RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 CALM3P0DP25 149 aa16.53■□□□□ 0.24
SHMT2-217ENST00000555116 RXRAP19793 462 aa16.53■□□□□ 0.24
SHMT2-217ENST00000555116 CACNB2Q08289 660 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-217ENST00000555116 Q6ZUG5 572 aa16.53■□□□□ 0.24
SHMT2-217ENST00000555116 ANKRD35Q8N283 1001 aa16.53■□□□□ 0.24
SHMT2-217ENST00000555116 FBXL16Q8N461 479 aa16.53■□□□□ 0.24
SHMT2-217ENST00000555116 CTCFLQ8NI51 663 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-217ENST00000555116 TMEM106CQ9BVX2 250 aa16.53■□□□□ 0.24
SHMT2-217ENST00000555116 AGXT2Q9BYV1 514 aa16.53■□□□□ 0.24
SHMT2-217ENST00000555116 PRKAR2AP13861 404 aaKnown RBP16.52■□□□□ 0.24
SHMT2-217ENST00000555116 KIF5BP33176 963 aa16.52■□□□□ 0.24
SHMT2-217ENST00000555116 MFSD14CQ5VZR4 134 aa16.52■□□□□ 0.24
SHMT2-217ENST00000555116 RUFY3Q7L099 469 aa16.52■□□□□ 0.24
SHMT2-217ENST00000555116 FGD4Q96M96 766 aa16.52■□□□□ 0.24
SHMT2-217ENST00000555116 FRMPD3Q5JV73 1810 aa16.52■□□□□ 0.24
SHMT2-217ENST00000555116 NFIBO00712 420 aa16.52■□□□□ 0.23
SHMT2-217ENST00000555116 CYP2C19P33261 490 aa16.52■□□□□ 0.23
SHMT2-217ENST00000555116 MICU3Q86XE3 530 aa16.52■□□□□ 0.23
SHMT2-217ENST00000555116 IL17RAQ96F46 866 aa16.52■□□□□ 0.23
SHMT2-217ENST00000555116 RNF208Q9H0X6 261 aa16.52■□□□□ 0.23
SHMT2-217ENST00000555116 RPTORQ8N122 1335 aa16.52■□□□□ 0.23
SHMT2-217ENST00000555116 ZBTB5O15062 677 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 PPP1R11O60927 126 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-217ENST00000555116 PLEKHA8P1O95397 391 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 SMARCA1P28370 1054 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 GNAQP50148 359 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 ANAPC15P60006 121 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 USH1GQ495M9 461 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 SYNE3Q6ZMZ3 975 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 FBXO11Q86XK2 927 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 CCDC144CPQ8IYA2 1237 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 FAM133AQ8N9E0 248 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 FANCBQ8NB91 859 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 PIGSQ96S52 555 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 LZTS2Q9BRK4 669 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 SPZ1Q9BXG8 430 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.51■□□□□ 0.234e-7■■□□□ 13.4
SHMT2-217ENST00000555116 PAK6Q9NQU5 681 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-217ENST00000555116 CYP39A1Q9NYL5 469 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 PFASO15067 1338 aa16.51■□□□□ 0.23
SHMT2-217ENST00000555116 KLF18A0A0U1RQI7 1052 aa16.5■□□□□ 0.23
SHMT2-217ENST00000555116 GJB1P08034 283 aa16.5■□□□□ 0.23
SHMT2-217ENST00000555116 CNTN2Q02246 1040 aa16.5■□□□□ 0.23
SHMT2-217ENST00000555116 APOBRQ0VD83 1088 aa16.5■□□□□ 0.23
SHMT2-217ENST00000555116 SRBD1Q8N5C6 995 aaKnown RBP16.5■□□□□ 0.23
SHMT2-217ENST00000555116 BRF1Q92994 677 aa16.5■□□□□ 0.23
SHMT2-217ENST00000555116 HMX1Q9NP08 348 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-217ENST00000555116 CYP46A1Q9Y6A2 500 aa16.5■□□□□ 0.23
SHMT2-217ENST00000555116 ABCB11O95342 1321 aa16.5■□□□□ 0.23
SHMT2-217ENST00000555116 POTEB2H3BUK9 544 aa16.5■□□□□ 0.23
SHMT2-217ENST00000555116 ZBTB43O43298 467 aa16.5■□□□□ 0.23
SHMT2-217ENST00000555116 CCND3P30281 292 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-217ENST00000555116 FGD1P98174 961 aa16.5■□□□□ 0.23
SHMT2-217ENST00000555116 NSMFQ6X4W1 530 aa16.5■□□□□ 0.23
SHMT2-217ENST00000555116 ZNF467Q7Z7K2 595 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-217ENST00000555116 TRPV1Q8NER1 839 aa16.5■□□□□ 0.23
SHMT2-217ENST00000555116 IPO9Q96P70 1041 aaKnown RBP16.5■□□□□ 0.23
SHMT2-217ENST00000555116 TINF2Q9BSI4 451 aa16.5■□□□□ 0.23
SHMT2-217ENST00000555116 AMNQ9BXJ7 453 aa16.5■□□□□ 0.23
SHMT2-217ENST00000555116 UPF3BQ9BZI7 483 aaKnown RBP16.5■□□□□ 0.23
SHMT2-217ENST00000555116 SOWAHBA6NEL2 793 aa16.49■□□□□ 0.23
SHMT2-217ENST00000555116 EN2P19622 333 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-217ENST00000555116 RCAN1P53805 252 aa16.49■□□□□ 0.23
SHMT2-217ENST00000555116 BAATQ14032 418 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-217ENST00000555116 MAMDC4Q6UXC1 1216 aa16.49■□□□□ 0.23
SHMT2-217ENST00000555116 TMTC3Q6ZXV5 915 aa16.49■□□□□ 0.23
SHMT2-217ENST00000555116 HOMER1Q86YM7 354 aa16.49■□□□□ 0.23
SHMT2-217ENST00000555116 MSL3Q8N5Y2 521 aaKnown RBP16.49■□□□□ 0.23
SHMT2-217ENST00000555116 FAM217BQ9NTX9 383 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-217ENST00000555116 PNMA6FA0A0J9YX94 578 aa16.48■□□□□ 0.23
SHMT2-217ENST00000555116 CYBAP13498 195 aa16.48■□□□□ 0.23
SHMT2-217ENST00000555116 GJA8P48165 433 aa16.48■□□□□ 0.23
SHMT2-217ENST00000555116 RGS19P49795 217 aa16.48■□□□□ 0.23
SHMT2-217ENST00000555116 EVCP57679 992 aa16.48■□□□□ 0.23
SHMT2-217ENST00000555116 TOB2Q14106 344 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-217ENST00000555116 SLC30A10Q6XR72 485 aa16.48■□□□□ 0.23
SHMT2-217ENST00000555116 CMTR1Q8N1G2 835 aaKnown RBP16.48■□□□□ 0.23
SHMT2-217ENST00000555116 RGS22Q8NE09 1264 aa16.48■□□□□ 0.23
SHMT2-217ENST00000555116 SHISA4Q96DD7 197 aa16.48■□□□□ 0.23
SHMT2-217ENST00000555116 DEFB118Q96PH6 123 aa16.48■□□□□ 0.23
SHMT2-217ENST00000555116 ASTN1O14525 1302 aa16.48■□□□□ 0.23
SHMT2-217ENST00000555116 LRRC37A2A6NM11 1700 aa16.48■□□□□ 0.23
SHMT2-217ENST00000555116 RTN1Q16799 776 aa16.48■□□□□ 0.23
SHMT2-217ENST00000555116 PRAMEF19Q5SWL8 479 aa16.48■□□□□ 0.23
SHMT2-217ENST00000555116 U2AF1L4Q8WU68 220 aaKnown RBP16.48■□□□□ 0.23
SHMT2-217ENST00000555116 PURBQ96QR8 312 aaKnown RBP16.48■□□□□ 0.23
SHMT2-217ENST00000555116 RBM28Q9NW13 759 aaKnown RBP16.48■□□□□ 0.23
SHMT2-217ENST00000555116 MRPL11Q9Y3B7 192 aaKnown RBP16.48■□□□□ 0.23
SHMT2-217ENST00000555116 NID2Q14112 1375 aa16.48■□□□□ 0.23
SHMT2-217ENST00000555116 SYNGAP1Q96PV0 1343 aa16.47■□□□□ 0.23
SHMT2-217ENST00000555116 GOLGA8AA7E2F4 631 aa16.47■□□□□ 0.23
SHMT2-217ENST00000555116 GOLGA8BA8MQT2 603 aa16.47■□□□□ 0.23
SHMT2-217ENST00000555116 OPLAHO14841 1288 aa16.47■□□□□ 0.23
SHMT2-217ENST00000555116 SGPL1O95470 568 aa16.47■□□□□ 0.23
SHMT2-217ENST00000555116 SNAI1O95863 264 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-217ENST00000555116 CDC27P30260 824 aa16.47■□□□□ 0.23
SHMT2-217ENST00000555116 RPS6P62753 249 aaKnown RBP16.47■□□□□ 0.23
SHMT2-217ENST00000555116 FUT2Q10981 343 aa16.47■□□□□ 0.23
SHMT2-217ENST00000555116 RNF207Q6ZRF8 634 aa16.47■□□□□ 0.23
SHMT2-217ENST00000555116 PIBF1Q8WXW3 757 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms