RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 FAM217BQ9NTX9 383 aaPredicted RBP20.3■□□□□ 0.84
SHMT2-225ENST00000556798 RBM28Q9NW13 759 aaKnown RBP20.3■□□□□ 0.84
SHMT2-225ENST00000556798 NFIBO00712 420 aa20.29■□□□□ 0.84
SHMT2-225ENST00000556798 ZBTB5O15062 677 aa20.29■□□□□ 0.84
SHMT2-225ENST00000556798 COBLO75128 1261 aa20.29■□□□□ 0.84
SHMT2-225ENST00000556798 PDIA3P30101 505 aaKnown RBP20.29■□□□□ 0.84
SHMT2-225ENST00000556798 RCAN1P53805 252 aa20.29■□□□□ 0.84
SHMT2-225ENST00000556798 AK2P54819 239 aa20.29■□□□□ 0.84
SHMT2-225ENST00000556798 EVCP57679 992 aa20.29■□□□□ 0.84
SHMT2-225ENST00000556798 CCL14Q16627 93 aa20.29■□□□□ 0.84
SHMT2-225ENST00000556798 SLC9C1Q4G0N8 1177 aa20.29■□□□□ 0.84
SHMT2-225ENST00000556798 DPP9Q86TI2 863 aa20.29■□□□□ 0.84
SHMT2-225ENST00000556798 FBXO11Q86XK2 927 aa20.29■□□□□ 0.84
SHMT2-225ENST00000556798 ABRAQ8N0Z2 381 aa20.29■□□□□ 0.84
SHMT2-225ENST00000556798 ANKRD35Q8N283 1001 aa20.29■□□□□ 0.84
SHMT2-225ENST00000556798 FBXO40Q9UH90 709 aa20.29■□□□□ 0.84
SHMT2-225ENST00000556798 NID2Q14112 1375 aa20.29■□□□□ 0.84
SHMT2-225ENST00000556798 CNTNAP5Q8WYK1 1306 aa20.28■□□□□ 0.84
SHMT2-225ENST00000556798 hCG_1642624A0A1W2PR95 340 aa20.28■□□□□ 0.84
SHMT2-225ENST00000556798 GRK4P32298 578 aa20.28■□□□□ 0.84
SHMT2-225ENST00000556798 ADD1P35611 737 aaKnown RBP20.28■□□□□ 0.84
SHMT2-225ENST00000556798 CCT2P78371 535 aaKnown RBP20.28■□□□□ 0.84
SHMT2-225ENST00000556798 SLAIN1Q8ND83 568 aa20.28■□□□□ 0.84
SHMT2-225ENST00000556798 TRIB2Q92519 343 aa20.28■□□□□ 0.84
SHMT2-225ENST00000556798 NCOA5Q9HCD5 579 aaKnown RBP20.28■□□□□ 0.84
SHMT2-225ENST00000556798 A1CFQ9NQ94 594 aaKnown RBP20.28■□□□□ 0.84
SHMT2-225ENST00000556798 MYCP01106 439 aaPredicted RBP20.27■□□□□ 0.84
SHMT2-225ENST00000556798 STK3Q13188 491 aa20.27■□□□□ 0.84
SHMT2-225ENST00000556798 NSMFQ6X4W1 530 aa20.27■□□□□ 0.84
SHMT2-225ENST00000556798 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.27■□□□□ 0.84
SHMT2-225ENST00000556798 CLEC4DQ8WXI8 215 aa20.27■□□□□ 0.84
SHMT2-225ENST00000556798 RRP36Q96EU6 259 aaKnown RBP20.27■□□□□ 0.84
SHMT2-225ENST00000556798 DDX11Q96FC9 970 aa20.27■□□□□ 0.84
SHMT2-225ENST00000556798 ABHD8Q96I13 439 aa20.27■□□□□ 0.84
SHMT2-225ENST00000556798 TBC1D32Q96NH3 1257 aa20.27■□□□□ 0.84
SHMT2-225ENST00000556798 AMNQ9BXJ7 453 aa20.27■□□□□ 0.84
SHMT2-225ENST00000556798 FLRT1Q9NZU1 646 aa20.27■□□□□ 0.84
SHMT2-225ENST00000556798 PNMA2Q9UL42 364 aa20.27■□□□□ 0.84
SHMT2-225ENST00000556798 ABCB11O95342 1321 aa20.27■□□□□ 0.83
SHMT2-225ENST00000556798 PNMA6FA0A0J9YX94 578 aa20.26■□□□□ 0.83
SHMT2-225ENST00000556798 HOXC6P09630 235 aa20.26■□□□□ 0.83
SHMT2-225ENST00000556798 XRCC5P13010 732 aaKnown RBP20.26■□□□□ 0.83
SHMT2-225ENST00000556798 SMARCA1P28370 1054 aa20.26■□□□□ 0.83
SHMT2-225ENST00000556798 PXYLP1Q8TE99 480 aa20.26■□□□□ 0.83
SHMT2-225ENST00000556798 ALDH8A1Q9H2A2 487 aaPredicted RBP20.26■□□□□ 0.83
SHMT2-225ENST00000556798 BIN2Q9UBW5 565 aaPredicted RBP20.26■□□□□ 0.83
SHMT2-225ENST00000556798 SEC63Q9UGP8 760 aaKnown RBP20.26■□□□□ 0.83
SHMT2-225ENST00000556798 TPCN1Q9ULQ1 816 aa20.26■□□□□ 0.83
SHMT2-225ENST00000556798 PPFIA3O75145 1194 aa20.25■□□□□ 0.83
SHMT2-225ENST00000556798 INHAP05111 366 aa20.25■□□□□ 0.83
SHMT2-225ENST00000556798 FUT2Q10981 343 aa20.25■□□□□ 0.83
SHMT2-225ENST00000556798 TRIM32Q13049 653 aa20.25■□□□□ 0.83
SHMT2-225ENST00000556798 SLC30A10Q6XR72 485 aa20.25■□□□□ 0.83
SHMT2-225ENST00000556798 ZNF274Q96GC6 653 aaPredicted RBP20.25■□□□□ 0.83
SHMT2-225ENST00000556798 PCDHA1Q9Y5I3 950 aa20.25■□□□□ 0.83
SHMT2-225ENST00000556798 LRRC37A2A6NM11 1700 aa20.24■□□□□ 0.83
SHMT2-225ENST00000556798 DNAJC25-GNG10A0A024R161 153 aa20.24■□□□□ 0.83
SHMT2-225ENST00000556798 CCDC196A0A1B0GTZ2 297 aa20.24■□□□□ 0.83
SHMT2-225ENST00000556798 PTPDC1A2A3K4 754 aa20.24■□□□□ 0.83
SHMT2-225ENST00000556798 HMGCRP04035 888 aa20.24■□□□□ 0.83
SHMT2-225ENST00000556798 CNTN2Q02246 1040 aa20.24■□□□□ 0.83
SHMT2-225ENST00000556798 BAATQ14032 418 aaPredicted RBP20.24■□□□□ 0.83
SHMT2-225ENST00000556798 PPP2R5BQ15173 497 aa20.24■□□□□ 0.83
SHMT2-225ENST00000556798 ANKRD1Q15327 319 aa20.24■□□□□ 0.83
SHMT2-225ENST00000556798 ZNF792Q3KQV3 632 aa20.24■□□□□ 0.83
SHMT2-225ENST00000556798 ARMC5Q96C12 935 aa20.24■□□□□ 0.83
SHMT2-225ENST00000556798 MAML3Q96JK9 1138 aa20.24■□□□□ 0.83
SHMT2-225ENST00000556798 PURBQ96QR8 312 aaKnown RBP20.24■□□□□ 0.83
SHMT2-225ENST00000556798 SLC5A4Q9NY91 659 aa20.24■□□□□ 0.83
SHMT2-225ENST00000556798 CYP39A1Q9NYL5 469 aa20.24■□□□□ 0.83
SHMT2-225ENST00000556798 PFASO15067 1338 aa20.24■□□□□ 0.83
SHMT2-225ENST00000556798 FRMPD3Q5JV73 1810 aa20.23■□□□□ 0.83
SHMT2-225ENST00000556798 POTEB2H3BUK9 544 aa20.23■□□□□ 0.83
SHMT2-225ENST00000556798 LARGE1O95461 756 aa20.23■□□□□ 0.83
SHMT2-225ENST00000556798 RNF207Q6ZRF8 634 aa20.23■□□□□ 0.83
SHMT2-225ENST00000556798 TBC1D5Q92609 795 aa20.23■□□□□ 0.83
SHMT2-225ENST00000556798 ZNF333Q96JL9 665 aa20.23■□□□□ 0.83
SHMT2-225ENST00000556798 FGD4Q96M96 766 aa20.23■□□□□ 0.83
SHMT2-225ENST00000556798 MRPL11Q9Y3B7 192 aaKnown RBP20.23■□□□□ 0.83
SHMT2-225ENST00000556798 OPLAHO14841 1288 aa20.22■□□□□ 0.83
SHMT2-225ENST00000556798 CALML3P27482 149 aa20.22■□□□□ 0.83
SHMT2-225ENST00000556798 RABEP1Q15276 862 aa20.22■□□□□ 0.83
SHMT2-225ENST00000556798 NTRK3Q16288 839 aa20.22■□□□□ 0.83
SHMT2-225ENST00000556798 FAM133AQ8N9E0 248 aa20.22■□□□□ 0.83
SHMT2-225ENST00000556798 GPKOWQ92917 476 aaPredicted RBP eCLIP20.22■□□□□ 0.83
SHMT2-225ENST00000556798 PHKBQ93100 1093 aa20.22■□□□□ 0.83
SHMT2-225ENST00000556798 SLKQ9H2G2 1235 aaPredicted RBP20.22■□□□□ 0.83
SHMT2-225ENST00000556798 V9GY48 417 aaPredicted RBP20.22■□□□□ 0.83
SHMT2-225ENST00000556798 CYP2C19P33261 490 aa20.21■□□□□ 0.83
SHMT2-225ENST00000556798 RPS6P62753 249 aaKnown RBP20.21■□□□□ 0.83
SHMT2-225ENST00000556798 SCRN1Q12765 414 aa20.21■□□□□ 0.83
SHMT2-225ENST00000556798 MTFR1Q15390 333 aa20.21■□□□□ 0.83
SHMT2-225ENST00000556798 ME3Q16798 604 aa20.21■□□□□ 0.83
SHMT2-225ENST00000556798 HEATR3Q7Z4Q2 680 aa20.21■□□□□ 0.83
SHMT2-225ENST00000556798 TRMT44Q8IYL2 757 aaKnown RBP20.21■□□□□ 0.83
SHMT2-225ENST00000556798 ASTN1O14525 1302 aa20.21■□□□□ 0.83
SHMT2-225ENST00000556798 SOWAHBA6NEL2 793 aa20.2■□□□□ 0.82
SHMT2-225ENST00000556798 PFKFB2O60825 505 aa20.2■□□□□ 0.82
SHMT2-225ENST00000556798 DTNBO60941 627 aa20.2■□□□□ 0.82
SHMT2-225ENST00000556798 CFBP00751 764 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms