RNA–Protein interactions for RNA: ENST00000547063.5

TRAFD1-203, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 3

Gene TRAFD1, Length 867 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-203ENST00000547063 SMCR8Q8TEV9 937 aaPredicted RBP18.18■□□□□ 0.5
TRAFD1-203ENST00000547063 CUL5Q93034 780 aa18.18■□□□□ 0.5
TRAFD1-203ENST00000547063 TEX13BQ9BXU2 312 aa18.18■□□□□ 0.5
TRAFD1-203ENST00000547063 PSTPIP2Q9H939 334 aa18.18■□□□□ 0.5
TRAFD1-203ENST00000547063 RIC8AQ9NPQ8 531 aa18.18■□□□□ 0.5
TRAFD1-203ENST00000547063 RABGAP1Q9Y3P9 1069 aa18.18■□□□□ 0.5
TRAFD1-203ENST00000547063 U2AF2P26368 475 aaKnown RBP eCLIP18.17■□□□□ 0.5
TRAFD1-203ENST00000547063 KIF23Q02241 960 aaPredicted RBP18.17■□□□□ 0.5
TRAFD1-203ENST00000547063 MCF2L2Q86YR7 1114 aa18.17■□□□□ 0.5
TRAFD1-203ENST00000547063 CPXCR1Q8N123 301 aa18.17■□□□□ 0.5
TRAFD1-203ENST00000547063 REPS2Q8NFH8 660 aa18.17■□□□□ 0.5
TRAFD1-203ENST00000547063 RAVER2Q9HCJ3 691 aaKnown RBP18.17■□□□□ 0.5
TRAFD1-203ENST00000547063 GJB4Q9NTQ9 266 aa18.17■□□□□ 0.5
TRAFD1-203ENST00000547063 ZDHHC9Q9Y397 364 aa18.17■□□□□ 0.5
TRAFD1-203ENST00000547063 A0A0G2JMZ2 1700 aa18.17■□□□□ 0.5
TRAFD1-203ENST00000547063 ZNF536O15090 1300 aa18.17■□□□□ 0.5
TRAFD1-203ENST00000547063 STAT3P40763 770 aa18.16■□□□□ 0.5
TRAFD1-203ENST00000547063 SNRNP48Q6IEG0 339 aaKnown RBP18.16■□□□□ 0.5
TRAFD1-203ENST00000547063 TYW1BQ6NUM6 668 aa18.16■□□□□ 0.5
TRAFD1-203ENST00000547063 REXO1Q8N1G1 1221 aaKnown RBP18.16■□□□□ 0.5
TRAFD1-203ENST00000547063 AGBL1Q96MI9 1066 aa18.16■□□□□ 0.5
TRAFD1-203ENST00000547063 MAP3K20Q9NYL2 800 aaKnown RBP18.16■□□□□ 0.5
TRAFD1-203ENST00000547063 ZNF214Q9UL59 606 aaPredicted RBP18.16■□□□□ 0.5
TRAFD1-203ENST00000547063 COL11A1P12107 1806 aaPredicted RBP18.16■□□□□ 0.5
TRAFD1-203ENST00000547063 BTBD18B2RXH4 712 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 SLC25A27O95847 323 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 ALDH1A1P00352 501 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 ALAS1P13196 640 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 TM4SF4P48230 202 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 RESTQ13127 1097 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 PLS1Q14651 629 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 TMEM132BQ14DG7 1078 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 CYP4F22Q6NT55 531 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 KRT25Q7Z3Z0 450 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 FERMT3Q86UX7 667 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 IFNL1Q8IU54 200 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 NOSTRINQ8IVI9 506 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 FAM43AQ8N2R8 423 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 SHISA4Q96DD7 197 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 CAPNS2Q96L46 248 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 PTPN18Q99952 460 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 FBXO40Q9UH90 709 aa18.15■□□□□ 0.5
TRAFD1-203ENST00000547063 CCNA1P78396 465 aa18.14■□□□□ 0.49
TRAFD1-203ENST00000547063 NPY5RQ15761 445 aa18.14■□□□□ 0.49
TRAFD1-203ENST00000547063 FOXD4L5Q5VV16 416 aaPredicted RBP18.14■□□□□ 0.49
TRAFD1-203ENST00000547063 ATL3Q6DD88 541 aa18.14■□□□□ 0.49
TRAFD1-203ENST00000547063 RIOX2Q8IUF8 465 aa18.14■□□□□ 0.49
TRAFD1-203ENST00000547063 CHST13Q8NET6 341 aa18.14■□□□□ 0.49
TRAFD1-203ENST00000547063 FOXD4L4Q8WXT5 416 aaPredicted RBP18.14■□□□□ 0.49
TRAFD1-203ENST00000547063 CCDC194A0A1B0GVG4 234 aa18.13■□□□□ 0.49
TRAFD1-203ENST00000547063 PIK3CDO00329 1044 aa18.13■□□□□ 0.49
TRAFD1-203ENST00000547063 FOSP01100 380 aaPredicted RBP18.13■□□□□ 0.49
TRAFD1-203ENST00000547063 GRM1Q13255 1194 aa18.13■□□□□ 0.49
TRAFD1-203ENST00000547063 AP3B2Q13367 1082 aa18.13■□□□□ 0.49
TRAFD1-203ENST00000547063 ZNF396Q96N95 335 aaPredicted RBP18.13■□□□□ 0.49
TRAFD1-203ENST00000547063 TRERF1Q96PN7 1200 aa18.13■□□□□ 0.49
TRAFD1-203ENST00000547063 PAGR1Q9BTK6 254 aa18.13■□□□□ 0.49
TRAFD1-203ENST00000547063 SPATC1LQ9H0A9 340 aa18.13■□□□□ 0.49
TRAFD1-203ENST00000547063 NOL7Q9UMY1 257 aaKnown RBP18.13■□□□□ 0.49
TRAFD1-203ENST00000547063 GCOM1H8Y6P7 765 aaPredicted RBP18.12■□□□□ 0.49
TRAFD1-203ENST00000547063 POLR2MP0CAP2 368 aa18.12■□□□□ 0.49
TRAFD1-203ENST00000547063 CYP2C8P10632 490 aa18.12■□□□□ 0.49
TRAFD1-203ENST00000547063 TAF1CQ15572 869 aaPredicted RBP18.12■□□□□ 0.49
TRAFD1-203ENST00000547063 RILPL1Q5EBL4 403 aa18.12■□□□□ 0.49
TRAFD1-203ENST00000547063 GPRC5AQ8NFJ5 357 aa18.12■□□□□ 0.49
TRAFD1-203ENST00000547063 OXER1Q8TDS5 423 aa18.12■□□□□ 0.49
TRAFD1-203ENST00000547063 TNPO1Q92973 898 aaKnown RBP18.12■□□□□ 0.49
TRAFD1-203ENST00000547063 ACAD9Q9H845 621 aa18.12■□□□□ 0.49
TRAFD1-203ENST00000547063 EHMT1Q9H9B1 1298 aa18.12■□□□□ 0.49
TRAFD1-203ENST00000547063 RNF146Q9NTX7 359 aa18.12■□□□□ 0.49
TRAFD1-203ENST00000547063 BTBD7Q9P203 1132 aa18.12■□□□□ 0.49
TRAFD1-203ENST00000547063 RBPJLQ9UBG7 517 aa18.12■□□□□ 0.49
TRAFD1-203ENST00000547063 KIF28PB7ZC32 967 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 M0R2N6 131 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 IGF2BP3O00425 579 aaKnown RBP eCLIP18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 CFBP00751 764 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 MAP2K2P36507 400 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 TRAPPC10P48553 1259 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 ERVK-9P63128 1117 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 ERVK-24P63145 666 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 GHRHRQ02643 423 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 NR5A1Q13285 461 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 NONOQ15233 471 aaKnown RBP eCLIP18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 SHCBP1Q8NEM2 672 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 TNFRSF25Q93038 417 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 GBP4Q96PP9 640 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 MROH8Q9H579 483 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 ZFYVE28Q9HCC9 887 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 MORF4L1Q9UBU8 362 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 CFAP45Q9UL16 551 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 PCDHA6Q9UN73 950 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 PCDHA8Q9Y5H6 950 aa18.11■□□□□ 0.49
TRAFD1-203ENST00000547063 RBBP6Q7Z6E9 1792 aaKnown RBP18.1■□□□□ 0.49
TRAFD1-203ENST00000547063 SPDYE3A6NKU9 549 aa18.1■□□□□ 0.49
TRAFD1-203ENST00000547063 MEIS2O14770 477 aa18.1■□□□□ 0.49
TRAFD1-203ENST00000547063 CNMDO75829 334 aa18.1■□□□□ 0.49
TRAFD1-203ENST00000547063 CLK2P49760 499 aaKnown RBP18.1■□□□□ 0.49
TRAFD1-203ENST00000547063 FAM110CQ1W6H9 321 aa18.1■□□□□ 0.49
TRAFD1-203ENST00000547063 MYSM1Q5VVJ2 828 aa18.1■□□□□ 0.49
TRAFD1-203ENST00000547063 CLEC17AQ6ZS10 378 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms