RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 NFIBO00712 420 aa25.22■■□□□ 1.63
SNX1-210ENST00000560260 CTDNEP1O95476 244 aa25.22■■□□□ 1.63
SNX1-210ENST00000560260 IFNAR1P17181 557 aa25.22■■□□□ 1.63
SNX1-210ENST00000560260 CTU1Q7Z7A3 348 aaKnown RBP25.22■■□□□ 1.63
SNX1-210ENST00000560260 CHST13Q8NET6 341 aa25.22■■□□□ 1.63
SNX1-210ENST00000560260 USP6NLQ92738 828 aa25.22■■□□□ 1.63
SNX1-210ENST00000560260 AMNQ9BXJ7 453 aa25.22■■□□□ 1.63
SNX1-210ENST00000560260 ACAD9Q9H845 621 aa25.22■■□□□ 1.63
SNX1-210ENST00000560260 SRRDQ9UH36 339 aa25.22■■□□□ 1.63
SNX1-210ENST00000560260 LCTP09848 1927 aa25.22■■□□□ 1.63
SNX1-210ENST00000560260 OPLAHO14841 1288 aa25.21■■□□□ 1.63
SNX1-210ENST00000560260 COA7Q96BR5 231 aa25.21■■□□□ 1.63
SNX1-210ENST00000560260 CWC22Q9HCG8 908 aaKnown RBP25.21■■□□□ 1.63
SNX1-210ENST00000560260 V9GY48 417 aaPredicted RBP25.21■■□□□ 1.63
SNX1-210ENST00000560260 ABCB11O95342 1321 aa25.2■■□□□ 1.63
SNX1-210ENST00000560260 SLC15A5A6NIM6 579 aa25.2■■□□□ 1.62
SNX1-210ENST00000560260 MMP19Q99542 508 aa25.2■■□□□ 1.62
SNX1-210ENST00000560260 A1CFQ9NQ94 594 aaKnown RBP25.2■■□□□ 1.62
SNX1-210ENST00000560260 SEC63Q9UGP8 760 aaKnown RBP25.2■■□□□ 1.62
SNX1-210ENST00000560260 COBLO75128 1261 aa25.19■■□□□ 1.62
SNX1-210ENST00000560260 ADORA2AP29274 412 aa25.19■■□□□ 1.62
SNX1-210ENST00000560260 FLT3LGP49771 235 aa25.19■■□□□ 1.62
SNX1-210ENST00000560260 PKN1Q16512 942 aa25.19■■□□□ 1.62
SNX1-210ENST00000560260 GPKOWQ92917 476 aaPredicted RBP eCLIP25.19■■□□□ 1.62
SNX1-210ENST00000560260 SLC26A6Q9BXS9 759 aa25.19■■□□□ 1.62
SNX1-210ENST00000560260 FBXO40Q9UH90 709 aa25.19■■□□□ 1.62
SNX1-210ENST00000560260 PNMA2Q9UL42 364 aa25.19■■□□□ 1.62
SNX1-210ENST00000560260 PCDHA1Q9Y5I3 950 aa25.19■■□□□ 1.62
SNX1-210ENST00000560260 IVNS1ABPQ9Y6Y0 642 aa25.19■■□□□ 1.62
SNX1-210ENST00000560260 ZNFX1Q9P2E3 1918 aaKnown RBP25.19■■□□□ 1.62
SNX1-210ENST00000560260 GNRH1P01148 92 aa25.18■■□□□ 1.62
SNX1-210ENST00000560260 FCER1AP12319 257 aa25.18■■□□□ 1.62
SNX1-210ENST00000560260 WWC2Q6AWC2 1192 aa25.18■■□□□ 1.62
SNX1-210ENST00000560260 TYW1BQ6NUM6 668 aa25.18■■□□□ 1.62
SNX1-210ENST00000560260 CCDC83Q8IWF9 413 aa25.18■■□□□ 1.62
SNX1-210ENST00000560260 ABRAQ8N0Z2 381 aa25.18■■□□□ 1.62
SNX1-210ENST00000560260 SOCS4Q8WXH5 440 aa25.18■■□□□ 1.62
SNX1-210ENST00000560260 TBC1D5Q92609 795 aa25.18■■□□□ 1.62
SNX1-210ENST00000560260 RNF26Q9BY78 433 aaPredicted RBP25.18■■□□□ 1.62
SNX1-210ENST00000560260 PTCH2Q9Y6C5 1203 aa25.18■■□□□ 1.62
SNX1-210ENST00000560260 CPLX1O14810 134 aa25.17■■□□□ 1.62
SNX1-210ENST00000560260 PRPF3O43395 683 aaKnown RBP25.17■■□□□ 1.62
SNX1-210ENST00000560260 STRNO43815 780 aa25.17■■□□□ 1.62
SNX1-210ENST00000560260 PGK2P07205 417 aa25.17■■□□□ 1.62
SNX1-210ENST00000560260 MAP2K5Q13163 448 aa25.17■■□□□ 1.62
SNX1-210ENST00000560260 ARHGEF6Q15052 776 aa25.17■■□□□ 1.62
SNX1-210ENST00000560260 SLC30A10Q6XR72 485 aa25.17■■□□□ 1.62
SNX1-210ENST00000560260 IL27Q8NEV9 243 aa25.17■■□□□ 1.62
SNX1-210ENST00000560260 NPLOC4Q8TAT6 608 aa25.17■■□□□ 1.62
SNX1-210ENST00000560260 SHISA4Q96DD7 197 aa25.17■■□□□ 1.62
SNX1-210ENST00000560260 ZSCAN31Q96LW9 406 aaPredicted RBP25.17■■□□□ 1.62
SNX1-210ENST00000560260 NUDT12Q9BQG2 462 aa25.17■■□□□ 1.62
SNX1-210ENST00000560260 PLXNA1Q9UIW2 1896 aa25.17■■□□□ 1.62
SNX1-210ENST00000560260 DNAJC25-GNG10A0A024R161 153 aa25.16■■□□□ 1.62
SNX1-210ENST00000560260 CYP2B6P20813 491 aa25.16■■□□□ 1.62
SNX1-210ENST00000560260 HOXD10P28358 340 aa25.16■■□□□ 1.62
SNX1-210ENST00000560260 KCTD2Q14681 263 aa25.16■■□□□ 1.62
SNX1-210ENST00000560260 PFKFB3Q16875 520 aaPredicted RBP25.16■■□□□ 1.62
SNX1-210ENST00000560260 NSMFQ6X4W1 530 aa25.16■■□□□ 1.62
SNX1-210ENST00000560260 HEATR3Q7Z4Q2 680 aa25.16■■□□□ 1.62
SNX1-210ENST00000560260 NSUN7Q8NE18 718 aaKnown RBP25.16■■□□□ 1.62
SNX1-210ENST00000560260 TMX3Q96JJ7 454 aa25.16■■□□□ 1.62
SNX1-210ENST00000560260 FGD4Q96M96 766 aa25.16■■□□□ 1.62
SNX1-210ENST00000560260 PTPN22Q9Y2R2 807 aa25.16■■□□□ 1.62
SNX1-210ENST00000560260 MRPL11Q9Y3B7 192 aaKnown RBP25.16■■□□□ 1.62
SNX1-210ENST00000560260 JAK2O60674 1132 aa25.15■■□□□ 1.62
SNX1-210ENST00000560260 ANKRD35Q8N283 1001 aa25.15■■□□□ 1.62
SNX1-210ENST00000560260 PURBQ96QR8 312 aaKnown RBP25.15■■□□□ 1.62
SNX1-210ENST00000560260 SH2B1Q9NRF2 756 aaPredicted RBP25.15■■□□□ 1.62
SNX1-210ENST00000560260 CYP39A1Q9NYL5 469 aa25.15■■□□□ 1.62
SNX1-210ENST00000560260 STXBP3O00186 592 aa25.14■■□□□ 1.62
SNX1-210ENST00000560260 HOXC6P09630 235 aa25.14■■□□□ 1.62
SNX1-210ENST00000560260 SCG2P13521 617 aa25.14■■□□□ 1.62
SNX1-210ENST00000560260 RGS2P41220 211 aa25.14■■□□□ 1.62
SNX1-210ENST00000560260 PRMT2P55345 433 aa25.14■■□□□ 1.62
SNX1-210ENST00000560260 IRF5Q13568 498 aa25.14■■□□□ 1.62
SNX1-210ENST00000560260 BAATQ14032 418 aaPredicted RBP25.14■■□□□ 1.62
SNX1-210ENST00000560260 CCL14Q16627 93 aa25.14■■□□□ 1.62
SNX1-210ENST00000560260 CPLX2Q6PUV4 134 aaKnown RBP25.14■■□□□ 1.62
SNX1-210ENST00000560260 APBA2Q99767 749 aa25.14■■□□□ 1.62
SNX1-210ENST00000560260 ASTN1O14525 1302 aa25.14■■□□□ 1.61
SNX1-210ENST00000560260 STK36Q9NRP7 1315 aa25.14■■□□□ 1.61
SNX1-210ENST00000560260 PTPDC1A2A3K4 754 aa25.13■■□□□ 1.61
SNX1-210ENST00000560260 MCM2P49736 904 aa25.13■■□□□ 1.61
SNX1-210ENST00000560260 RPS6P62753 249 aaKnown RBP25.13■■□□□ 1.61
SNX1-210ENST00000560260 CNTN2Q02246 1040 aa25.13■■□□□ 1.61
SNX1-210ENST00000560260 GHRHRQ02643 423 aa25.13■■□□□ 1.61
SNX1-210ENST00000560260 SSRP1Q08945 709 aaKnown RBP25.13■■□□□ 1.61
SNX1-210ENST00000560260 ZNF792Q3KQV3 632 aa25.13■■□□□ 1.61
SNX1-210ENST00000560260 AIFM3Q96NN9 605 aa25.13■■□□□ 1.61
SNX1-210ENST00000560260 FLRT1Q9NZU1 646 aa25.13■■□□□ 1.61
SNX1-210ENST00000560260 FDPSP14324 419 aaKnown RBP25.12■■□□□ 1.61
SNX1-210ENST00000560260 FAM133AQ8N9E0 248 aa25.12■■□□□ 1.61
SNX1-210ENST00000560260 DDX11Q96FC9 970 aa25.12■■□□□ 1.61
SNX1-210ENST00000560260 BARHL2Q9NY43 387 aa25.12■■□□□ 1.61
SNX1-210ENST00000560260 COL20A1Q9P218 1284 aa25.12■■□□□ 1.61
SNX1-210ENST00000560260 RBM27Q9P2N5 1060 aaKnown RBP25.12■■□□□ 1.61
SNX1-210ENST00000560260 CENPFP49454 3210 aa25.12■■□□□ 1.61
SNX1-210ENST00000560260 PFASO15067 1338 aa25.12■■□□□ 1.61
SNX1-210ENST00000560260 CDKL5O76039 1030 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms