RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 TRIM60Q495X7 471 aa16.51■□□□□ 0.23
TPM1-223ENST00000560445 TTC22Q5TAA0 569 aa16.51■□□□□ 0.23
TPM1-223ENST00000560445 NOL8Q76FK4 1167 aaKnown RBP16.51■□□□□ 0.23
TPM1-223ENST00000560445 TBC1D10CQ8IV04 446 aa16.51■□□□□ 0.23
TPM1-223ENST00000560445 FERMT2Q96AC1 680 aa16.51■□□□□ 0.23
TPM1-223ENST00000560445 VTA1Q9NP79 307 aa16.51■□□□□ 0.23
TPM1-223ENST00000560445 CYP39A1Q9NYL5 469 aa16.51■□□□□ 0.23
TPM1-223ENST00000560445 CABYRO75952 493 aa16.5■□□□□ 0.23
TPM1-223ENST00000560445 CLTBP09497 229 aa16.5■□□□□ 0.23
TPM1-223ENST00000560445 SNHG28P0DPA3 235 aa16.5■□□□□ 0.23
TPM1-223ENST00000560445 MDM2Q00987 491 aaPredicted RBP16.5■□□□□ 0.23
TPM1-223ENST00000560445 ASPRV1Q53RT3 343 aa16.5■□□□□ 0.23
TPM1-223ENST00000560445 NSMFQ6X4W1 530 aa16.5■□□□□ 0.23
TPM1-223ENST00000560445 TOX2Q96NM4 488 aa16.5■□□□□ 0.23
TPM1-223ENST00000560445 AP5M1Q9H0R1 490 aa16.5■□□□□ 0.23
TPM1-223ENST00000560445 UPF3AQ9H1J1 476 aaKnown RBP16.5■□□□□ 0.23
TPM1-223ENST00000560445 GPCPD1Q9NPB8 672 aa16.5■□□□□ 0.23
TPM1-223ENST00000560445 FRMPD2Q68DX3 1309 aaPredicted RBP16.49■□□□□ 0.23
TPM1-223ENST00000560445 KDM4AO75164 1064 aa16.49■□□□□ 0.23
TPM1-223ENST00000560445 GJA9P57773 515 aa16.49■□□□□ 0.23
TPM1-223ENST00000560445 TNFAIP2Q03169 654 aa16.49■□□□□ 0.23
TPM1-223ENST00000560445 TRAF1Q13077 416 aa16.49■□□□□ 0.23
TPM1-223ENST00000560445 GNASQ5JWF2 1037 aa16.49■□□□□ 0.23
TPM1-223ENST00000560445 PNMA1Q8ND90 353 aa16.49■□□□□ 0.23
TPM1-223ENST00000560445 KLHDC9Q8NEP7 349 aa16.49■□□□□ 0.23
TPM1-223ENST00000560445 ZSCAN10Q96SZ4 725 aaPredicted RBP16.49■□□□□ 0.23
TPM1-223ENST00000560445 U3KPZ7 1027 aaPredicted RBP16.49■□□□□ 0.23
TPM1-223ENST00000560445 MCM3APO60318 1980 aa16.49■□□□□ 0.23
TPM1-223ENST00000560445 NEDD4P46934 1319 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 A0A0U1RQG5 324 aaPredicted RBP16.48■□□□□ 0.23
TPM1-223ENST00000560445 PTPDC1A2A3K4 754 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 TLR3O15455 904 aaKnown RBP16.48■□□□□ 0.23
TPM1-223ENST00000560445 SLC16A2P36021 539 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 NKX3-2P78367 333 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 CNTN2Q02246 1040 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 TLE2Q04725 743 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 KCNA10Q16322 511 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 BRDTQ58F21 947 aaPredicted RBP16.48■□□□□ 0.23
TPM1-223ENST00000560445 IQSEC1Q6DN90 963 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 ANKRD33Q7Z3H0 272 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 ANKS1AQ92625 1134 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 VTI1AQ96AJ9 217 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 CHMP4CQ96CF2 233 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 FGD4Q96M96 766 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 PDLIM7Q9NR12 457 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 Q9Y3F1 56 aa16.48■□□□□ 0.23
TPM1-223ENST00000560445 ERICH2A1L162 156 aa16.47■□□□□ 0.23
TPM1-223ENST00000560445 PQBP1O60828 265 aaKnown RBP16.47■□□□□ 0.23
TPM1-223ENST00000560445 RAG1P15918 1043 aa16.47■□□□□ 0.23
TPM1-223ENST00000560445 SART3Q15020 963 aaKnown RBP16.47■□□□□ 0.23
TPM1-223ENST00000560445 TTBK2Q6IQ55 1244 aa16.47■□□□□ 0.23
TPM1-223ENST00000560445 RNF207Q6ZRF8 634 aa16.47■□□□□ 0.23
TPM1-223ENST00000560445 DNERQ8NFT8 737 aa16.47■□□□□ 0.23
TPM1-223ENST00000560445 LTBP2Q14767 1821 aa16.47■□□□□ 0.23
TPM1-223ENST00000560445 SOWAHBA6NEL2 793 aa16.46■□□□□ 0.23
TPM1-223ENST00000560445 B4E1Z4 1266 aa16.46■□□□□ 0.23
TPM1-223ENST00000560445 KIAA0355O15063 1070 aa16.46■□□□□ 0.23
TPM1-223ENST00000560445 ASGR1P07306 291 aa16.46■□□□□ 0.23
TPM1-223ENST00000560445 PARP1P09874 1014 aaKnown RBP16.46■□□□□ 0.23
TPM1-223ENST00000560445 MUM1L1Q5H9M0 696 aa16.46■□□□□ 0.23
TPM1-223ENST00000560445 IFIT1BQ5T764 474 aaKnown RBP16.46■□□□□ 0.23
TPM1-223ENST00000560445 RALYLQ86SE5 291 aaKnown RBP16.46■□□□□ 0.23
TPM1-223ENST00000560445 TLK2Q86UE8 772 aa16.46■□□□□ 0.23
TPM1-223ENST00000560445 MCF2L2Q86YR7 1114 aa16.46■□□□□ 0.23
TPM1-223ENST00000560445 RGS22Q8NE09 1264 aa16.46■□□□□ 0.23
TPM1-223ENST00000560445 MORC4Q8TE76 937 aa16.46■□□□□ 0.23
TPM1-223ENST00000560445 TMEM39AQ9NV64 488 aa16.46■□□□□ 0.23
TPM1-223ENST00000560445 TNKSO95271 1327 aa16.45■□□□□ 0.22
TPM1-223ENST00000560445 ABCB11O95342 1321 aa16.45■□□□□ 0.22
TPM1-223ENST00000560445 NKRFO15226 690 aaKnown RBP eCLIP16.45■□□□□ 0.221e-6■■□□□ 14
TPM1-223ENST00000560445 DHX16O60231 1041 aaKnown RBP16.45■□□□□ 0.22
TPM1-223ENST00000560445 ALDH5A1P51649 535 aaPredicted RBP16.45■□□□□ 0.22
TPM1-223ENST00000560445 SNAP25P60880 206 aa16.45■□□□□ 0.22
TPM1-223ENST00000560445 IRX6P78412 446 aaPredicted RBP16.45■□□□□ 0.22
TPM1-223ENST00000560445 PDE4DQ08499 809 aa16.45■□□□□ 0.22
TPM1-223ENST00000560445 BAATQ14032 418 aaPredicted RBP16.45■□□□□ 0.22
TPM1-223ENST00000560445 FSCN1Q16658 493 aaKnown RBP16.45■□□□□ 0.22
TPM1-223ENST00000560445 LENG1Q96BZ8 264 aaPredicted RBP16.45■□□□□ 0.22
TPM1-223ENST00000560445 ZKSCAN3Q9BRR0 538 aa16.45■□□□□ 0.22
TPM1-223ENST00000560445 KATNBL1Q9H079 304 aa16.45■□□□□ 0.22
TPM1-223ENST00000560445 DNAH12Q6ZR08 3092 aa16.44■□□□□ 0.22
TPM1-223ENST00000560445 CALML3P27482 149 aa16.44■□□□□ 0.22
TPM1-223ENST00000560445 CPT1AP50416 773 aa16.44■□□□□ 0.22
TPM1-223ENST00000560445 CCSAPQ6IQ19 270 aaPredicted RBP16.44■□□□□ 0.22
TPM1-223ENST00000560445 RASGRP2Q7LDG7 609 aa16.44■□□□□ 0.22
TPM1-223ENST00000560445 ENAHQ8N8S7 591 aaPredicted RBP16.44■□□□□ 0.22
TPM1-223ENST00000560445 ZSWIM5Q9P217 1185 aa16.44■□□□□ 0.22
TPM1-223ENST00000560445 LRRC37A2A6NM11 1700 aa16.44■□□□□ 0.22
TPM1-223ENST00000560445 ARVCFO00192 962 aa16.43■□□□□ 0.22
TPM1-223ENST00000560445 SOX1O00570 391 aaPredicted RBP16.43■□□□□ 0.22
TPM1-223ENST00000560445 NFIBO00712 420 aa16.43■□□□□ 0.22
TPM1-223ENST00000560445 FPGSQ05932 587 aa16.43■□□□□ 0.22
TPM1-223ENST00000560445 CDC37Q16543 378 aaPredicted RBP16.43■□□□□ 0.22
TPM1-223ENST00000560445 FAM109BQ6ICB4 259 aaPredicted RBP16.43■□□□□ 0.22
TPM1-223ENST00000560445 KIAA1211Q6ZU35 1233 aa16.43■□□□□ 0.22
TPM1-223ENST00000560445 DEFB123Q8N688 67 aa16.43■□□□□ 0.22
TPM1-223ENST00000560445 BADQ92934 168 aa16.43■□□□□ 0.22
TPM1-223ENST00000560445 LRCH3Q96II8 777 aa16.43■□□□□ 0.22
TPM1-223ENST00000560445 POLR3EQ9NVU0 708 aa16.43■□□□□ 0.22
TPM1-223ENST00000560445 GNEQ9Y223 722 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms