RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 CA12O43570 354 aa7.3□□□□□ -1.24
VPS35-204ENST00000563884 PRPF40AO75400 957 aaKnown RBP7.3□□□□□ -1.24
VPS35-204ENST00000563884 DALRD3Q5D0E6 543 aaKnown RBP7.3□□□□□ -1.24
VPS35-204ENST00000563884 ARHGEF25Q86VW2 580 aa7.3□□□□□ -1.24
VPS35-204ENST00000563884 C12orf40Q86WS4 652 aa7.3□□□□□ -1.24
VPS35-204ENST00000563884 NPAS4Q8IUM7 802 aa7.3□□□□□ -1.24
VPS35-204ENST00000563884 MCOLN1Q9GZU1 580 aa7.3□□□□□ -1.24
VPS35-204ENST00000563884 C12orf49Q9H741 205 aa7.3□□□□□ -1.24
VPS35-204ENST00000563884 CACNA2D2Q9NY47 1150 aa7.3□□□□□ -1.24
VPS35-204ENST00000563884 SPG7Q9UQ90 795 aa7.3□□□□□ -1.24
VPS35-204ENST00000563884 ENC1O14682 589 aa7.29□□□□□ -1.24
VPS35-204ENST00000563884 FBXO24O75426 580 aa7.29□□□□□ -1.24
VPS35-204ENST00000563884 PAGE1O75459 146 aa7.29□□□□□ -1.24
VPS35-204ENST00000563884 FARP2O94887 1054 aaPredicted RBP7.29□□□□□ -1.24
VPS35-204ENST00000563884 MMP10P09238 476 aa7.29□□□□□ -1.24
VPS35-204ENST00000563884 LMNB1P20700 586 aa7.29□□□□□ -1.24
VPS35-204ENST00000563884 BMP6P22004 513 aa7.29□□□□□ -1.24
VPS35-204ENST00000563884 FGD1P98174 961 aa7.29□□□□□ -1.24
VPS35-204ENST00000563884 IKZF1Q13422 519 aa7.29□□□□□ -1.24
VPS35-204ENST00000563884 LLGL2Q6P1M3 1020 aa7.29□□□□□ -1.24
VPS35-204ENST00000563884 SLC23A3Q6PIS1 610 aa7.29□□□□□ -1.24
VPS35-204ENST00000563884 ASB11Q8WXH4 323 aa7.29□□□□□ -1.24
VPS35-204ENST00000563884 TNKS2Q9H2K2 1166 aa7.29□□□□□ -1.24
VPS35-204ENST00000563884 PRDM7Q9NQW5 492 aa7.29□□□□□ -1.24
VPS35-204ENST00000563884 PCDHA4Q9UN74 947 aa7.29□□□□□ -1.24
VPS35-204ENST00000563884 RASSF10A6NK89 507 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 GNAT3A8MTJ3 354 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 FANCGO15287 622 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 DPEP1P16444 411 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 GNA15P30679 374 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 ECE1P42892 770 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 LRRC14Q15048 493 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 ZNF124Q15973 351 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 DEFB115Q30KQ5 88 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 FAM214BQ7L5A3 538 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 UBE3DQ7Z6J8 389 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 TMEM40Q8WWA1 233 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 ELMO3Q96BJ8 720 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 CDK19Q9BWU1 502 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 FAM8A1Q9UBU6 413 aa7.28□□□□□ -1.24
VPS35-204ENST00000563884 MAP2P11137 1827 aaKnown RBP7.28□□□□□ -1.24
VPS35-204ENST00000563884 PASKQ96RG2 1323 aa7.27□□□□□ -1.24
VPS35-204ENST00000563884 WDR33Q9C0J8 1336 aaKnown RBP7.27□□□□□ -1.24
VPS35-204ENST00000563884 IGF2BP3O00425 579 aaKnown RBP eCLIP7.27□□□□□ -1.25
VPS35-204ENST00000563884 NTF4P34130 210 aa7.27□□□□□ -1.25
VPS35-204ENST00000563884 ITGAEP38570 1179 aa7.27□□□□□ -1.25
VPS35-204ENST00000563884 ZP2Q05996 745 aa7.27□□□□□ -1.25
VPS35-204ENST00000563884 PKN1Q16512 942 aa7.27□□□□□ -1.25
VPS35-204ENST00000563884 EAPPQ56P03 285 aaPredicted RBP7.27□□□□□ -1.25
VPS35-204ENST00000563884 ZBTB37Q5TC79 503 aa7.27□□□□□ -1.25
VPS35-204ENST00000563884 PALLDQ8WX93 1383 aa7.27□□□□□ -1.25
VPS35-204ENST00000563884 AKAP11Q9UKA4 1901 aa7.27□□□□□ -1.25
VPS35-204ENST00000563884 FER1L6Q2WGJ9 1857 aa7.26□□□□□ -1.25
VPS35-204ENST00000563884 ZNF831Q5JPB2 1677 aa7.26□□□□□ -1.25
VPS35-204ENST00000563884 IQCA1LA6NCM1 817 aa7.26□□□□□ -1.25
VPS35-204ENST00000563884 HABP4Q5JVS0 413 aaKnown RBP7.26□□□□□ -1.25
VPS35-204ENST00000563884 FBXO33Q7Z6M2 555 aa7.26□□□□□ -1.25
VPS35-204ENST00000563884 LDHDQ86WU2 507 aa7.26□□□□□ -1.25
VPS35-204ENST00000563884 KSR1Q8IVT5 923 aa7.26□□□□□ -1.25
VPS35-204ENST00000563884 SPACA3Q8IXA5 215 aa7.26□□□□□ -1.25
VPS35-204ENST00000563884 NLGN1Q8N2Q7 840 aa7.26□□□□□ -1.25
VPS35-204ENST00000563884 KCT2Q8NC54 265 aa7.26□□□□□ -1.25
VPS35-204ENST00000563884 SMARCC1Q92922 1105 aaPredicted RBP7.26□□□□□ -1.25
VPS35-204ENST00000563884 GZF1Q9H116 711 aaPredicted RBP7.26□□□□□ -1.25
VPS35-204ENST00000563884 AK5Q9Y6K8 562 aa7.26□□□□□ -1.25
VPS35-204ENST00000563884 MON2Q7Z3U7 1717 aa7.26□□□□□ -1.25
VPS35-204ENST00000563884 RGPD2P0DJD1 1756 aa7.25□□□□□ -1.25
VPS35-204ENST00000563884 ERCC3P19447 782 aa7.25□□□□□ -1.25
VPS35-204ENST00000563884 RING1Q06587 406 aa7.25□□□□□ -1.25
VPS35-204ENST00000563884 SCARA3Q6AZY7 606 aa7.25□□□□□ -1.25
VPS35-204ENST00000563884 ARMCX6Q7L4S7 300 aa7.25□□□□□ -1.25
VPS35-204ENST00000563884 ZNF507Q8TCN5 953 aa7.25□□□□□ -1.25
VPS35-204ENST00000563884 SLC38A3Q99624 504 aa7.25□□□□□ -1.25
VPS35-204ENST00000563884 DUSP9Q99956 384 aaKnown RBP7.25□□□□□ -1.25
VPS35-204ENST00000563884 PRDM5Q9NQX1 630 aaPredicted RBP7.25□□□□□ -1.25
VPS35-204ENST00000563884 ADAMTSL1Q8N6G6 1762 aa7.25□□□□□ -1.25
VPS35-204ENST00000563884 TTC21AQ8NDW8 1320 aa7.25□□□□□ -1.25
VPS35-204ENST00000563884 PRAMEF27A3QJZ7 478 aa7.24□□□□□ -1.25
VPS35-204ENST00000563884 EOMESO95936 686 aa7.24□□□□□ -1.25
VPS35-204ENST00000563884 USP17L7P0C7H9 530 aa7.24□□□□□ -1.25
VPS35-204ENST00000563884 SOX10P56693 466 aa7.24□□□□□ -1.25
VPS35-204ENST00000563884 NKPD1Q17RQ9 610 aa7.24□□□□□ -1.25
VPS35-204ENST00000563884 RASIP1Q5U651 963 aa7.24□□□□□ -1.25
VPS35-204ENST00000563884 ZSWIM9Q86XI8 627 aa7.24□□□□□ -1.25
VPS35-204ENST00000563884 FOXQ1Q9C009 403 aa7.24□□□□□ -1.25
VPS35-204ENST00000563884 RNF19AQ9NV58 838 aa7.24□□□□□ -1.25
VPS35-204ENST00000563884 ABT1Q9ULW3 272 aaKnown RBP7.24□□□□□ -1.25
VPS35-204ENST00000563884 CYP8B1Q9UNU6 501 aa7.24□□□□□ -1.25
VPS35-204ENST00000563884 SMG6Q86US8 1419 aaKnown RBP7.24□□□□□ -1.25
VPS35-204ENST00000563884 PITPNM2Q9BZ72 1349 aa7.24□□□□□ -1.25
VPS35-204ENST00000563884 COL5A3P25940 1745 aaPredicted RBP7.24□□□□□ -1.25
VPS35-204ENST00000563884 CACNA1SQ13698 1873 aa7.24□□□□□ -1.25
VPS35-204ENST00000563884 LRIG2O94898 1065 aa7.23□□□□□ -1.25
VPS35-204ENST00000563884 CELA3AP09093 270 aa7.23□□□□□ -1.25
VPS35-204ENST00000563884 CLCN7P51798 805 aa7.23□□□□□ -1.25
VPS35-204ENST00000563884 TMF1P82094 1093 aa7.23□□□□□ -1.25
VPS35-204ENST00000563884 KCNMB1Q16558 191 aa7.23□□□□□ -1.25
VPS35-204ENST00000563884 PCNX4Q63HM2 1172 aa7.23□□□□□ -1.25
VPS35-204ENST00000563884 AFDNP55196 1824 aaKnown RBP7.22□□□□□ -1.25
VPS35-204ENST00000563884 LRRC10BA6NIK2 292 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms