RNA–Protein interactions for RNA: ENST00000559309.5

SNRPA1-207, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 5

Gene SNRPA1, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-207ENST00000559309 ANKRD13CQ8N6S4 541 aa17.12■□□□□ 0.33
SNRPA1-207ENST00000559309 SLC26A6Q9BXS9 759 aa17.12■□□□□ 0.33
SNRPA1-207ENST00000559309 PORCNQ9H237 461 aa17.12■□□□□ 0.33
SNRPA1-207ENST00000559309 SH3GLB2Q9NR46 395 aa17.12■□□□□ 0.33
SNRPA1-207ENST00000559309 CPA4Q9UI42 421 aa17.12■□□□□ 0.33
SNRPA1-207ENST00000559309 ZSWIM8A7E2V4 1837 aa17.12■□□□□ 0.33
SNRPA1-207ENST00000559309 ESYT2A0FGR8 921 aa17.11■□□□□ 0.33
SNRPA1-207ENST00000559309 STXBP3O00186 592 aa17.11■□□□□ 0.33
SNRPA1-207ENST00000559309 TBC1D8O95759 1140 aa17.11■□□□□ 0.33
SNRPA1-207ENST00000559309 CTGFP29279 349 aa17.11■□□□□ 0.33
SNRPA1-207ENST00000559309 CAP1Q01518 475 aa17.11■□□□□ 0.33
SNRPA1-207ENST00000559309 TRAF1Q13077 416 aa17.11■□□□□ 0.33
SNRPA1-207ENST00000559309 NPY5RQ15761 445 aa17.11■□□□□ 0.33
SNRPA1-207ENST00000559309 SNRNP48Q6IEG0 339 aaKnown RBP17.11■□□□□ 0.33
SNRPA1-207ENST00000559309 HOMER1Q86YM7 354 aa17.11■□□□□ 0.33
SNRPA1-207ENST00000559309 TRIM22Q8IYM9 498 aa17.11■□□□□ 0.33
SNRPA1-207ENST00000559309 CHST13Q8NET6 341 aa17.11■□□□□ 0.33
SNRPA1-207ENST00000559309 MROH8Q9H579 483 aa17.11■□□□□ 0.33
SNRPA1-207ENST00000559309 ABCB11O95342 1321 aa17.11■□□□□ 0.33
SNRPA1-207ENST00000559309 DTNBO60941 627 aa17.1■□□□□ 0.33
SNRPA1-207ENST00000559309 TAL1P17542 331 aaPredicted RBP17.1■□□□□ 0.33
SNRPA1-207ENST00000559309 CCDC174Q6PII3 467 aa17.1■□□□□ 0.33
SNRPA1-207ENST00000559309 AIFM3Q96NN9 605 aa17.1■□□□□ 0.33
SNRPA1-207ENST00000559309 PAGR1Q9BTK6 254 aa17.1■□□□□ 0.33
SNRPA1-207ENST00000559309 ORC3Q9UBD5 711 aaPredicted RBP17.1■□□□□ 0.33
SNRPA1-207ENST00000559309 SEC63Q9UGP8 760 aaKnown RBP17.1■□□□□ 0.33
SNRPA1-207ENST00000559309 CCPG1Q9ULG6 757 aa17.1■□□□□ 0.33
SNRPA1-207ENST00000559309 ISY1Q9ULR0 285 aaKnown RBP17.1■□□□□ 0.33
SNRPA1-207ENST00000559309 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.1■□□□□ 0.33
SNRPA1-207ENST00000559309 PCDHA1Q9Y5I3 950 aa17.1■□□□□ 0.33
SNRPA1-207ENST00000559309 GPR25O00155 361 aa17.09■□□□□ 0.33
SNRPA1-207ENST00000559309 PPFIA3O75145 1194 aa17.09■□□□□ 0.33
SNRPA1-207ENST00000559309 ERCC3P19447 782 aa17.09■□□□□ 0.33
SNRPA1-207ENST00000559309 MUM1L1Q5H9M0 696 aa17.09■□□□□ 0.33
SNRPA1-207ENST00000559309 ABRAQ8N0Z2 381 aa17.09■□□□□ 0.33
SNRPA1-207ENST00000559309 CPXCR1Q8N123 301 aa17.09■□□□□ 0.33
SNRPA1-207ENST00000559309 SAMD3Q8N6K7 520 aa17.09■□□□□ 0.33
SNRPA1-207ENST00000559309 USP6NLQ92738 828 aa17.09■□□□□ 0.33
SNRPA1-207ENST00000559309 COA7Q96BR5 231 aa17.09■□□□□ 0.33
SNRPA1-207ENST00000559309 ZMYND12Q9H0C1 365 aa17.09■□□□□ 0.33
SNRPA1-207ENST00000559309 ZNFX1Q9P2E3 1918 aaKnown RBP17.09■□□□□ 0.33
SNRPA1-207ENST00000559309 CASP8AP2Q9UKL3 1982 aa17.08■□□□□ 0.33
SNRPA1-207ENST00000559309 DNAJC25-GNG10A0A024R161 153 aa17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 M0R2N6 131 aa17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 PIK3CDO00329 1044 aa17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 IGHA2P01877 340 aa17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 MAPK4P31152 587 aa17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 HSD17B4P51659 736 aa17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 CCNA1P78396 465 aa17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 LACTBP83111 547 aaPredicted RBP17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 GPKOWQ92917 476 aaPredicted RBP eCLIP17.08■□□□□ 0.324e-9■■■□□ 16.8
SNRPA1-207ENST00000559309 TRERF1Q96PN7 1200 aa17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 PHF20Q9BVI0 1012 aa17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 EFCC1Q9HA90 598 aa17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 RNF146Q9NTX7 359 aa17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 MAP3K20Q9NYL2 800 aaKnown RBP17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 FBXO40Q9UH90 709 aa17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 MRPL11Q9Y3B7 192 aaKnown RBP17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 DOCK3Q8IZD9 2030 aa17.08■□□□□ 0.32
SNRPA1-207ENST00000559309 NFIBO00712 420 aa17.07■□□□□ 0.32
SNRPA1-207ENST00000559309 MEIS2O14770 477 aa17.07■□□□□ 0.32
SNRPA1-207ENST00000559309 GJB2P29033 226 aa17.07■□□□□ 0.32
SNRPA1-207ENST00000559309 DDIT3P35638 169 aa17.07■□□□□ 0.32
SNRPA1-207ENST00000559309 CLK2P49760 499 aaKnown RBP17.07■□□□□ 0.32
SNRPA1-207ENST00000559309 SP3Q02447 781 aa17.07■□□□□ 0.32
SNRPA1-207ENST00000559309 MORN1Q5T089 497 aa17.07■□□□□ 0.32
SNRPA1-207ENST00000559309 DAGLBQ8NCG7 672 aa17.07■□□□□ 0.32
SNRPA1-207ENST00000559309 WASF1Q92558 559 aa17.07■□□□□ 0.32
SNRPA1-207ENST00000559309 DDX11Q96FC9 970 aa17.07■□□□□ 0.32
SNRPA1-207ENST00000559309 ALG1Q9BT22 464 aa17.07■□□□□ 0.32
SNRPA1-207ENST00000559309 ACAD9Q9H845 621 aa17.07■□□□□ 0.32
SNRPA1-207ENST00000559309 GJD2Q9UKL4 321 aa17.07■□□□□ 0.32
SNRPA1-207ENST00000559309 ADAMTS3O15072 1205 aa17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 STRNO43815 780 aa17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 ALAS1P13196 640 aa17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 AKAP17AQ02040 695 aaKnown RBP17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 GRB14Q14449 540 aa17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 BECN1Q14457 450 aa17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 USH1GQ495M9 461 aa17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 SAMD1Q6SPF0 538 aaPredicted RBP17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 HEATR3Q7Z4Q2 680 aa17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 GPR142Q7Z601 462 aa17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 FBXO18Q8NFZ0 1043 aa17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 PIBF1Q8WXW3 757 aa17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 TBC1D5Q92609 795 aa17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 RIC8AQ9NPQ8 531 aa17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 A1CFQ9NQ94 594 aaKnown RBP17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 VPS54Q9P1Q0 977 aa17.06■□□□□ 0.32
SNRPA1-207ENST00000559309 LRRC37A2A6NM11 1700 aa17.05■□□□□ 0.32
SNRPA1-207ENST00000559309 FRMPD4Q14CM0 1322 aa17.05■□□□□ 0.32
SNRPA1-207ENST00000559309 PTPREP23469 700 aa17.05■□□□□ 0.32
SNRPA1-207ENST00000559309 PLS1Q14651 629 aa17.05■□□□□ 0.32
SNRPA1-207ENST00000559309 ZNF296Q8WUU4 475 aaPredicted RBP17.05■□□□□ 0.32
SNRPA1-207ENST00000559309 TRIM47Q96LD4 638 aa17.05■□□□□ 0.32
SNRPA1-207ENST00000559309 FGD4Q96M96 766 aa17.05■□□□□ 0.32
SNRPA1-207ENST00000559309 GJB4Q9NTQ9 266 aa17.05■□□□□ 0.32
SNRPA1-207ENST00000559309 CYP39A1Q9NYL5 469 aa17.05■□□□□ 0.32
SNRPA1-207ENST00000559309 SMC3Q9UQE7 1217 aa17.05■□□□□ 0.32
SNRPA1-207ENST00000559309 CTDP1Q9Y5B0 961 aaPredicted RBP17.05■□□□□ 0.32
SNRPA1-207ENST00000559309 PLXNA1Q9UIW2 1896 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms