RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 FBXO11Q86XK2 927 aa17.23■□□□□ 0.35
VIPAS39-210ENST00000557466 ABRAQ8N0Z2 381 aa17.23■□□□□ 0.35
VIPAS39-210ENST00000557466 RAET1EQ8TD07 263 aa17.23■□□□□ 0.35
VIPAS39-210ENST00000557466 FBXO40Q9UH90 709 aa17.23■□□□□ 0.35
VIPAS39-210ENST00000557466 PNMA2Q9UL42 364 aa17.23■□□□□ 0.35
VIPAS39-210ENST00000557466 TPCN1Q9ULQ1 816 aa17.23■□□□□ 0.35
VIPAS39-210ENST00000557466 NFIBO00712 420 aa17.22■□□□□ 0.35
VIPAS39-210ENST00000557466 CYP2B6P20813 491 aa17.22■□□□□ 0.35
VIPAS39-210ENST00000557466 ADD1P35611 737 aaKnown RBP17.22■□□□□ 0.35
VIPAS39-210ENST00000557466 RGS2P41220 211 aa17.22■□□□□ 0.35
VIPAS39-210ENST00000557466 CCT2P78371 535 aaKnown RBP17.22■□□□□ 0.35
VIPAS39-210ENST00000557466 KCTD2Q14681 263 aa17.22■□□□□ 0.35
VIPAS39-210ENST00000557466 ANKRD1Q15327 319 aa17.22■□□□□ 0.35
VIPAS39-210ENST00000557466 CCDC82Q8N4S0 544 aa17.22■□□□□ 0.35
VIPAS39-210ENST00000557466 CLEC4DQ8WXI8 215 aa17.22■□□□□ 0.35
VIPAS39-210ENST00000557466 RRP36Q96EU6 259 aaKnown RBP17.22■□□□□ 0.35
VIPAS39-210ENST00000557466 ZNF274Q96GC6 653 aaPredicted RBP17.22■□□□□ 0.35
VIPAS39-210ENST00000557466 APBA2Q99767 749 aa17.22■□□□□ 0.35
VIPAS39-210ENST00000557466 NCOA5Q9HCD5 579 aaKnown RBP17.22■□□□□ 0.35
VIPAS39-210ENST00000557466 ABCB11O95342 1321 aa17.21■□□□□ 0.35
VIPAS39-210ENST00000557466 LRRC37A2A6NM11 1700 aa17.21■□□□□ 0.35
VIPAS39-210ENST00000557466 PNMA6FA0A0J9YX94 578 aa17.21■□□□□ 0.35
VIPAS39-210ENST00000557466 hCG_1642624A0A1W2PR95 340 aa17.21■□□□□ 0.35
VIPAS39-210ENST00000557466 COBLO75128 1261 aa17.21■□□□□ 0.35
VIPAS39-210ENST00000557466 PGK2P07205 417 aa17.21■□□□□ 0.35
VIPAS39-210ENST00000557466 STK3Q13188 491 aa17.21■□□□□ 0.35
VIPAS39-210ENST00000557466 PPP2R5BQ15173 497 aa17.21■□□□□ 0.35
VIPAS39-210ENST00000557466 RABEP1Q15276 862 aa17.21■□□□□ 0.35
VIPAS39-210ENST00000557466 NPLOC4Q8TAT6 608 aa17.21■□□□□ 0.35
VIPAS39-210ENST00000557466 AMNQ9BXJ7 453 aa17.21■□□□□ 0.35
VIPAS39-210ENST00000557466 A1CFQ9NQ94 594 aaKnown RBP17.21■□□□□ 0.35
VIPAS39-210ENST00000557466 MCM3APO60318 1980 aa17.2■□□□□ 0.34
VIPAS39-210ENST00000557466 DNAJC25-GNG10A0A024R161 153 aa17.2■□□□□ 0.34
VIPAS39-210ENST00000557466 CCDC196A0A1B0GTZ2 297 aa17.2■□□□□ 0.34
VIPAS39-210ENST00000557466 ADCY3O60266 1144 aa17.2■□□□□ 0.34
VIPAS39-210ENST00000557466 LARGE1O95461 756 aa17.2■□□□□ 0.34
VIPAS39-210ENST00000557466 HOXC6P09630 235 aa17.2■□□□□ 0.34
VIPAS39-210ENST00000557466 ELNP15502 786 aa17.2■□□□□ 0.34
VIPAS39-210ENST00000557466 CCL14Q16627 93 aa17.2■□□□□ 0.34
VIPAS39-210ENST00000557466 ANKRD35Q8N283 1001 aa17.2■□□□□ 0.34
VIPAS39-210ENST00000557466 TRIB2Q92519 343 aa17.2■□□□□ 0.34
VIPAS39-210ENST00000557466 SEC63Q9UGP8 760 aaKnown RBP17.2■□□□□ 0.34
VIPAS39-210ENST00000557466 XRCC5P13010 732 aaKnown RBP17.19■□□□□ 0.34
VIPAS39-210ENST00000557466 GRK4P32298 578 aa17.19■□□□□ 0.34
VIPAS39-210ENST00000557466 NTRK3Q16288 839 aa17.19■□□□□ 0.34
VIPAS39-210ENST00000557466 NSMFQ6X4W1 530 aa17.19■□□□□ 0.34
VIPAS39-210ENST00000557466 SLC30A10Q6XR72 485 aa17.19■□□□□ 0.34
VIPAS39-210ENST00000557466 DPP9Q86TI2 863 aa17.19■□□□□ 0.34
VIPAS39-210ENST00000557466 TNS4Q8IZW8 715 aa17.19■□□□□ 0.34
VIPAS39-210ENST00000557466 SLAIN1Q8ND83 568 aa17.19■□□□□ 0.34
VIPAS39-210ENST00000557466 SH3TC2Q8TF17 1288 aa17.19■□□□□ 0.34
VIPAS39-210ENST00000557466 DDX11Q96FC9 970 aa17.19■□□□□ 0.34
VIPAS39-210ENST00000557466 FLRT1Q9NZU1 646 aa17.19■□□□□ 0.34
VIPAS39-210ENST00000557466 PCDHA1Q9Y5I3 950 aa17.19■□□□□ 0.34
VIPAS39-210ENST00000557466 PFASO15067 1338 aa17.19■□□□□ 0.34
VIPAS39-210ENST00000557466 OPLAHO14841 1288 aa17.18■□□□□ 0.34
VIPAS39-210ENST00000557466 PFKFB2O60825 505 aa17.18■□□□□ 0.34
VIPAS39-210ENST00000557466 SCRN1Q12765 414 aa17.18■□□□□ 0.34
VIPAS39-210ENST00000557466 ME3Q16798 604 aa17.18■□□□□ 0.34
VIPAS39-210ENST00000557466 ZNF792Q3KQV3 632 aa17.18■□□□□ 0.34
VIPAS39-210ENST00000557466 SLC9C1Q4G0N8 1177 aa17.18■□□□□ 0.34
VIPAS39-210ENST00000557466 PXYLP1Q8TE99 480 aa17.18■□□□□ 0.34
VIPAS39-210ENST00000557466 FGD4Q96M96 766 aa17.18■□□□□ 0.34
VIPAS39-210ENST00000557466 SLKQ9H2G2 1235 aaPredicted RBP17.18■□□□□ 0.34
VIPAS39-210ENST00000557466 CYP39A1Q9NYL5 469 aa17.18■□□□□ 0.34
VIPAS39-210ENST00000557466 MRPL11Q9Y3B7 192 aaKnown RBP17.18■□□□□ 0.34
VIPAS39-210ENST00000557466 PPFIA3O75145 1194 aa17.17■□□□□ 0.34
VIPAS39-210ENST00000557466 IFNAR1P17181 557 aa17.17■□□□□ 0.34
VIPAS39-210ENST00000557466 FAM133AQ8N9E0 248 aa17.17■□□□□ 0.34
VIPAS39-210ENST00000557466 GPKOWQ92917 476 aaPredicted RBP eCLIP17.17■□□□□ 0.34
VIPAS39-210ENST00000557466 PHKBQ93100 1093 aa17.17■□□□□ 0.34
VIPAS39-210ENST00000557466 MAML3Q96JK9 1138 aa17.17■□□□□ 0.34
VIPAS39-210ENST00000557466 V9GY48 417 aaPredicted RBP17.17■□□□□ 0.34
VIPAS39-210ENST00000557466 FRMPD3Q5JV73 1810 aa17.17■□□□□ 0.34
VIPAS39-210ENST00000557466 PTPDC1A2A3K4 754 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 POTEB2H3BUK9 544 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 HMGCRP04035 888 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 INHAP05111 366 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 CNTN2Q02246 1040 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 TRIM32Q13049 653 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 TRAF1Q13077 416 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 BAATQ14032 418 aaPredicted RBP17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 WWC2Q6AWC2 1192 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 RNF207Q6ZRF8 634 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 HEATR3Q7Z4Q2 680 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 NECAB1Q8N987 351 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 TBC1D5Q92609 795 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 GTF3C6Q969F1 213 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 ARMC5Q96C12 935 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 PURBQ96QR8 312 aaKnown RBP17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 SLC5A4Q9NY91 659 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 ASTN1O14525 1302 aa17.16■□□□□ 0.34
VIPAS39-210ENST00000557466 SOWAHBA6NEL2 793 aa17.15■□□□□ 0.34
VIPAS39-210ENST00000557466 CPLX1O14810 134 aa17.15■□□□□ 0.34
VIPAS39-210ENST00000557466 PRPF3O43395 683 aaKnown RBP17.15■□□□□ 0.34
VIPAS39-210ENST00000557466 CD2BP2O95400 341 aaKnown RBP17.15■□□□□ 0.34
VIPAS39-210ENST00000557466 IGHA2P01877 340 aa17.15■□□□□ 0.34
VIPAS39-210ENST00000557466 CALML3P27482 149 aa17.15■□□□□ 0.34
VIPAS39-210ENST00000557466 RPS6P62753 249 aaKnown RBP17.15■□□□□ 0.34
VIPAS39-210ENST00000557466 ST3GAL1Q11201 340 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms