RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	ARHGAP44	Q17R89	818 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	VWA3B	Q502W6	1294 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	ARHGEF2	Q92974	986 aa	Known RBP	5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	MS4A14	Q96JA4	679 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	RAB3IP	Q96QF0	476 aa	Predicted RBP	5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	LY9	Q9HBG7	655 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	NKIRAS1	Q9NYS0	192 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	ADGRG1	Q9Y653	693 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005		A6NNZ2	444 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	PALM	O75781	387 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	DDAH1	O94760	285 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	GCNT3	O95395	438 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	SCG2	P13521	617 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	LONP1	P36776	959 aa	Known RBP	5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	CETN2	P41208	172 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	GNAQ	P50148	359 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	USP14	P54578	494 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	MAP3K9	P80192	1104 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	TUBB8	Q3ZCM7	444 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	ZNF804A	Q7Z570	1209 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	SYCE1	Q8N0S2	351 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	RIN2	Q8WYP3	895 aa	Predicted RBP	5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	EHMT1	Q9H9B1	1298 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	LCMT1	Q9UIC8	334 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	A2ML1	A8K2U0	1454 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	SMCO2	A6NFE2	343 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	DDX39A	O00148	427 aa	Known RBP	5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	IGKV5-2	P06315	115 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	GNA11	P29992	359 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	SLC8A1	P32418	973 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	GUCY1A3	Q02108	690 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	NONO	Q15233	471 aa	Known RBP eCLIP	5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	MUM1	Q2TAK8	710 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	FYB2	Q5VWT5	728 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	STXBP4	Q6ZWJ1	553 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	OTUD6A	Q7L8S5	288 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	NLRP14	Q86W24	1093 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	GPBP1	Q86WP2	473 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	PARP9	Q8IXQ6	854 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	CCDC24	Q8N4L8	307 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	TGFBRAP1	Q8WUH2	860 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	P2RX5	Q93086	422 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	PACSIN2	Q9UNF0	486 aa	Predicted RBP	5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	NOVA2	Q9UNW9	492 aa	Known RBP	5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	FRMD4B	Q9Y2L6	1034 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	ABCC12	Q96J65	1359 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	SPOP	O43791	374 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	GYG1	P46976	350 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	KIF11	P52732	1056 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	EXOSC10	Q01780	885 aa	Known RBP	5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	CETN1	Q12798	172 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	CALCOCO2	Q13137	446 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	BEND6	Q5SZJ8	279 aa	Predicted RBP	5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	ALS2CL	Q60I27	953 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	CCDC105	Q8IYK2	499 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	RNF10	Q8N5U6	811 aa	Known RBP	5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	PPP1R14C	Q8TAE6	165 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	STMN2	Q93045	179 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	FAM212A	Q96EL1	285 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	AZI2	Q9H6S1	392 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	CTTNBP2NL	Q9P2B4	639 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	AMFR	Q9UKV5	643 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	IKBKG	Q9Y6K9	419 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	PLEKHG1	Q9ULL1	1385 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	MYO1F	O00160	1098 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	SASH3	O75995	380 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	LDHB	P07195	334 aa	Known RBP	5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	H2AFX	P16104	143 aa	Predicted RBP	5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	MCAM	P43121	646 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	SF3B2	Q13435	895 aa	Known RBP	5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	GKAP1	Q5VSY0	366 aa	Predicted RBP	5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	CAPN12	Q6ZSI9	719 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	NBPF5P	Q86XG9	351 aa	Predicted RBP	5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	CCDC197	Q8NCU1	140 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	CD248	Q9HCU0	757 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	ZSWIM5	Q9P217	1185 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	ARAP3	Q8WWN8	1544 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	ESYT3	A0FGR9	886 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	RIMBP2	O15034	1052 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	SLCO1A2	P46721	670 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	FMNL3	Q8IVF7	1028 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	MAPKAPK5	Q8IW41	473 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	TEX11	Q8IYF3	940 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	KCNV2	Q8TDN2	545 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	GSDMA	Q96QA5	445 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	SENP2	Q9HC62	589 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	MTUS1	Q9ULD2	1270 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	ODF2L	Q9ULJ1	636 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	UST	Q9Y2C2	406 aa		5.49	□□□□□ -1.53
SYNE2-223	ENST00000557005	PPP1R2	P41236	205 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	PRCP	P42785	496 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	IFNAR2	P48551	515 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	ZBTB16	Q05516	673 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	PPP2R5A	Q15172	486 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	USH1G	Q495M9	461 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	KRT25	Q7Z3Z0	450 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	TC2N	Q8N9U0	490 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	NAP1L3	Q99457	506 aa	Predicted RBP	5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	PPP1R12C	Q9BZL4	782 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	FBXO2	Q9UK22	296 aa	Predicted RBP	5.48	□□□□□ -1.53

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