RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MRPS25P82663 173 aaKnown RBP19.01■□□□□ 0.63
USP28-208ENST00000540438 ZNF658Q5TYW1 1059 aaPredicted RBP19.01■□□□□ 0.63
USP28-208ENST00000540438 KCNK18Q7Z418 384 aa19.01■□□□□ 0.63
USP28-208ENST00000540438 REXO1Q8N1G1 1221 aaKnown RBP19.01■□□□□ 0.63
USP28-208ENST00000540438 ZNF397Q8NF99 534 aaPredicted RBP19.01■□□□□ 0.63
USP28-208ENST00000540438 TCP11L1Q9NUJ3 509 aa19.01■□□□□ 0.63
USP28-208ENST00000540438 CYP27A1Q02318 531 aa19■□□□□ 0.63
USP28-208ENST00000540438 SPICE1Q8N0Z3 855 aa19■□□□□ 0.63
USP28-208ENST00000540438 L2HGDHQ9H9P8 463 aa19■□□□□ 0.63
USP28-208ENST00000540438 FRMD4AQ9P2Q2 1039 aaPredicted RBP19■□□□□ 0.63
USP28-208ENST00000540438 HDAC6Q9UBN7 1215 aa19■□□□□ 0.63
USP28-208ENST00000540438 CASZ1Q86V15 1759 aa19■□□□□ 0.63
USP28-208ENST00000540438 POLRMTO00411 1230 aaKnown RBP19■□□□□ 0.63
USP28-208ENST00000540438 BMP15O95972 392 aa19■□□□□ 0.63
USP28-208ENST00000540438 CCDC175P0C221 793 aa19■□□□□ 0.63
USP28-208ENST00000540438 OR52Z1P0C646 297 aa19■□□□□ 0.63
USP28-208ENST00000540438 ATP2B4P23634 1241 aa19■□□□□ 0.63
USP28-208ENST00000540438 LONP1P36776 959 aaKnown RBP19■□□□□ 0.63
USP28-208ENST00000540438 KIF4BQ2VIQ3 1234 aa19■□□□□ 0.63
USP28-208ENST00000540438 ANKRD40Q6AI12 368 aa19■□□□□ 0.63
USP28-208ENST00000540438 SLC35F6Q8N357 371 aa19■□□□□ 0.63
USP28-208ENST00000540438 CSGALNACT2Q8N6G5 542 aa19■□□□□ 0.63
USP28-208ENST00000540438 NEDD1Q8NHV4 660 aa19■□□□□ 0.63
USP28-208ENST00000540438 PPP1R11O60927 126 aaPredicted RBP19■□□□□ 0.63
USP28-208ENST00000540438 RHOXF2BP0C7M4 288 aa19■□□□□ 0.63
USP28-208ENST00000540438 GYS2P54840 703 aa19■□□□□ 0.63
USP28-208ENST00000540438 PPP4CP60510 307 aa19■□□□□ 0.63
USP28-208ENST00000540438 RHOXF2Q9BQY4 288 aa19■□□□□ 0.63
USP28-208ENST00000540438 SNED1Q8TER0 1413 aa19■□□□□ 0.63
USP28-208ENST00000540438 KLRC4O43908 158 aa18.99■□□□□ 0.63
USP28-208ENST00000540438 SRGAP2O75044 1071 aa18.99■□□□□ 0.63
USP28-208ENST00000540438 PPP2R3AQ06190 1150 aa18.99■□□□□ 0.63
USP28-208ENST00000540438 IKQ13123 557 aaPredicted RBP18.99■□□□□ 0.63
USP28-208ENST00000540438 USH1GQ495M9 461 aa18.99■□□□□ 0.63
USP28-208ENST00000540438 TRMT1LQ7Z2T5 733 aaKnown RBP18.99■□□□□ 0.63
USP28-208ENST00000540438 NEK8Q86SG6 692 aa18.99■□□□□ 0.63
USP28-208ENST00000540438 CCDC148Q8NFR7 591 aa18.99■□□□□ 0.63
USP28-208ENST00000540438 DRC1Q96MC2 740 aa18.99■□□□□ 0.63
USP28-208ENST00000540438 C6orf50Q9HD87 102 aa18.99■□□□□ 0.63
USP28-208ENST00000540438 DUSP10Q9Y6W6 482 aa18.99■□□□□ 0.63
USP28-208ENST00000540438 MYH8P13535 1937 aa18.99■□□□□ 0.63
USP28-208ENST00000540438 NPHP3-ACAD11A0A0J9YXS1 232 aa18.99■□□□□ 0.63
USP28-208ENST00000540438 APBA1Q02410 837 aa18.99■□□□□ 0.63
USP28-208ENST00000540438 SUGCTQ9HAC7 445 aa18.99■□□□□ 0.63
USP28-208ENST00000540438 ERICH4A6NGS2 130 aa18.98■□□□□ 0.63
USP28-208ENST00000540438 CHRNA5P30532 468 aa18.98■□□□□ 0.63
USP28-208ENST00000540438 MTMR4Q9NYA4 1195 aa18.98■□□□□ 0.63
USP28-208ENST00000540438 DDX41Q9UJV9 622 aaKnown RBP18.98■□□□□ 0.63
USP28-208ENST00000540438 MMP10P09238 476 aa18.98■□□□□ 0.63
USP28-208ENST00000540438 GNAQP50148 359 aa18.98■□□□□ 0.63
USP28-208ENST00000540438 ECM1Q16610 540 aa18.98■□□□□ 0.63
USP28-208ENST00000540438 ADGRF4Q8IZF3 695 aa18.98■□□□□ 0.63
USP28-208ENST00000540438 PSMB7Q99436 277 aa18.98■□□□□ 0.63
USP28-208ENST00000540438 MMTAG2Q9BU76 263 aaKnown RBP18.98■□□□□ 0.63
USP28-208ENST00000540438 PLEKP08567 350 aaPredicted RBP18.98■□□□□ 0.63
USP28-208ENST00000540438 STAT3P40763 770 aa18.98■□□□□ 0.63
USP28-208ENST00000540438 MTIF2P46199 727 aaKnown RBP18.98■□□□□ 0.63
USP28-208ENST00000540438 ADSSL1Q8N142 457 aa18.98■□□□□ 0.63
USP28-208ENST00000540438 CAPZA3Q96KX2 299 aa18.98■□□□□ 0.63
USP28-208ENST00000540438 BCAS3Q9H6U6 928 aa18.98■□□□□ 0.63
USP28-208ENST00000540438 ABHD10Q9NUJ1 306 aa18.98■□□□□ 0.63
USP28-208ENST00000540438 RWDD2AQ9UIY3 292 aa18.98■□□□□ 0.63
USP28-208ENST00000540438 KIF2AO00139 706 aaPredicted RBP18.97■□□□□ 0.63
USP28-208ENST00000540438 IL1R1P14778 569 aa18.97■□□□□ 0.63
USP28-208ENST00000540438 TRAPPC10P48553 1259 aa18.97■□□□□ 0.63
USP28-208ENST00000540438 DNA2P51530 1060 aa18.97■□□□□ 0.63
USP28-208ENST00000540438 NCAPH2Q6IBW4 605 aa18.97■□□□□ 0.63
USP28-208ENST00000540438 KRT26Q7Z3Y9 468 aa18.97■□□□□ 0.63
USP28-208ENST00000540438 COL23A1Q86Y22 540 aaPredicted RBP18.97■□□□□ 0.63
USP28-208ENST00000540438 KIFC2Q96AC6 838 aa18.97■□□□□ 0.63
USP28-208ENST00000540438 GDAP1L1Q96MZ0 367 aa18.97■□□□□ 0.63
USP28-208ENST00000540438 ZMYND12Q9H0C1 365 aa18.97■□□□□ 0.63
USP28-208ENST00000540438 FAM207AQ9NSI2 230 aaPredicted RBP18.97■□□□□ 0.63
USP28-208ENST00000540438 EXOC1Q9NV70 894 aa18.97■□□□□ 0.63
USP28-208ENST00000540438 LRWD1Q9UFC0 647 aa18.97■□□□□ 0.63
USP28-208ENST00000540438 CRY2Q49AN0 593 aa18.97■□□□□ 0.63
USP28-208ENST00000540438 CDC42EP5Q6NZY7 148 aa18.97■□□□□ 0.63
USP28-208ENST00000540438 EDIL3O43854 480 aa18.96■□□□□ 0.63
USP28-208ENST00000540438 PBX1P40424 430 aa18.96■□□□□ 0.63
USP28-208ENST00000540438 SYCP1Q15431 976 aa18.96■□□□□ 0.63
USP28-208ENST00000540438 CALCRLQ16602 461 aa18.96■□□□□ 0.63
USP28-208ENST00000540438 NELFCDQ8IXH7 590 aa18.96■□□□□ 0.63
USP28-208ENST00000540438 SMCR8Q8TEV9 937 aaPredicted RBP18.96■□□□□ 0.63
USP28-208ENST00000540438 TADA3O75528 432 aa18.96■□□□□ 0.63
USP28-208ENST00000540438 TRIM21P19474 475 aaKnown RBP18.96■□□□□ 0.63
USP28-208ENST00000540438 FKBP15Q5T1M5 1219 aa18.96■□□□□ 0.63
USP28-208ENST00000540438 CDK5RAP3Q96JB5 506 aa18.96■□□□□ 0.63
USP28-208ENST00000540438 FGFBP2Q9BYJ0 223 aa18.96■□□□□ 0.63
USP28-208ENST00000540438 TRIM9Q9C026 710 aa18.96■□□□□ 0.63
USP28-208ENST00000540438 SERPINB13Q9UIV8 391 aa18.96■□□□□ 0.63
USP28-208ENST00000540438 DDTLA6NHG4 134 aaPredicted RBP18.95■□□□□ 0.62
USP28-208ENST00000540438 MYMKA6NI61 221 aa18.95■□□□□ 0.62
USP28-208ENST00000540438 ARL6IP4Q66PJ3 421 aaKnown RBP18.95■□□□□ 0.62
USP28-208ENST00000540438 ZNF771Q7L3S4 317 aaPredicted RBP18.95■□□□□ 0.62
USP28-208ENST00000540438 ANKRD13CQ8N6S4 541 aa18.95■□□□□ 0.62
USP28-208ENST00000540438 PLEKHA4Q9H4M7 779 aa18.95■□□□□ 0.62
USP28-208ENST00000540438 JMJD4Q9H9V9 463 aa18.95■□□□□ 0.62
USP28-208ENST00000540438 ZMYND10O75800 440 aa18.95■□□□□ 0.62
USP28-208ENST00000540438 TPM1P09493 284 aa18.95■□□□□ 0.62
USP28-208ENST00000540438 TBC1D8BQ0IIM8 1120 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms