RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ZNF536O15090 1300 aa20.24■□□□□ 0.83
CLSTN3-210ENST00000540931 CYTH3O43739 400 aa20.23■□□□□ 0.83
CLSTN3-210ENST00000540931 PLEKHA8P1O95397 391 aa20.23■□□□□ 0.83
CLSTN3-210ENST00000540931 CDC27P30260 824 aa20.23■□□□□ 0.83
CLSTN3-210ENST00000540931 CCT2P78371 535 aaKnown RBP20.23■□□□□ 0.83
CLSTN3-210ENST00000540931 WDR78Q5VTH9 848 aa20.23■□□□□ 0.83
CLSTN3-210ENST00000540931 PPP1R18Q6NYC8 613 aa20.23■□□□□ 0.83
CLSTN3-210ENST00000540931 GPR142Q7Z601 462 aa20.23■□□□□ 0.83
CLSTN3-210ENST00000540931 HOMER1Q86YM7 354 aa20.23■□□□□ 0.83
CLSTN3-210ENST00000540931 PIGSQ96S52 555 aa20.23■□□□□ 0.83
CLSTN3-210ENST00000540931 FAM217BQ9NTX9 383 aaPredicted RBP20.23■□□□□ 0.83
CLSTN3-210ENST00000540931 LOC102724159A0A0B4J2E5 919 aa20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 B4DLN1 442 aa20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 DEXIO95424 95 aa20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 ALAS1P13196 640 aa20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 MRPL12P52815 198 aaKnown RBP20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 HMGN5P82970 282 aaKnown RBP20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 STK3Q13188 491 aa20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 PWP2Q15269 919 aaKnown RBP20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 ME3Q16798 604 aa20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 MCTP2Q6DN12 878 aa20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 SNX21Q969T3 373 aa20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 MPHOSPH6Q99547 160 aaKnown RBP20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 RNF146Q9NTX7 359 aa20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 DIS3Q9Y2L1 958 aaKnown RBP20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 CNTNAP5Q8WYK1 1306 aa20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 STK36Q9NRP7 1315 aa20.22■□□□□ 0.83
CLSTN3-210ENST00000540931 XRCC5P13010 732 aaKnown RBP20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 PTPREP23469 700 aa20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 RGS2P41220 211 aa20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 FUT2Q10981 343 aa20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 SCRN1Q12765 414 aa20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 NTRK3Q16288 839 aa20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 POTEEQ6S8J3 1075 aa20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 ANKRD35Q8N283 1001 aa20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 CCDC148Q8NFR7 591 aa20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 CD99L2Q8TCZ2 262 aa20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 DDX11Q96FC9 970 aa20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 AGBL1Q96MI9 1066 aa20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 MMP19Q99542 508 aa20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 SH3GLB2Q9NR46 395 aa20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 V9GY48 417 aaPredicted RBP20.21■□□□□ 0.83
CLSTN3-210ENST00000540931 COL11A1P12107 1806 aaPredicted RBP20.2■□□□□ 0.82
CLSTN3-210ENST00000540931 IRF5Q13568 498 aa20.2■□□□□ 0.82
CLSTN3-210ENST00000540931 GRB14Q14449 540 aa20.2■□□□□ 0.82
CLSTN3-210ENST00000540931 PFKFB3Q16875 520 aaPredicted RBP20.2■□□□□ 0.82
CLSTN3-210ENST00000540931 NBPF11Q86T75 865 aa20.2■□□□□ 0.82
CLSTN3-210ENST00000540931 RAB11FIP4Q86YS3 637 aa20.2■□□□□ 0.82
CLSTN3-210ENST00000540931 CCDC82Q8N4S0 544 aa20.2■□□□□ 0.82
CLSTN3-210ENST00000540931 PORCNQ9H237 461 aa20.2■□□□□ 0.82
CLSTN3-210ENST00000540931 SRRDQ9UH36 339 aa20.2■□□□□ 0.82
CLSTN3-210ENST00000540931 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.2■□□□□ 0.82
CLSTN3-210ENST00000540931 SCG2P13521 617 aa20.19■□□□□ 0.82
CLSTN3-210ENST00000540931 SLC4A3P48751 1232 aa20.19■□□□□ 0.82
CLSTN3-210ENST00000540931 DPP9Q86TI2 863 aa20.19■□□□□ 0.82
CLSTN3-210ENST00000540931 MSL3Q8N5Y2 521 aaKnown RBP20.19■□□□□ 0.82
CLSTN3-210ENST00000540931 CUL5Q93034 780 aa20.19■□□□□ 0.82
CLSTN3-210ENST00000540931 TRIM47Q96LD4 638 aa20.19■□□□□ 0.82
CLSTN3-210ENST00000540931 SLC26A6Q9BXS9 759 aa20.19■□□□□ 0.82
CLSTN3-210ENST00000540931 CPVLQ9H3G5 476 aa20.19■□□□□ 0.82
CLSTN3-210ENST00000540931 ADD3Q9UEY8 706 aaKnown RBP20.19■□□□□ 0.82
CLSTN3-210ENST00000540931 MYH6P13533 1939 aa20.18■□□□□ 0.82
CLSTN3-210ENST00000540931 HOXC6P09630 235 aa20.18■□□□□ 0.82
CLSTN3-210ENST00000540931 GNA11P29992 359 aa20.18■□□□□ 0.82
CLSTN3-210ENST00000540931 GHRHRQ02643 423 aa20.18■□□□□ 0.82
CLSTN3-210ENST00000540931 MAP2K5Q13163 448 aa20.18■□□□□ 0.82
CLSTN3-210ENST00000540931 USH1GQ495M9 461 aa20.18■□□□□ 0.82
CLSTN3-210ENST00000540931 MORN1Q5T089 497 aa20.18■□□□□ 0.82
CLSTN3-210ENST00000540931 GALNT17Q6IS24 598 aa20.18■□□□□ 0.82
CLSTN3-210ENST00000540931 NOL8Q76FK4 1167 aaKnown RBP20.18■□□□□ 0.82
CLSTN3-210ENST00000540931 HSCBQ8IWL3 235 aa20.18■□□□□ 0.82
CLSTN3-210ENST00000540931 BICD2Q8TD16 824 aa20.18■□□□□ 0.82
CLSTN3-210ENST00000540931 NCOA5Q9HCD5 579 aaKnown RBP20.18■□□□□ 0.82
CLSTN3-210ENST00000540931 BARHL2Q9NY43 387 aa20.18■□□□□ 0.82
CLSTN3-210ENST00000540931 TRIM17Q9Y577 477 aa20.18■□□□□ 0.82
CLSTN3-210ENST00000540931 RNF207Q6ZRF8 634 aa20.17■□□□□ 0.82
CLSTN3-210ENST00000540931 HEATR3Q7Z4Q2 680 aa20.17■□□□□ 0.82
CLSTN3-210ENST00000540931 CMTR1Q8N1G2 835 aaKnown RBP20.17■□□□□ 0.82
CLSTN3-210ENST00000540931 RAET1EQ8TD07 263 aa20.17■□□□□ 0.82
CLSTN3-210ENST00000540931 PXYLP1Q8TE99 480 aa20.17■□□□□ 0.82
CLSTN3-210ENST00000540931 TMX3Q96JJ7 454 aa20.17■□□□□ 0.82
CLSTN3-210ENST00000540931 APBA2Q99767 749 aa20.17■□□□□ 0.82
CLSTN3-210ENST00000540931 LARP6Q9BRS8 491 aaKnown RBP20.17■□□□□ 0.82
CLSTN3-210ENST00000540931 HOMER2Q9NSB8 354 aa20.17■□□□□ 0.82
CLSTN3-210ENST00000540931 RIPK3Q9Y572 518 aa20.17■□□□□ 0.82
CLSTN3-210ENST00000540931 ZNF236Q9UL36 1845 aa20.16■□□□□ 0.82
CLSTN3-210ENST00000540931 MGAMO43451 1857 aa20.16■□□□□ 0.82
CLSTN3-210ENST00000540931 ESYT2A0FGR8 921 aa20.16■□□□□ 0.82
CLSTN3-210ENST00000540931 PDIA4P13667 645 aaKnown RBP20.16■□□□□ 0.82
CLSTN3-210ENST00000540931 CALML3P27482 149 aa20.16■□□□□ 0.82
CLSTN3-210ENST00000540931 ADORA2AP29274 412 aa20.16■□□□□ 0.82
CLSTN3-210ENST00000540931 SNAP25P60880 206 aa20.16■□□□□ 0.82
CLSTN3-210ENST00000540931 OTOP1Q7RTM1 612 aa20.16■□□□□ 0.82
CLSTN3-210ENST00000540931 ZNF467Q7Z7K2 595 aaPredicted RBP20.16■□□□□ 0.82
CLSTN3-210ENST00000540931 DNERQ8NFT8 737 aa20.16■□□□□ 0.82
CLSTN3-210ENST00000540931 C6orf50Q9HD87 102 aa20.16■□□□□ 0.82
CLSTN3-210ENST00000540931 POTEB2H3BUK9 544 aa20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 GCOM1H8Y6P7 765 aaPredicted RBP20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 K7ELQ4 463 aaPredicted RBP20.15■□□□□ 0.82
CLSTN3-210ENST00000540931 PIK3CDO00329 1044 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms