RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 PRDX5P30044 214 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 CAP2P40123 477 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 CCL23P55773 120 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 PICALMQ13492 652 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 TTLL4Q14679 1199 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 NFKBIBQ15653 356 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 RNF180Q86T96 592 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 DPP9Q86TI2 863 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 ADSSL1Q8N142 457 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 TMX3Q96JJ7 454 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 JAKMIP1Q96N16 626 aaKnown RBP9.8□□□□□ -0.84
CHD4-208ENST00000540960 OSBPL5Q9H0X9 879 aaPredicted RBP9.8□□□□□ -0.84
CHD4-208ENST00000540960 TMOD4Q9NZQ9 345 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 RABGAP1Q9Y3P9 1069 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 SPTBN2O15020 2390 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 SCN5AQ14524 2016 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 MYADML2A6NDP7 307 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 ADAMTS4O75173 837 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 RARBP10826 455 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 ADORA2AP29274 412 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 DDIT3P35638 169 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 FGD1P98174 961 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 TRDNQ13061 729 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 RAB3GAP1Q15042 981 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 KCNA10Q16322 511 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 ST3GAL2Q16842 350 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 SLC9C2Q5TAH2 1124 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 CCSAPQ6IQ19 270 aaPredicted RBP9.79□□□□□ -0.84
CHD4-208ENST00000540960 CLEC17AQ6ZS10 378 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 TRIM67Q6ZTA4 783 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 RNF135Q8IUD6 432 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 SUGP1Q8IWZ8 645 aaKnown RBP9.79□□□□□ -0.84
CHD4-208ENST00000540960 FAM126BQ8IXS8 530 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 FBXL6Q8N531 539 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 NEK9Q8TD19 979 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 NEK1Q96PY6 1258 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 EMILIN3Q9NT22 766 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 IVNS1ABPQ9Y6Y0 642 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 PTPRSQ13332 1948 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 ZMYM6O95789 1325 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 WDR19Q8NEZ3 1342 aa9.79□□□□□ -0.84
CHD4-208ENST00000540960 DHX16O60231 1041 aaKnown RBP9.78□□□□□ -0.84
CHD4-208ENST00000540960 TBC1D12O60347 775 aa9.78□□□□□ -0.84
CHD4-208ENST00000540960 AVPR2P30518 371 aa9.78□□□□□ -0.84
CHD4-208ENST00000540960 ADORA1P30542 326 aa9.78□□□□□ -0.84
CHD4-208ENST00000540960 ADD2P35612 726 aa9.78□□□□□ -0.84
CHD4-208ENST00000540960 ZAP70P43403 619 aa9.78□□□□□ -0.84
CHD4-208ENST00000540960 CCNA1P78396 465 aa9.78□□□□□ -0.84
CHD4-208ENST00000540960 PTH1RQ03431 593 aa9.78□□□□□ -0.84
CHD4-208ENST00000540960 ACAP1Q15027 740 aa9.78□□□□□ -0.84
CHD4-208ENST00000540960 ALX1Q15699 326 aa9.78□□□□□ -0.84
CHD4-208ENST00000540960 ADHFE1Q8IWW8 467 aa9.78□□□□□ -0.84
CHD4-208ENST00000540960 WDR18Q9BV38 432 aa9.78□□□□□ -0.84
CHD4-208ENST00000540960 WNT8AQ9H1J5 351 aa9.78□□□□□ -0.84
CHD4-208ENST00000540960 PALD1Q9ULE6 856 aa9.78□□□□□ -0.84
CHD4-208ENST00000540960 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.78□□□□□ -0.84
CHD4-208ENST00000540960 EP300Q09472 2414 aaPredicted RBP9.78□□□□□ -0.84
CHD4-208ENST00000540960 GPR179Q6PRD1 2367 aa9.78□□□□□ -0.84
CHD4-208ENST00000540960 ZNF236Q9UL36 1845 aa9.77□□□□□ -0.84
CHD4-208ENST00000540960 IDH1O75874 414 aaKnown RBP9.77□□□□□ -0.85
CHD4-208ENST00000540960 CD4P01730 458 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 PCP11498 1178 aaKnown RBP9.77□□□□□ -0.85
CHD4-208ENST00000540960 RPS6KB1P23443 525 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 NBL1P41271 181 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 MCAMP43121 646 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 GSTO1P78417 241 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 NBR1Q14596 966 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 DHX32Q7L7V1 743 aaKnown RBP9.77□□□□□ -0.85
CHD4-208ENST00000540960 FBXL16Q8N461 479 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 KLHDC9Q8NEP7 349 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 NUP133Q8WUM0 1156 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 SCLYQ96I15 445 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 TTC14Q96N46 770 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 TSEN34Q9BSV6 310 aaKnown RBP9.77□□□□□ -0.85
CHD4-208ENST00000540960 MTA3Q9BTC8 594 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 UPF3BQ9BZI7 483 aaKnown RBP9.77□□□□□ -0.85
CHD4-208ENST00000540960 CNNM2Q9H8M5 875 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 AS3MTQ9HBK9 375 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 LRP2BPQ9P2M1 347 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 SMC3Q9UQE7 1217 aa9.77□□□□□ -0.85
CHD4-208ENST00000540960 LCHNA4D1U4 455 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 RBAK-RBAKDNI3L0D1 243 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 ARVCFO00192 962 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 ZNF213O14771 459 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 HSPD1P10809 573 aaKnown RBP9.76□□□□□ -0.85
CHD4-208ENST00000540960 MCM4P33991 863 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 PHKA1P46020 1223 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 GIMAP6Q6P9H5 292 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 FRMD5Q7Z6J6 570 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 RALYLQ86SE5 291 aaKnown RBP9.76□□□□□ -0.85
CHD4-208ENST00000540960 SLF2Q8IX21 1173 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 RASEFQ8IZ41 740 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 RGS22Q8NE09 1264 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 WDR66Q8TBY9 1149 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 GTF3C2Q8WUA4 911 aaPredicted RBP9.76□□□□□ -0.85
CHD4-208ENST00000540960 LLPHQ9BRT6 129 aaKnown RBP9.76□□□□□ -0.85
CHD4-208ENST00000540960 HIPK3Q9H422 1215 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 RNF41Q9H4P4 317 aaPredicted RBP9.76□□□□□ -0.85
CHD4-208ENST00000540960 SUGCTQ9HAC7 445 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 LMCD1Q9NZU5 365 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms