RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 FGRP09769 529 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 UBA7P41226 1012 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 HERVK_113P62684 666 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 UBE4AQ14139 1066 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 WDR59Q6PJI9 974 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 DTHD1Q6ZMT9 781 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 HEATR3Q7Z4Q2 680 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 PCMTD1Q96MG8 357 aaPredicted RBP12.65□□□□□ -0.38
CUX1-218ENST00000560541 MMS19Q96T76 1030 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 CRNKL1Q9BZJ0 848 aaKnown RBP12.65□□□□□ -0.38
CUX1-218ENST00000560541 KAT14Q9H8E8 782 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 NKRFO15226 690 aaKnown RBP eCLIP12.65□□□□□ -0.387e-6■■□□□ 12.8
CUX1-218ENST00000560541 LONP1P36776 959 aaKnown RBP12.65□□□□□ -0.38
CUX1-218ENST00000560541 TRAPPC10P48553 1259 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 LIG3P49916 1009 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 TFAP4Q01664 338 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 TRIM14Q14142 442 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 KIAA1328Q86T90 577 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 SLC51AQ86UW1 340 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 GSPT2Q8IYD1 628 aaKnown RBP12.65□□□□□ -0.38
CUX1-218ENST00000560541 CEP89Q96ST8 783 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 DUSP10Q9Y6W6 482 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 DISP2A7MBM2 1401 aa12.65□□□□□ -0.38
CUX1-218ENST00000560541 USP17L3A6NCW0 530 aa12.65□□□□□ -0.39
CUX1-218ENST00000560541 USP17L4A6NCW7 530 aa12.65□□□□□ -0.39
CUX1-218ENST00000560541 LGALS16A8MUM7 142 aa12.65□□□□□ -0.39
CUX1-218ENST00000560541 H7C1D1 291 aa12.65□□□□□ -0.39
CUX1-218ENST00000560541 EIF3JO75822 258 aaKnown RBP12.65□□□□□ -0.39
CUX1-218ENST00000560541 CLSTN1O94985 981 aa12.65□□□□□ -0.39
CUX1-218ENST00000560541 TRIM21P19474 475 aaKnown RBP12.65□□□□□ -0.39
CUX1-218ENST00000560541 CYP27A1Q02318 531 aa12.65□□□□□ -0.39
CUX1-218ENST00000560541 TSR1Q2NL82 804 aaKnown RBP12.65□□□□□ -0.39
CUX1-218ENST00000560541 NBPF9Q3BBW0 867 aa12.65□□□□□ -0.39
CUX1-218ENST00000560541 ARMC3Q5W041 872 aa12.65□□□□□ -0.39
CUX1-218ENST00000560541 USP17L1Q7RTZ2 530 aa12.65□□□□□ -0.39
CUX1-218ENST00000560541 JPH2Q9BR39 696 aaPredicted RBP12.65□□□□□ -0.39
CUX1-218ENST00000560541 RCCD1A6NED2 376 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 ZNF185O15231 689 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 ORC4O43929 436 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 CAND2O75155 1236 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 GOLGA8HP0CJ92 632 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 ERCC3P19447 782 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 CALRP27797 417 aaKnown RBP12.64□□□□□ -0.39
CUX1-218ENST00000560541 CORO7P57737 925 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 CCDC178Q5BJE1 867 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 PNMA1Q8ND90 353 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 HPS3Q969F9 1004 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 LACRTQ9GZZ8 138 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 MACROD2A1Z1Q3 448 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 IVLP07476 585 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 KIF5BP33176 963 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 TUBB2AQ13885 445 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 HSP90B2PQ58FF3 399 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 FBXW10Q5XX13 1052 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 CSGALNACT2Q8N6G5 542 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 SLC44A5Q8NCS7 719 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 CCDC148Q8NFR7 591 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 TUBB2BQ9BVA1 445 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 IL17RBQ9NRM6 502 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 BSDC1Q9NW68 430 aaPredicted RBP12.64□□□□□ -0.39
CUX1-218ENST00000560541 MYO1AQ9UBC5 1043 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 MAGEC2Q9UBF1 373 aaPredicted RBP12.64□□□□□ -0.39
CUX1-218ENST00000560541 PCDHA4Q9UN74 947 aa12.64□□□□□ -0.39
CUX1-218ENST00000560541 INHBEP58166 350 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 ARL6IP4Q66PJ3 421 aaKnown RBP12.63□□□□□ -0.39
CUX1-218ENST00000560541 TRAPPC11Q7Z392 1133 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 TXNRD3Q86VQ6 643 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 PYM1Q9BRP8 204 aaKnown RBP12.63□□□□□ -0.39
CUX1-218ENST00000560541 MYH14Q7Z406 1995 aaKnown RBP12.63□□□□□ -0.39
CUX1-218ENST00000560541 PSMA7O14818 248 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 KLRC4O43908 158 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 CALML3P27482 149 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 SLC35G1Q2M3R5 365 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 ZNF507Q8TCN5 953 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 RIN2Q8WYP3 895 aaPredicted RBP12.63□□□□□ -0.39
CUX1-218ENST00000560541 STX8Q9UNK0 236 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 SAR1BQ9Y6B6 198 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 FRMD3A2A2Y4 597 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 ADAMTS2O95450 1211 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 MRPS25P82663 173 aaKnown RBP12.63□□□□□ -0.39
CUX1-218ENST00000560541 DDB1Q16531 1140 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 CAGE1Q8TC20 777 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 KAT2BQ92831 832 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 DNAJC7Q99615 494 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 TUBGCP2Q9BSJ2 902 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 PCDHA6Q9UN73 950 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 PCDHA8Q9Y5H6 950 aa12.63□□□□□ -0.39
CUX1-218ENST00000560541 KCNQ2O43526 872 aa12.62□□□□□ -0.39
CUX1-218ENST00000560541 PCP11498 1178 aaKnown RBP12.62□□□□□ -0.39
CUX1-218ENST00000560541 FCER1AP12319 257 aa12.62□□□□□ -0.39
CUX1-218ENST00000560541 STIM1Q13586 685 aa12.62□□□□□ -0.39
CUX1-218ENST00000560541 JAKMIP2Q96AA8 810 aa12.62□□□□□ -0.39
CUX1-218ENST00000560541 HAUS4Q9H6D7 363 aa12.62□□□□□ -0.39
CUX1-218ENST00000560541 CAPN11Q9UMQ6 739 aa12.62□□□□□ -0.39
CUX1-218ENST00000560541 PDS5AQ29RF7 1337 aaKnown RBP12.62□□□□□ -0.39
CUX1-218ENST00000560541 CYTH3O43739 400 aa12.62□□□□□ -0.39
CUX1-218ENST00000560541 PLCG1P19174 1290 aa12.62□□□□□ -0.39
CUX1-218ENST00000560541 HIBADHP31937 336 aaKnown RBP12.62□□□□□ -0.39
CUX1-218ENST00000560541 ATP2B2Q01814 1243 aa12.62□□□□□ -0.39
CUX1-218ENST00000560541 TBC1D8BQ0IIM8 1120 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms