RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 PFKFB3Q16875 520 aaPredicted RBP12.54□□□□□ -0.4
SYNE1-237ENST00000539504 NFRKBQ6P4R8 1299 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 P2RX5Q93086 422 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 TCP11L1Q9NUJ3 509 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 SNX12Q9UMY4 172 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 TRPM3Q9HCF6 1732 aaPredicted RBP12.53□□□□□ -0.4
SYNE1-237ENST00000539504 BICDL2A1A5D9 508 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 FNBP4Q8N3X1 1017 aaPredicted RBP12.53□□□□□ -0.4
SYNE1-237ENST00000539504 NOC3LQ8WTT2 800 aaKnown RBP12.53□□□□□ -0.4
SYNE1-237ENST00000539504 TMEM60Q9H2L4 133 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 ANAPC4Q9UJX5 808 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 CAPN6Q9Y6Q1 641 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 MYO5AQ9Y4I1 1855 aaKnown RBP12.53□□□□□ -0.4
SYNE1-237ENST00000539504 NDUFAB1O14561 156 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 TTI2Q6NXR4 508 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 SPATA4Q8NEY3 305 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 IFT81Q8WYA0 676 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 TANGO6Q9C0B7 1094 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 FAM205AQ6ZU69 1335 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 GLI3P10071 1580 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 KIAA0754O94854 1291 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 MNAT1P51948 309 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 MEA1Q16626 185 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 TDRD12Q587J7 1177 aaKnown RBP12.53□□□□□ -0.4
SYNE1-237ENST00000539504 CAVIN4Q5BKX8 364 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 ANKRD40Q6AI12 368 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 C8orf74Q6P047 294 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 RETREG2Q8NC44 543 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 NUP188Q5SRE5 1749 aa12.53□□□□□ -0.4
SYNE1-237ENST00000539504 GOLGA8KD6RF30 607 aa12.52□□□□□ -0.4
SYNE1-237ENST00000539504 NCK2O43639 380 aa12.52□□□□□ -0.4
SYNE1-237ENST00000539504 ZPR1O75312 459 aa12.52□□□□□ -0.4
SYNE1-237ENST00000539504 CYP2D6P10635 497 aa12.52□□□□□ -0.4
SYNE1-237ENST00000539504 CCNE1P24864 410 aa12.52□□□□□ -0.4
SYNE1-237ENST00000539504 INPP5BP32019 993 aa12.52□□□□□ -0.4
SYNE1-237ENST00000539504 MAGEA1P43355 309 aa12.52□□□□□ -0.4
SYNE1-237ENST00000539504 PPARDQ03181 441 aa12.52□□□□□ -0.4
SYNE1-237ENST00000539504 NAALADL2Q58DX5 795 aa12.52□□□□□ -0.4
SYNE1-237ENST00000539504 HPS3Q969F9 1004 aa12.52□□□□□ -0.4
SYNE1-237ENST00000539504 DHTKD1Q96HY7 919 aaPredicted RBP12.52□□□□□ -0.4
SYNE1-237ENST00000539504 PCDHA13Q9Y5I0 950 aa12.52□□□□□ -0.4
SYNE1-237ENST00000539504 WTIPA6NIX2 430 aaPredicted RBP12.52□□□□□ -0.41
SYNE1-237ENST00000539504 EIF4A3P38919 411 aaKnown RBP12.52□□□□□ -0.41
SYNE1-237ENST00000539504 ATP2B2Q01814 1243 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 PDCLQ13371 301 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 RRAGAQ7L523 313 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 CABP7Q86V35 215 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 GPATCH11Q8N954 259 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 ZC3H4Q9UPT8 1303 aaKnown RBP12.52□□□□□ -0.41
SYNE1-237ENST00000539504 BUB1O43683 1085 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 FCER1AP12319 257 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 PLCG1P19174 1290 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 STK4Q13043 487 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 KCNB1Q14721 858 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 CACNA2D4Q7Z3S7 1137 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 GIMAP8Q8ND71 665 aaPredicted RBP12.52□□□□□ -0.41
SYNE1-237ENST00000539504 AENQ8WTP8 325 aaKnown RBP12.52□□□□□ -0.41
SYNE1-237ENST00000539504 DUSP9Q99956 384 aaKnown RBP12.52□□□□□ -0.41
SYNE1-237ENST00000539504 RIOK1Q9BRS2 568 aaKnown RBP12.52□□□□□ -0.41
SYNE1-237ENST00000539504 CENPHQ9H3R5 247 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 PCDHA4Q9UN74 947 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 JAG2Q9Y219 1238 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 HYOU1Q9Y4L1 999 aa12.52□□□□□ -0.41
SYNE1-237ENST00000539504 RHOBTB3O94955 611 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 KIF11P52732 1056 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 ENOX2Q16206 610 aaKnown RBP12.51□□□□□ -0.41
SYNE1-237ENST00000539504 LETM2Q2VYF4 491 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 CREG2Q8IUH2 290 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 ARL8AQ96BM9 186 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 SLC4A9Q96Q91 983 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 OSBPL9Q96SU4 736 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 SLC39A2Q9NP94 309 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 NIP7Q9Y221 180 aaKnown RBP eCLIP12.51□□□□□ -0.41
SYNE1-237ENST00000539504 ECM29Q5VYK3 1845 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 PKD1L3Q7Z443 1732 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 TNS2Q63HR2 1409 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 LRP6O75581 1613 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 RNASE9P60153 205 aaKnown RBP12.51□□□□□ -0.41
SYNE1-237ENST00000539504 MMS22LQ6ZRQ5 1243 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 ZNF34Q8IZ26 560 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 SH2D3CQ8N5H7 860 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 BRIP1Q9BX63 1249 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 EIF3HO15372 352 aaKnown RBP eCLIP12.51□□□□□ -0.41
SYNE1-237ENST00000539504 KLRC4O43908 158 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 TCP1P17987 556 aaKnown RBP12.51□□□□□ -0.41
SYNE1-237ENST00000539504 EPHB4P54760 987 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 FBXW10Q5XX13 1052 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 CRNKL1Q9BZJ0 848 aaKnown RBP12.51□□□□□ -0.41
SYNE1-237ENST00000539504 STIM2Q9P246 746 aa12.51□□□□□ -0.41
SYNE1-237ENST00000539504 ERVV-1B6SEH8 477 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 ZNF263O14978 683 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 CFAP58Q5T655 872 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 GBP6Q6ZN66 633 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 STAG2Q8N3U4 1231 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 MMGT1Q8N4V1 131 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 MCM9Q9NXL9 1143 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 GUCY2FP51841 1108 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 RASSF7Q02833 373 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 C4orf32Q8N8J7 132 aa12.5□□□□□ -0.41
SYNE1-237ENST00000539504 TSEN2Q8NCE0 465 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms