RNA–Protein interactions for RNA: ENST00000553491.5

ATXN3-220, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 857 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-220ENST00000553491 ANKRD26Q9UPS8 1709 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 CGNL1Q0VF96 1302 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 CAMTA1Q9Y6Y1 1673 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 FAM221AA4D161 298 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 RBAK-RBAKDNI3L0D1 243 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 IGF2BP3O00425 579 aaKnown RBP eCLIP6.3□□□□□ -1.4
ATXN3-220ENST00000553491 SLITRK5O94991 958 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 DNAJA1P31689 397 aaKnown RBP6.3□□□□□ -1.4
ATXN3-220ENST00000553491 GRK4P32298 578 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 SF3A1Q15459 793 aaKnown RBP6.3□□□□□ -1.4
ATXN3-220ENST00000553491 SNAP47Q5SQN1 464 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 CC2D1BQ5T0F9 858 aaKnown RBP6.3□□□□□ -1.4
ATXN3-220ENST00000553491 BNC2Q6ZN30 1099 aaPredicted RBP6.3□□□□□ -1.4
ATXN3-220ENST00000553491 CDC37L1Q7L3B6 337 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 CCDC84Q86UT8 332 aaPredicted RBP6.3□□□□□ -1.4
ATXN3-220ENST00000553491 ARHGEF25Q86VW2 580 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 RASGRP4Q8TDF6 673 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 FBXL18Q96ME1 805 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 NT5C1AQ9BXI3 368 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 MIR1-1HGQ9H1L0 117 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 PICK1Q9NRD5 415 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 UBP1Q9NZI7 540 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 ANGEL1Q9UNK9 670 aaKnown RBP6.3□□□□□ -1.4
ATXN3-220ENST00000553491 ATRNO75882 1429 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 NSD3Q9BZ95 1437 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 SLIT2O94813 1529 aa6.3□□□□□ -1.4
ATXN3-220ENST00000553491 USP19O94966 1318 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 KIF7Q2M1P5 1343 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 SPATA31A5Q5VU36 1347 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 SPATA31A7Q8IWB4 1347 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 F13A1P00488 732 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 CEACAM5P06731 702 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 GLI3P10071 1580 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 ATF4P18848 351 aaPredicted RBP6.29□□□□□ -1.4
ATXN3-220ENST00000553491 CRKP46108 304 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 RPL6Q02878 288 aaKnown RBP6.29□□□□□ -1.4
ATXN3-220ENST00000553491 ARID5AQ03989 594 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 BNIP3Q12983 259 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 ZNF574Q6ZN55 896 aaPredicted RBP6.29□□□□□ -1.4
ATXN3-220ENST00000553491 FAM196AQ6ZSG2 479 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 SSH2Q76I76 1423 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 KRT27Q7Z3Y8 459 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 TCP11L2Q8N4U5 519 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 FBXO27Q8NI29 283 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 RIN3Q8TB24 985 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 JARID2Q92833 1246 aaPredicted RBP6.29□□□□□ -1.4
ATXN3-220ENST00000553491 FOXQ1Q9C009 403 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 TANGO6Q9C0B7 1094 aa6.29□□□□□ -1.4
ATXN3-220ENST00000553491 SPATA31A1Q5TZJ5 1347 aa6.28□□□□□ -1.4
ATXN3-220ENST00000553491 SBF2Q86WG5 1849 aa6.28□□□□□ -1.4
ATXN3-220ENST00000553491 EXOC5O00471 708 aa6.28□□□□□ -1.4
ATXN3-220ENST00000553491 CILPO75339 1184 aa6.28□□□□□ -1.4
ATXN3-220ENST00000553491 TAL1P17542 331 aaPredicted RBP6.28□□□□□ -1.4
ATXN3-220ENST00000553491 LMNB1P20700 586 aa6.28□□□□□ -1.4
ATXN3-220ENST00000553491 IFI16Q16666 785 aaKnown RBP6.28□□□□□ -1.4
ATXN3-220ENST00000553491 VPS37DQ86XT2 251 aa6.28□□□□□ -1.4
ATXN3-220ENST00000553491 HID1Q8IV36 788 aa6.28□□□□□ -1.4
ATXN3-220ENST00000553491 GATAD2BQ8WXI9 593 aa6.28□□□□□ -1.4
ATXN3-220ENST00000553491 IP6K1Q92551 441 aa6.28□□□□□ -1.4
ATXN3-220ENST00000553491 MISP3Q96FF7 219 aa6.28□□□□□ -1.4
ATXN3-220ENST00000553491 PPP1R1BQ9UD71 204 aaPredicted RBP6.28□□□□□ -1.4
ATXN3-220ENST00000553491 TJP2Q9UDY2 1190 aa6.28□□□□□ -1.4
ATXN3-220ENST00000553491 VAV3Q9UKW4 847 aa6.28□□□□□ -1.4
ATXN3-220ENST00000553491 MAP3K19Q56UN5 1328 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 VIRMAQ69YN4 1812 aaKnown RBP6.27□□□□□ -1.41
ATXN3-220ENST00000553491 WNK3Q9BYP7 1800 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 RGS12O14924 1447 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 SLIT3O75094 1523 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 CST3P01034 146 aaPredicted RBP6.27□□□□□ -1.41
ATXN3-220ENST00000553491 CD8BP10966 210 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 IRAK1P51617 712 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 ETF1P62495 437 aaKnown RBP6.27□□□□□ -1.41
ATXN3-220ENST00000553491 PRKCQQ04759 706 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 DDX10Q13206 875 aaKnown RBP6.27□□□□□ -1.41
ATXN3-220ENST00000553491 DDB1Q16531 1140 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 NKPD1Q17RQ9 610 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 MCF2L2Q86YR7 1114 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 SPACA3Q8IXA5 215 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 MRPL41Q8IXM3 137 aaKnown RBP6.27□□□□□ -1.41
ATXN3-220ENST00000553491 USHBP1Q8N6Y0 703 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 MFSD2AQ8NA29 543 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 FLCNQ8NFG4 579 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 GINM1Q9NU53 330 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 GTF2IRD1Q9UHL9 959 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 SLC5A6Q9Y289 635 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 CPDO75976 1380 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 AATKQ6ZMQ8 1374 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 CCDC7Q96M83 1385 aa6.27□□□□□ -1.41
ATXN3-220ENST00000553491 USP54Q70EL1 1684 aa6.26□□□□□ -1.41
ATXN3-220ENST00000553491 LMO7Q8WWI1 1683 aa6.26□□□□□ -1.41
ATXN3-220ENST00000553491 WASHC2AQ641Q2 1341 aa6.26□□□□□ -1.41
ATXN3-220ENST00000553491 WDR17Q8IZU2 1322 aa6.26□□□□□ -1.41
ATXN3-220ENST00000553491 TLR3O15455 904 aaKnown RBP6.26□□□□□ -1.41
ATXN3-220ENST00000553491 FGRP09769 529 aa6.26□□□□□ -1.41
ATXN3-220ENST00000553491 HOXC9P31274 260 aa6.26□□□□□ -1.41
ATXN3-220ENST00000553491 CD96P40200 585 aa6.26□□□□□ -1.41
ATXN3-220ENST00000553491 APOBRQ0VD83 1088 aa6.26□□□□□ -1.41
ATXN3-220ENST00000553491 HSP90AB2PQ58FF8 381 aa6.26□□□□□ -1.41
ATXN3-220ENST00000553491 PRAMEF13Q5VWM6 474 aa6.26□□□□□ -1.41
ATXN3-220ENST00000553491 C22orf34Q6ZV56 151 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms