted RBP11.49□□□□□ -0.57
CLN3-220ENST00000566040 PRAMEF19Q5SWL8 479 aa11.49□□□□□ -0.57
CLN3-220ENST00000566040 MAMDC4Q6UXC1 1216 aa11.49□□□□□ -0.57
CLN3-220ENST00000566040 TMTC3Q6ZXV5 915 aa11.49□□□□□ -0.57
CLN3-220ENST00000566040 CCDC144CPQ8IYA2 1237 aa11.49□□□□□ -0.57
CLN3-220ENST00000566040 PIGSQ96S52 555 aa11.49□□□□□ -0.57
CLN3-220ENST00000566040 SPZ1Q9BXG8 430 aa11.49□□□□□ -0.57
CLN3-220ENST00000566040 ACAD9Q9H845 621 aa11.49□□□□□ -0.57
CLN3-220ENST00000566040 ISY1Q9ULR0 285 aaKnown RBP11.49□□□□□ -0.57
CLN3-220ENST00000566040 GJB1P08034 283 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 CASTP20810 708 aaKnown RBP11.48□□□□□ -0.57
CLN3-220ENST00000566040 PTGS1P23219 599 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 GJA8P48165 433 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 APOBRQ0VD83 1088 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 KRT32Q14532 448 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 TKFCQ3LXA3 575 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 TMEM63BQ5T3F8 832 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 TYW1BQ6NUM6 668 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 Q6ZUG5 572 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 MORC4Q8TE76 937 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 LENG1Q96BZ8 264 aaPredicted RBP11.48□□□□□ -0.57
CLN3-220ENST00000566040 UPF3BQ9BZI7 483 aaKnown RBP11.48□□□□□ -0.57
CLN3-220ENST00000566040 TM6SF1Q9BZW5 370 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 DIS3Q9Y2L1 958 aaKnown RBP11.48□□□□□ -0.57
CLN3-220ENST00000566040 GTF3C3Q9Y5Q9 886 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 IVNS1ABPQ9Y6Y0 642 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 RPTORQ8N122 1335 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 WDR81Q562E7 1941 aa11.48□□□□□ -0.57
CLN3-220ENST00000566040 KLF18A0A0U1RQI7 1052 aa11.47□□□□□ -0.57
CLN3-220ENST00000566040 ZBTB5O15062 677 aa11.47□□□□□ -0.57
CLN3-220ENST00000566040 ADAMTS3O15072 1205 aa11.47□□□□□ -0.57
CLN3-220ENST00000566040 SLC4A3P48751 1232 aa11.47□□□□□ -0.57
CLN3-220ENST00000566040 IRX5P78411 483 aaPredicted RBP11.47□□□□□ -0.57
CLN3-220ENST00000566040 BAATQ14032 418 aaPredicted RBP11.47□□□□□ -0.57
CLN3-220ENST00000566040 KCTD2Q14681 263 aa11.47□□□□□ -0.57
CLN3-220ENST00000566040 SART3Q15020 963 aaKnown RBP11.47□□□□□ -0.57
CLN3-220ENST00000566040 NTRK3Q16288 839 aa11.47□□□□□ -0.57
CLN3-220ENST00000566040 USH1GQ495M9 461 aa11.47□□□□□ -0.57
CLN3-220ENST00000566040 RUFY3Q7L099 469 aa11.47□□□□□ -0.57
CLN3-220ENST00000566040 CATIPQ7Z7H3 387 aa11.47□□□□□ -0.57
CLN3-220ENST00000566040 ZNF467Q7Z7K2 595 aaPredicted RBP11.47□□□□□ -0.57
CLN3-220ENST00000566040 MICU3Q86XE3 530 aa11.47□□□□□ -0.57
CLN3-220ENST00000566040 DIS3LQ8TF46 1054 aaKnown RBP11.47□□□□□ -0.57
CLN3-220ENST00000566040 U2AF1L4Q8WU68 220 aaKnown RBP11.47□□□□□ -0.57
CLN3-220ENST00000566040 BRF1Q92994 677 aa11.47□□□□□ -0.57
CLN3-220ENST00000566040 DEFB118Q96PH6 123 aa11.47□□□□□ -0.57
CLN3-220ENST00000566040 TINF2Q9BSI4 451 aa11.47□□□□□ -0.57
CLN3-220ENST00000566040 VAT1LQ9HCJ6 419 aa11.47□□□□□ -0.57
CLN3-220ENST00000566040 SYNGAP1Q96PV0 1343 aa11.46□□□□□ -0.57
CLN3-220ENST00000566040 hCG_1642624A0A1W2PR95 340 aa11.46□□□□□ -0.57
CLN3-220ENST00000566040 CTAGE5O15320 804 aa11.46□□□□□ -0.57
CLN3-220ENST00000566040 SGPL1O95470 568 aa11.46□□□□□ -0.57
CLN3-220ENST00000566040 EDNRBP24530 442 aa11.46□□□□□ -0.57
CLN3-220ENST00000566040 HSD17B4P51659 736 aa11.46□□□□□ -0.57
CLN3-220ENST00000566040 RPS6P62753 249 aaKnown RBP11.46□□□□□ -0.57
CLN3-220ENST00000566040 ST3GAL1Q11201 340 aa11.46□□□□□ -0.57
CLN3-220ENST00000566040 BLOC1S2Q6QNY1 142 aa11.46□□□□□ -0.57
CLN3-220ENST00000566040 DPP9Q86TI2 863 aa11.46□□□□□ -0.57
CLN3-220ENST00000566040 TRMT44Q8IYL2 757 aaKnown RBP11.46□□□□□ -0.57
CLN3-220ENST00000566040 FANCBQ8NB91 859 aa11.46□□□□□ -0.57
CLN3-220ENST00000566040 NUP133Q8WUM0 1156 aa11.46□□□□□ -0.57
CLN3-220ENST00000566040 LARP6Q9BRS8 491 aaKnown RBP11.46□□□□□ -0.57
CLN3-220ENST00000566040 RNF208Q9H0X6 261 aa11.46□□□□□ -0.57
CLN3-220ENST00000566040 FBXO40Q9UH90 709 aa11.46□□□□□ -0.57
CLN3-220ENST00000566040 OGDHLQ9ULD0 1010 aa11.46□□□□□ -0.57
CLN3-220ENST00000566040 RANBP2P49792 3224 aaKnown RBP11.46□□□□□ -0.58
CLN3-220ENST00000566040 PFASO15067 1338 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 ABCB11O95342 1321 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 FRMPD4Q14CM0 1322 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 ERICH2A1L162 156 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 CCDC69A6NI79 296 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 DTNBO60941 627 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 LARGE1O95461 756 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 SMARCA1P28370 1054 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 ADD1P35611 737 aaKnown RBP11.45□□□□□ -0.58
CLN3-220ENST00000566040 RCAN1P53805 252 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 UBXN2AP68543 259 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 NSMFQ6X4W1 530 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 ARMCX2Q7L311 632 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 FBXO11Q86XK2 927 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 HOMER1Q86YM7 354 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 CCAR1Q8IX12 1150 aaKnown RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms