RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 RGS2P41220 211 aa15.93■□□□□ 0.14
PTCH1-213ENST00000546820 MCM2P49736 904 aa15.93■□□□□ 0.14
PTCH1-213ENST00000546820 USH1GQ495M9 461 aa15.93■□□□□ 0.14
PTCH1-213ENST00000546820 NOL8Q76FK4 1167 aaKnown RBP15.93■□□□□ 0.14
PTCH1-213ENST00000546820 PIBF1Q8WXW3 757 aa15.93■□□□□ 0.14
PTCH1-213ENST00000546820 GJD2Q9UKL4 321 aa15.93■□□□□ 0.14
PTCH1-213ENST00000546820 V9GY48 417 aaPredicted RBP15.93■□□□□ 0.14
PTCH1-213ENST00000546820 A0A0G2JMZ2 1700 aa15.93■□□□□ 0.14
PTCH1-213ENST00000546820 IFNAR1P17181 557 aa15.92■□□□□ 0.14
PTCH1-213ENST00000546820 FLT3LGP49771 235 aa15.92■□□□□ 0.14
PTCH1-213ENST00000546820 MAP2K5Q13163 448 aa15.92■□□□□ 0.14
PTCH1-213ENST00000546820 IRF5Q13568 498 aa15.92■□□□□ 0.14
PTCH1-213ENST00000546820 GRB14Q14449 540 aa15.92■□□□□ 0.14
PTCH1-213ENST00000546820 MORN1Q5T089 497 aa15.92■□□□□ 0.14
PTCH1-213ENST00000546820 MCF2L2Q86YR7 1114 aa15.92■□□□□ 0.14
PTCH1-213ENST00000546820 TRMT44Q8IYL2 757 aaKnown RBP15.92■□□□□ 0.14
PTCH1-213ENST00000546820 TRIM22Q8IYM9 498 aa15.92■□□□□ 0.14
PTCH1-213ENST00000546820 NCOA5Q9HCD5 579 aaKnown RBP15.92■□□□□ 0.14
PTCH1-213ENST00000546820 PTPN22Q9Y2R2 807 aa15.92■□□□□ 0.14
PTCH1-213ENST00000546820 MGAMO43451 1857 aa15.91■□□□□ 0.14
PTCH1-213ENST00000546820 PRPF3O43395 683 aaKnown RBP15.91■□□□□ 0.14
PTCH1-213ENST00000546820 XRCC5P13010 732 aaKnown RBP15.91■□□□□ 0.14
PTCH1-213ENST00000546820 ADORA2AP29274 412 aa15.91■□□□□ 0.14
PTCH1-213ENST00000546820 PRKCZQ05513 592 aa15.91■□□□□ 0.14
PTCH1-213ENST00000546820 SSRP1Q08945 709 aaKnown RBP15.91■□□□□ 0.14
PTCH1-213ENST00000546820 SLC35G1Q2M3R5 365 aa15.91■□□□□ 0.14
PTCH1-213ENST00000546820 FBXO46Q6PJ61 603 aaPredicted RBP15.91■□□□□ 0.14
PTCH1-213ENST00000546820 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.91■□□□□ 0.14
PTCH1-213ENST00000546820 SAMD3Q8N6K7 520 aa15.91■□□□□ 0.14
PTCH1-213ENST00000546820 RGS22Q8NE09 1264 aa15.91■□□□□ 0.14
PTCH1-213ENST00000546820 SH2B1Q9NRF2 756 aaPredicted RBP15.91■□□□□ 0.14
PTCH1-213ENST00000546820 GABRQQ9UN88 632 aa15.91■□□□□ 0.14
PTCH1-213ENST00000546820 PFASO15067 1338 aa15.91■□□□□ 0.14
PTCH1-213ENST00000546820 BAZ2BQ9UIF8 2168 aaKnown RBP15.9■□□□□ 0.14
PTCH1-213ENST00000546820 hCG_1984214I3L0E3 225 aa15.9■□□□□ 0.14
PTCH1-213ENST00000546820 CYP2B6P20813 491 aa15.9■□□□□ 0.14
PTCH1-213ENST00000546820 CAP1Q01518 475 aa15.9■□□□□ 0.14
PTCH1-213ENST00000546820 FUT2Q10981 343 aa15.9■□□□□ 0.14
PTCH1-213ENST00000546820 SCRN1Q12765 414 aa15.9■□□□□ 0.14
PTCH1-213ENST00000546820 ME3Q16798 604 aa15.9■□□□□ 0.14
PTCH1-213ENST00000546820 MUM1L1Q5H9M0 696 aa15.9■□□□□ 0.14
PTCH1-213ENST00000546820 NSMFQ6X4W1 530 aa15.9■□□□□ 0.14
PTCH1-213ENST00000546820 ZNF713Q8N859 430 aaPredicted RBP15.9■□□□□ 0.14
PTCH1-213ENST00000546820 PXYLP1Q8TE99 480 aa15.9■□□□□ 0.14
PTCH1-213ENST00000546820 USP6NLQ92738 828 aa15.9■□□□□ 0.14
PTCH1-213ENST00000546820 RNF26Q9BY78 433 aaPredicted RBP15.9■□□□□ 0.14
PTCH1-213ENST00000546820 MAP3K20Q9NYL2 800 aaKnown RBP15.9■□□□□ 0.14
PTCH1-213ENST00000546820 PTPDC1A2A3K4 754 aa15.89■□□□□ 0.13
PTCH1-213ENST00000546820 POTEB2H3BUK9 544 aa15.89■□□□□ 0.13
PTCH1-213ENST00000546820 NTRK3Q16288 839 aa15.89■□□□□ 0.13
PTCH1-213ENST00000546820 RNF207Q6ZRF8 634 aa15.89■□□□□ 0.13
PTCH1-213ENST00000546820 CLEC4DQ8WXI8 215 aa15.89■□□□□ 0.13
PTCH1-213ENST00000546820 SLC26A6Q9BXS9 759 aa15.89■□□□□ 0.13
PTCH1-213ENST00000546820 DIS3Q9Y2L1 958 aaKnown RBP15.89■□□□□ 0.13
PTCH1-213ENST00000546820 CNTNAP5Q8WYK1 1306 aa15.89■□□□□ 0.13
PTCH1-213ENST00000546820 MYH6P13533 1939 aa15.88■□□□□ 0.13
PTCH1-213ENST00000546820 hCG_1642624A0A1W2PR95 340 aa15.88■□□□□ 0.13
PTCH1-213ENST00000546820 ADCY3O60266 1144 aa15.88■□□□□ 0.13
PTCH1-213ENST00000546820 PPP1R11O60927 126 aaPredicted RBP15.88■□□□□ 0.13
PTCH1-213ENST00000546820 HOXC6P09630 235 aa15.88■□□□□ 0.13
PTCH1-213ENST00000546820 HEATR3Q7Z4Q2 680 aa15.88■□□□□ 0.13
PTCH1-213ENST00000546820 NECAB1Q8N987 351 aa15.88■□□□□ 0.13
PTCH1-213ENST00000546820 SLAIN1Q8ND83 568 aa15.88■□□□□ 0.13
PTCH1-213ENST00000546820 PHKBQ93100 1093 aa15.88■□□□□ 0.13
PTCH1-213ENST00000546820 GTF3C6Q969F1 213 aa15.88■□□□□ 0.13
PTCH1-213ENST00000546820 APBA2Q99767 749 aa15.88■□□□□ 0.13
PTCH1-213ENST00000546820 A1CFQ9NQ94 594 aaKnown RBP15.88■□□□□ 0.13
PTCH1-213ENST00000546820 CYP39A1Q9NYL5 469 aa15.88■□□□□ 0.13
PTCH1-213ENST00000546820 BIN2Q9UBW5 565 aaPredicted RBP15.88■□□□□ 0.13
PTCH1-213ENST00000546820 PTCH2Q9Y6C5 1203 aa15.88■□□□□ 0.13
PTCH1-213ENST00000546820 DOCK3Q8IZD9 2030 aa15.88■□□□□ 0.13
PTCH1-213ENST00000546820 B4DLN1 442 aa15.87■□□□□ 0.13
PTCH1-213ENST00000546820 NFIBO00712 420 aa15.87■□□□□ 0.13
PTCH1-213ENST00000546820 COBLO75128 1261 aa15.87■□□□□ 0.13
PTCH1-213ENST00000546820 CFBP00751 764 aa15.87■□□□□ 0.13
PTCH1-213ENST00000546820 PGK2P07205 417 aa15.87■□□□□ 0.13
PTCH1-213ENST00000546820 SCG2P13521 617 aa15.87■□□□□ 0.13
PTCH1-213ENST00000546820 GRK4P32298 578 aa15.87■□□□□ 0.13
PTCH1-213ENST00000546820 MRPL12P52815 198 aaKnown RBP15.87■□□□□ 0.13
PTCH1-213ENST00000546820 BAATQ14032 418 aaPredicted RBP15.87■□□□□ 0.13
PTCH1-213ENST00000546820 PFKFB3Q16875 520 aaPredicted RBP15.87■□□□□ 0.13
PTCH1-213ENST00000546820 CCDC12Q8WUD4 166 aaPredicted RBP15.87■□□□□ 0.13
PTCH1-213ENST00000546820 CUL5Q93034 780 aa15.87■□□□□ 0.13
PTCH1-213ENST00000546820 MCOLN1Q9GZU1 580 aa15.87■□□□□ 0.13
PTCH1-213ENST00000546820 GLT8D2Q9H1C3 349 aa15.87■□□□□ 0.13
PTCH1-213ENST00000546820 ADD3Q9UEY8 706 aaKnown RBP15.87■□□□□ 0.13
PTCH1-213ENST00000546820 ZNFX1Q9P2E3 1918 aaKnown RBP15.86■□□□□ 0.13
PTCH1-213ENST00000546820 DNAJC25-GNG10A0A024R161 153 aa15.86■□□□□ 0.13
PTCH1-213ENST00000546820 GCOM1H8Y6P7 765 aaPredicted RBP15.86■□□□□ 0.13
PTCH1-213ENST00000546820 DEXIO95424 95 aa15.86■□□□□ 0.13
PTCH1-213ENST00000546820 POLR2MP0CAP2 368 aa15.86■□□□□ 0.13
PTCH1-213ENST00000546820 CALML3P27482 149 aa15.86■□□□□ 0.13
PTCH1-213ENST00000546820 NAPAP54920 295 aa15.86■□□□□ 0.13
PTCH1-213ENST00000546820 ZNF792Q3KQV3 632 aa15.86■□□□□ 0.13
PTCH1-213ENST00000546820 SLC9C1Q4G0N8 1177 aa15.86■□□□□ 0.13
PTCH1-213ENST00000546820 COL13A1Q5TAT6 717 aaPredicted RBP15.86■□□□□ 0.13
PTCH1-213ENST00000546820 MFSD14CQ5VZR4 134 aa15.86■□□□□ 0.13
PTCH1-213ENST00000546820 TEX2Q8IWB9 1127 aa15.86■□□□□ 0.13
PTCH1-213ENST00000546820 WASF1Q92558 559 aa15.86■□□□□ 0.13
PTCH1-213ENST00000546820 MPHOSPH6Q99547 160 aaKnown RBP15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms