RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 CAPNS2Q96L46 248 aa16.65■□□□□ 0.26
SHMT2-210ENST00000553950 RIC8AQ9NPQ8 531 aa16.65■□□□□ 0.26
SHMT2-210ENST00000553950 MAP3K20Q9NYL2 800 aaKnown RBP16.65■□□□□ 0.26
SHMT2-210ENST00000553950 ZNF214Q9UL59 606 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-210ENST00000553950 PLXNB2O15031 1838 aa16.64■□□□□ 0.25
SHMT2-210ENST00000553950 SMCO2A6NFE2 343 aa16.64■□□□□ 0.25
SHMT2-210ENST00000553950 PPP1R11O60927 126 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-210ENST00000553950 SLC25A27O95847 323 aa16.64■□□□□ 0.25
SHMT2-210ENST00000553950 F13A1P00488 732 aa16.64■□□□□ 0.25
SHMT2-210ENST00000553950 AP3B2Q13367 1082 aa16.64■□□□□ 0.25
SHMT2-210ENST00000553950 MCTP1Q6DN14 999 aa16.64■□□□□ 0.25
SHMT2-210ENST00000553950 SNRNP48Q6IEG0 339 aaKnown RBP16.64■□□□□ 0.25
SHMT2-210ENST00000553950 IFNL1Q8IU54 200 aa16.64■□□□□ 0.25
SHMT2-210ENST00000553950 BLIDQ8IZY5 108 aa16.64■□□□□ 0.25
SHMT2-210ENST00000553950 REXO1Q8N1G1 1221 aaKnown RBP16.64■□□□□ 0.25
SHMT2-210ENST00000553950 EHMT1Q9H9B1 1298 aa16.64■□□□□ 0.25
SHMT2-210ENST00000553950 ZNF536O15090 1300 aa16.64■□□□□ 0.25
SHMT2-210ENST00000553950 SMCHD1A6NHR9 2005 aa16.63■□□□□ 0.25
SHMT2-210ENST00000553950 ZNF236Q9UL36 1845 aa16.63■□□□□ 0.25
SHMT2-210ENST00000553950 TM4SF4P48230 202 aa16.63■□□□□ 0.25
SHMT2-210ENST00000553950 GUCY1B3Q02153 619 aa16.63■□□□□ 0.25
SHMT2-210ENST00000553950 KIF23Q02241 960 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-210ENST00000553950 CYP4F22Q6NT55 531 aa16.63■□□□□ 0.25
SHMT2-210ENST00000553950 KRT25Q7Z3Z0 450 aa16.63■□□□□ 0.25
SHMT2-210ENST00000553950 CPXCR1Q8N123 301 aa16.63■□□□□ 0.25
SHMT2-210ENST00000553950 FAM43AQ8N2R8 423 aa16.63■□□□□ 0.25
SHMT2-210ENST00000553950 CHST13Q8NET6 341 aa16.63■□□□□ 0.25
SHMT2-210ENST00000553950 COA7Q96BR5 231 aa16.63■□□□□ 0.25
SHMT2-210ENST00000553950 P2RX7Q99572 595 aaKnown RBP16.63■□□□□ 0.25
SHMT2-210ENST00000553950 ACAD9Q9H845 621 aa16.63■□□□□ 0.25
SHMT2-210ENST00000553950 PSTPIP2Q9H939 334 aa16.63■□□□□ 0.25
SHMT2-210ENST00000553950 RAVER2Q9HCJ3 691 aaKnown RBP16.63■□□□□ 0.25
SHMT2-210ENST00000553950 PIK3CDO00329 1044 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 FOSP01100 380 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-210ENST00000553950 ALAS1P13196 640 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 U2AF2P26368 475 aaKnown RBP eCLIP16.62■□□□□ 0.25
SHMT2-210ENST00000553950 MAP2K2P36507 400 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 STAT3P40763 770 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 GHRHRQ02643 423 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 PLS1Q14651 629 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 TMEM132BQ14DG7 1078 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 TAF1CQ15572 869 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-210ENST00000553950 FAM110CQ1W6H9 321 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 RIOX2Q8IUF8 465 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 NOSTRINQ8IVI9 506 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 SHCBP1Q8NEM2 672 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 PAGR1Q9BTK6 254 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 SPATC1LQ9H0A9 340 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 ZFYVE28Q9HCC9 887 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 RNF146Q9NTX7 359 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 MORF4L1Q9UBU8 362 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 NOL7Q9UMY1 257 aaKnown RBP16.62■□□□□ 0.25
SHMT2-210ENST00000553950 KCNJ14Q9UNX9 436 aa16.62■□□□□ 0.25
SHMT2-210ENST00000553950 MYH7BA7E2Y1 1941 aa16.61■□□□□ 0.25
SHMT2-210ENST00000553950 CCDC194A0A1B0GVG4 234 aa16.61■□□□□ 0.25
SHMT2-210ENST00000553950 DTNBO60941 627 aa16.61■□□□□ 0.25
SHMT2-210ENST00000553950 SNAP25P60880 206 aa16.61■□□□□ 0.25
SHMT2-210ENST00000553950 ERVK-9P63128 1117 aa16.61■□□□□ 0.25
SHMT2-210ENST00000553950 ERVK-24P63145 666 aa16.61■□□□□ 0.25
SHMT2-210ENST00000553950 RESTQ13127 1097 aa16.61■□□□□ 0.25
SHMT2-210ENST00000553950 GRM1Q13255 1194 aa16.61■□□□□ 0.25
SHMT2-210ENST00000553950 ATL3Q6DD88 541 aa16.61■□□□□ 0.25
SHMT2-210ENST00000553950 TYW1BQ6NUM6 668 aa16.61■□□□□ 0.25
SHMT2-210ENST00000553950 AGBL1Q96MI9 1066 aa16.61■□□□□ 0.25
SHMT2-210ENST00000553950 MROH8Q9H579 483 aa16.61■□□□□ 0.25
SHMT2-210ENST00000553950 PFASO15067 1338 aa16.61■□□□□ 0.25
SHMT2-210ENST00000553950 TCHHQ07283 1943 aa16.6■□□□□ 0.25
SHMT2-210ENST00000553950 SPDYE3A6NKU9 549 aa16.6■□□□□ 0.25
SHMT2-210ENST00000553950 GCOM1H8Y6P7 765 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-210ENST00000553950 IGF2BP3O00425 579 aaKnown RBP eCLIP16.6■□□□□ 0.25
SHMT2-210ENST00000553950 POLR2MP0CAP2 368 aa16.6■□□□□ 0.25
SHMT2-210ENST00000553950 TRAPPC10P48553 1259 aa16.6■□□□□ 0.25
SHMT2-210ENST00000553950 PKP1Q13835 747 aa16.6■□□□□ 0.25
SHMT2-210ENST00000553950 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.6■□□□□ 0.25
SHMT2-210ENST00000553950 GPRC5AQ8NFJ5 357 aa16.6■□□□□ 0.25
SHMT2-210ENST00000553950 TRERF1Q96PN7 1200 aa16.6■□□□□ 0.25
SHMT2-210ENST00000553950 NAP1L4Q99733 375 aaKnown RBP16.6■□□□□ 0.25
SHMT2-210ENST00000553950 PTPN18Q99952 460 aa16.6■□□□□ 0.25
SHMT2-210ENST00000553950 MGAMO43451 1857 aa16.6■□□□□ 0.25
SHMT2-210ENST00000553950 PLXNA1Q9UIW2 1896 aa16.59■□□□□ 0.25
SHMT2-210ENST00000553950 CYP2C8P10632 490 aa16.59■□□□□ 0.25
SHMT2-210ENST00000553950 NONOQ15233 471 aaKnown RBP eCLIP16.59■□□□□ 0.25
SHMT2-210ENST00000553950 NPY5RQ15761 445 aa16.59■□□□□ 0.25
SHMT2-210ENST00000553950 RILPL1Q5EBL4 403 aa16.59■□□□□ 0.25
SHMT2-210ENST00000553950 CCAR1Q8IX12 1150 aaKnown RBP16.59■□□□□ 0.25
SHMT2-210ENST00000553950 ZNF396Q96N95 335 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-210ENST00000553950 GBP4Q96PP9 640 aa16.59■□□□□ 0.25
SHMT2-210ENST00000553950 GJB4Q9NTQ9 266 aa16.59■□□□□ 0.25
SHMT2-210ENST00000553950 BTBD7Q9P203 1132 aa16.59■□□□□ 0.25
SHMT2-210ENST00000553950 ADGRA2Q96PE1 1338 aa16.59■□□□□ 0.25
SHMT2-210ENST00000553950 BTBD18B2RXH4 712 aa16.58■□□□□ 0.24
SHMT2-210ENST00000553950 CFBP00751 764 aa16.58■□□□□ 0.24
SHMT2-210ENST00000553950 HSPA6P17066 643 aa16.58■□□□□ 0.24
SHMT2-210ENST00000553950 CLK2P49760 499 aaKnown RBP16.58■□□□□ 0.24
SHMT2-210ENST00000553950 HSD17B4P51659 736 aa16.58■□□□□ 0.24
SHMT2-210ENST00000553950 ORC2Q13416 577 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-210ENST00000553950 CSPP1Q1MSJ5 1256 aa16.58■□□□□ 0.24
SHMT2-210ENST00000553950 FERMT3Q86UX7 667 aa16.58■□□□□ 0.24
SHMT2-210ENST00000553950 SHISA4Q96DD7 197 aa16.58■□□□□ 0.24
SHMT2-210ENST00000553950 HOMER2Q9NSB8 354 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms