RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 STAG2Q8N3U4 1231 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 C4orf32Q8N8J7 132 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 IGSF22Q8N9C0 903 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 RASSF8Q8NHQ8 419 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 GPKOWQ92917 476 aaPredicted RBP eCLIP8.19□□□□□ -1.1
VPS13C-206ENST00000558338 ZMYND12Q9H0C1 365 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 BCCIPQ9P287 314 aaKnown RBP eCLIP8.19□□□□□ -1.1
VPS13C-206ENST00000558338 PCDHA6Q9UN73 950 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 PCDHA8Q9Y5H6 950 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 MYO3BQ8WXR4 1341 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 MYH8P13535 1937 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 KLRF2D3W0D1 207 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 H7C1D1 291 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 GYS1P13807 737 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 PBX1P40424 430 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 UBA7P41226 1012 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 NOVP48745 357 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 NAPAP54920 295 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 NONOQ15233 471 aaKnown RBP eCLIP8.19□□□□□ -1.1
VPS13C-206ENST00000558338 ASPRV1Q53RT3 343 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 NOM1Q5C9Z4 860 aaKnown RBP8.19□□□□□ -1.1
VPS13C-206ENST00000558338 MFSD14BQ5SR56 506 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 PPP1R18Q6NYC8 613 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 APTXQ7Z2E3 356 aaKnown RBP8.19□□□□□ -1.1
VPS13C-206ENST00000558338 MNS1Q8NEH6 495 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 MED15Q96RN5 788 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 OGFRQ9NZT2 677 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 TRPC5Q9UL62 973 aaPredicted RBP8.19□□□□□ -1.1
VPS13C-206ENST00000558338 MFAP3LO75121 409 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 OR52Z1P0C646 297 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 FECHP22830 423 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 CASQ1P31415 396 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 STX17P56962 302 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 AMPD3Q01432 767 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 TUBB2AQ13885 445 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 IL17AQ16552 155 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 SLC4A8Q2Y0W8 1093 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 HSP90AA4PQ58FG1 418 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 DCAF8Q5TAQ9 597 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 TRIM65Q6PJ69 517 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 PARP9Q8IXQ6 854 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 TBC1D16Q8TBP0 767 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 NELFBQ8WX92 580 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 TUBB2BQ9BVA1 445 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 THAP9Q9H5L6 903 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 ARGLU1Q9NWB6 273 aaPredicted RBP8.18□□□□□ -1.1
VPS13C-206ENST00000558338 SWAP70Q9UH65 585 aa8.18□□□□□ -1.1
VPS13C-206ENST00000558338 SAP30BPQ9UHR5 308 aaKnown RBP8.18□□□□□ -1.1
VPS13C-206ENST00000558338 LRRC10BA6NIK2 292 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 PSMA7O14818 248 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 CYTH3O43739 400 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 HOXB3P14651 431 aaPredicted RBP8.17□□□□□ -1.1
VPS13C-206ENST00000558338 EEF1GP26641 437 aaKnown RBP8.17□□□□□ -1.1
VPS13C-206ENST00000558338 COPB1P53618 953 aaKnown RBP8.17□□□□□ -1.1
VPS13C-206ENST00000558338 ADKP55263 362 aaKnown RBP8.17□□□□□ -1.1
VPS13C-206ENST00000558338 RHBDL3P58872 404 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 INF2Q27J81 1249 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 NEK8Q86SG6 692 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 FAM114A1Q8IWE2 563 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 SP8Q8IXZ3 490 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 COA1Q9GZY4 146 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 BLZF1Q9H2G9 400 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 MAGEC2Q9UBF1 373 aaPredicted RBP8.17□□□□□ -1.1
VPS13C-206ENST00000558338 TTF2Q9UNY4 1162 aaKnown RBP8.17□□□□□ -1.1
VPS13C-206ENST00000558338 BICDL2A1A5D9 508 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 KLRG2A4D1S0 409 aaPredicted RBP8.17□□□□□ -1.1
VPS13C-206ENST00000558338 EFCAB8A8MWE9 144 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 KCNJ18B7U540 433 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 PPEF1O14829 653 aaPredicted RBP8.17□□□□□ -1.1
VPS13C-206ENST00000558338 N4BP3O15049 544 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 RHOBTB3O94955 611 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 TUBB4BP68371 445 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 KCNJ12Q14500 433 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 KARSQ15046 597 aaKnown RBP8.17□□□□□ -1.1
VPS13C-206ENST00000558338 KRT31Q15323 416 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 ELF2Q15723 593 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 GRIK5Q16478 980 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 TCP11X2Q5H9J9 407 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 TYW1BQ6NUM6 668 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 CABP7Q86V35 215 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 TMTC1Q8IUR5 882 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 SEPT12Q8IYM1 358 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 ADSSL1Q8N142 457 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 REXO1Q8N1G1 1221 aaKnown RBP8.17□□□□□ -1.1
VPS13C-206ENST00000558338 SLC44A5Q8NCS7 719 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 RASGRP4Q8TDF6 673 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 CALML4Q96GE6 196 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 DHTKD1Q96HY7 919 aaPredicted RBP8.17□□□□□ -1.1
VPS13C-206ENST00000558338 RAB34Q9BZG1 259 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 KBTBD4Q9NVX7 518 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 AFF2P51816 1311 aa8.17□□□□□ -1.1
VPS13C-206ENST00000558338 NRXN2Q9P2S2 1712 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 A0A1W2PQC6 194 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 SMCO2A6NFE2 343 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 C6orf229H3BNL8 230 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 TEX33O43247 280 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 KIF5CO60282 957 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 URI1O94763 535 aaPredicted RBP8.16□□□□□ -1.1
VPS13C-206ENST00000558338 HOXB1P14653 301 aaPredicted RBP8.16□□□□□ -1.1
VPS13C-206ENST00000558338 CASP1P29466 404 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms