RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 SLC4A3P48751 1232 aa21.74■■□□□ 1.07
VPS33A-205ENST00000541169 CAP1Q01518 475 aa21.74■■□□□ 1.07
VPS33A-205ENST00000541169 SLC9C1Q4G0N8 1177 aa21.74■■□□□ 1.07
VPS33A-205ENST00000541169 SRBD1Q8N5C6 995 aaKnown RBP21.74■■□□□ 1.07
VPS33A-205ENST00000541169 MSL3Q8N5Y2 521 aaKnown RBP21.74■■□□□ 1.07
VPS33A-205ENST00000541169 ZNF713Q8N859 430 aaPredicted RBP21.74■■□□□ 1.07
VPS33A-205ENST00000541169 CPVLQ9H3G5 476 aa21.74■■□□□ 1.07
VPS33A-205ENST00000541169 GABRQQ9UN88 632 aa21.74■■□□□ 1.07
VPS33A-205ENST00000541169 ZSWIM8A7E2V4 1837 aa21.73■■□□□ 1.07
VPS33A-205ENST00000541169 LOC102724159A0A0B4J2E5 919 aa21.73■■□□□ 1.07
VPS33A-205ENST00000541169 CYTH3O43739 400 aa21.73■■□□□ 1.07
VPS33A-205ENST00000541169 ADCY3O60266 1144 aa21.73■■□□□ 1.07
VPS33A-205ENST00000541169 RXRAP19793 462 aa21.73■■□□□ 1.07
VPS33A-205ENST00000541169 GRK4P32298 578 aa21.73■■□□□ 1.07
VPS33A-205ENST00000541169 PWP2Q15269 919 aaKnown RBP21.73■■□□□ 1.07
VPS33A-205ENST00000541169 CCDC144CPQ8IYA2 1237 aa21.73■■□□□ 1.07
VPS33A-205ENST00000541169 HPS5Q9UPZ3 1129 aa21.73■■□□□ 1.07
VPS33A-205ENST00000541169 PCDHA1Q9Y5I3 950 aa21.73■■□□□ 1.07
VPS33A-205ENST00000541169 PTCH2Q9Y6C5 1203 aa21.73■■□□□ 1.07
VPS33A-205ENST00000541169 DOCK3Q8IZD9 2030 aa21.73■■□□□ 1.07
VPS33A-205ENST00000541169 ST18O60284 1047 aa21.72■■□□□ 1.07
VPS33A-205ENST00000541169 CDKL5O76039 1030 aa21.72■■□□□ 1.07
VPS33A-205ENST00000541169 AK2P54819 239 aa21.72■■□□□ 1.07
VPS33A-205ENST00000541169 SNAP25P60880 206 aa21.72■■□□□ 1.07
VPS33A-205ENST00000541169 OLFML2BQ68BL8 750 aa21.72■■□□□ 1.07
VPS33A-205ENST00000541169 ZNF467Q7Z7K2 595 aaPredicted RBP21.72■■□□□ 1.07
VPS33A-205ENST00000541169 HOMER1Q86YM7 354 aa21.72■■□□□ 1.07
VPS33A-205ENST00000541169 PIGSQ96S52 555 aa21.72■■□□□ 1.07
VPS33A-205ENST00000541169 HOMER2Q9NSB8 354 aa21.72■■□□□ 1.07
VPS33A-205ENST00000541169 ZNFX1Q9P2E3 1918 aaKnown RBP21.71■■□□□ 1.07
VPS33A-205ENST00000541169 DNAJC25-GNG10A0A024R161 153 aa21.71■■□□□ 1.07
VPS33A-205ENST00000541169 CPLX1O14810 134 aa21.71■■□□□ 1.07
VPS33A-205ENST00000541169 ECM2O94769 699 aaPredicted RBP21.71■■□□□ 1.07
VPS33A-205ENST00000541169 PLEKHA8P1O95397 391 aa21.71■■□□□ 1.07
VPS33A-205ENST00000541169 HMGCRP04035 888 aa21.71■■□□□ 1.07
VPS33A-205ENST00000541169 UBXN2AP68543 259 aa21.71■■□□□ 1.07
VPS33A-205ENST00000541169 TNS4Q8IZW8 715 aa21.71■■□□□ 1.07
VPS33A-205ENST00000541169 ARMC5Q96C12 935 aa21.71■■□□□ 1.07
VPS33A-205ENST00000541169 MPHOSPH6Q99547 160 aaKnown RBP21.71■■□□□ 1.07
VPS33A-205ENST00000541169 KIF2CQ99661 725 aa21.71■■□□□ 1.07
VPS33A-205ENST00000541169 SLKQ9H2G2 1235 aaPredicted RBP21.71■■□□□ 1.07
VPS33A-205ENST00000541169 B4DLN1 442 aa21.7■■□□□ 1.06
VPS33A-205ENST00000541169 IFNAR1P17181 557 aa21.7■■□□□ 1.06
VPS33A-205ENST00000541169 CAPN2P17655 700 aa21.7■■□□□ 1.06
VPS33A-205ENST00000541169 CYP2B6P20813 491 aa21.7■■□□□ 1.06
VPS33A-205ENST00000541169 MCM2P49736 904 aa21.7■■□□□ 1.06
VPS33A-205ENST00000541169 MRPL12P52815 198 aaKnown RBP21.7■■□□□ 1.06
VPS33A-205ENST00000541169 AKAP17AQ02040 695 aaKnown RBP21.7■■□□□ 1.06
VPS33A-205ENST00000541169 USH1GQ495M9 461 aa21.7■■□□□ 1.06
VPS33A-205ENST00000541169 TRIM22Q8IYM9 498 aa21.7■■□□□ 1.06
VPS33A-205ENST00000541169 ZSCAN31Q96LW9 406 aaPredicted RBP21.7■■□□□ 1.06
VPS33A-205ENST00000541169 A1CFQ9NQ94 594 aaKnown RBP21.7■■□□□ 1.06
VPS33A-205ENST00000541169 FAM217BQ9NTX9 383 aaPredicted RBP21.7■■□□□ 1.06
VPS33A-205ENST00000541169 CYP39A1Q9NYL5 469 aa21.7■■□□□ 1.06
VPS33A-205ENST00000541169 ADD3Q9UEY8 706 aaKnown RBP21.7■■□□□ 1.06
VPS33A-205ENST00000541169 POTEB2H3BUK9 544 aa21.69■■□□□ 1.06
VPS33A-205ENST00000541169 PFKFB2O60825 505 aa21.69■■□□□ 1.06
VPS33A-205ENST00000541169 FUT2Q10981 343 aa21.69■■□□□ 1.06
VPS33A-205ENST00000541169 ZNF792Q3KQV3 632 aa21.69■■□□□ 1.06
VPS33A-205ENST00000541169 MFSD14CQ5VZR4 134 aa21.69■■□□□ 1.06
VPS33A-205ENST00000541169 RNF207Q6ZRF8 634 aa21.69■■□□□ 1.06
VPS33A-205ENST00000541169 FAM177A1Q8N128 213 aaPredicted RBP21.69■■□□□ 1.06
VPS33A-205ENST00000541169 CLEC4DQ8WXI8 215 aa21.69■■□□□ 1.06
VPS33A-205ENST00000541169 RNF26Q9BY78 433 aaPredicted RBP21.69■■□□□ 1.06
VPS33A-205ENST00000541169 GLT8D2Q9H1C3 349 aa21.69■■□□□ 1.06
VPS33A-205ENST00000541169 NRBP1Q9UHY1 535 aa21.69■■□□□ 1.06
VPS33A-205ENST00000541169 LIMCH1Q9UPQ0 1083 aa21.69■■□□□ 1.06
VPS33A-205ENST00000541169 PRPF3O43395 683 aaKnown RBP21.68■■□□□ 1.06
VPS33A-205ENST00000541169 CDC27P30260 824 aa21.68■■□□□ 1.06
VPS33A-205ENST00000541169 ADD1P35611 737 aaKnown RBP21.68■■□□□ 1.06
VPS33A-205ENST00000541169 GHRHRQ02643 423 aa21.68■■□□□ 1.06
VPS33A-205ENST00000541169 SLC35G1Q2M3R5 365 aa21.68■■□□□ 1.06
VPS33A-205ENST00000541169 MUM1L1Q5H9M0 696 aa21.68■■□□□ 1.06
VPS33A-205ENST00000541169 RAB11FIP4Q86YS3 637 aa21.68■■□□□ 1.06
VPS33A-205ENST00000541169 BIN2Q9UBW5 565 aaPredicted RBP21.68■■□□□ 1.06
VPS33A-205ENST00000541169 TPCN1Q9ULQ1 816 aa21.68■■□□□ 1.06
VPS33A-205ENST00000541169 CNTNAP5Q8WYK1 1306 aa21.68■■□□□ 1.06
VPS33A-205ENST00000541169 ASB14A6NK59 587 aa21.67■■□□□ 1.06
VPS33A-205ENST00000541169 COBLO75128 1261 aa21.67■■□□□ 1.06
VPS33A-205ENST00000541169 PPP1R18Q6NYC8 613 aa21.67■■□□□ 1.06
VPS33A-205ENST00000541169 MAMDC4Q6UXC1 1216 aa21.67■■□□□ 1.06
VPS33A-205ENST00000541169 NSMFQ6X4W1 530 aa21.67■■□□□ 1.06
VPS33A-205ENST00000541169 CCDC82Q8N4S0 544 aa21.67■■□□□ 1.06
VPS33A-205ENST00000541169 FAM133AQ8N9E0 248 aa21.67■■□□□ 1.06
VPS33A-205ENST00000541169 DNERQ8NFT8 737 aa21.67■■□□□ 1.06
VPS33A-205ENST00000541169 CCDC12Q8WUD4 166 aaPredicted RBP21.67■■□□□ 1.06
VPS33A-205ENST00000541169 MAML3Q96JK9 1138 aa21.67■■□□□ 1.06
VPS33A-205ENST00000541169 SH2B1Q9NRF2 756 aaPredicted RBP21.67■■□□□ 1.06
VPS33A-205ENST00000541169 V9GY48 417 aaPredicted RBP21.67■■□□□ 1.06
VPS33A-205ENST00000541169 RBBP6Q7Z6E9 1792 aaKnown RBP21.66■■□□□ 1.06
VPS33A-205ENST00000541169 SYNGAP1Q96PV0 1343 aa21.66■■□□□ 1.06
VPS33A-205ENST00000541169 PTPDC1A2A3K4 754 aa21.66■■□□□ 1.06
VPS33A-205ENST00000541169 NFIBO00712 420 aa21.66■■□□□ 1.06
VPS33A-205ENST00000541169 PPP1R11O60927 126 aaPredicted RBP21.66■■□□□ 1.06
VPS33A-205ENST00000541169 NTRK3Q16288 839 aa21.66■■□□□ 1.06
VPS33A-205ENST00000541169 CMTR1Q8N1G2 835 aaKnown RBP21.66■■□□□ 1.06
VPS33A-205ENST00000541169 TRIB2Q92519 343 aa21.66■■□□□ 1.06
VPS33A-205ENST00000541169 PLXNA1Q9UIW2 1896 aa21.66■■□□□ 1.06
VPS33A-205ENST00000541169 BAZ2BQ9UIF8 2168 aaKnown RBP21.65■■□□□ 1.06
VPS33A-205ENST00000541169 PGK2P07205 417 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms