RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 CCZ1BP86790 482 aa23.29■■□□□ 1.32
SMPDL3A-203ENST00000539041 CCZ1P86791 482 aaPredicted RBP23.29■■□□□ 1.32
SMPDL3A-203ENST00000539041 DLGAP5Q15398 846 aa23.29■■□□□ 1.32
SMPDL3A-203ENST00000539041 CABP7Q86V35 215 aa23.29■■□□□ 1.32
SMPDL3A-203ENST00000539041 GMCL1P1Q8NEA9 526 aa23.29■■□□□ 1.32
SMPDL3A-203ENST00000539041 HERC5Q9UII4 1024 aaKnown RBP23.29■■□□□ 1.32
SMPDL3A-203ENST00000539041 PPP1R3GB7ZBB8 358 aa23.29■■□□□ 1.32
SMPDL3A-203ENST00000539041 CDK11BP21127 795 aaKnown RBP23.29■■□□□ 1.32
SMPDL3A-203ENST00000539041 MRPL12P52815 198 aaKnown RBP23.29■■□□□ 1.32
SMPDL3A-203ENST00000539041 NAALADL2Q58DX5 795 aa23.29■■□□□ 1.32
SMPDL3A-203ENST00000539041 POTEDQ86YR6 584 aa23.29■■□□□ 1.32
SMPDL3A-203ENST00000539041 CUEDC2Q9H467 287 aa23.29■■□□□ 1.32
SMPDL3A-203ENST00000539041 ZNF70Q9UC06 446 aaPredicted RBP23.29■■□□□ 1.32
SMPDL3A-203ENST00000539041 TCP10L2B9ZVM9 353 aa23.28■■□□□ 1.32
SMPDL3A-203ENST00000539041 RPN1P04843 607 aaKnown RBP23.28■■□□□ 1.32
SMPDL3A-203ENST00000539041 QRICH1Q2TAL8 776 aa23.28■■□□□ 1.32
SMPDL3A-203ENST00000539041 SPATA1Q5VX52 437 aa23.28■■□□□ 1.32
SMPDL3A-203ENST00000539041 OGFOD1Q8N543 542 aa23.28■■□□□ 1.32
SMPDL3A-203ENST00000539041 FAM151AQ8WW52 585 aa23.28■■□□□ 1.32
SMPDL3A-203ENST00000539041 GLT8D2Q9H1C3 349 aa23.28■■□□□ 1.32
SMPDL3A-203ENST00000539041 MAGEF1Q9HAY2 307 aa23.28■■□□□ 1.32
SMPDL3A-203ENST00000539041 CLRN2A0PK11 232 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 GH2P01242 217 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 MYL1P05976 194 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 SKILP12757 684 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 UBE2SQ16763 222 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 KLHL10Q6JEL2 608 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 VSTM4Q8IW00 320 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 NIM1KQ8IY84 436 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 F5H6K3 240 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 TNNI2P48788 182 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 KLRC3Q07444 240 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 CDC37Q16543 378 aaPredicted RBP23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 CALCRLQ16602 461 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 ZNF658Q5TYW1 1059 aaPredicted RBP23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 SMYD4Q8IYR2 804 aaPredicted RBP23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 GMCL1Q96IK5 515 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 MTMR9Q96QG7 549 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 SAMSN1Q9NSI8 373 aaKnown RBP23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 ZNRF3Q9ULT6 936 aa23.27■■□□□ 1.32
SMPDL3A-203ENST00000539041 TPM2P07951 284 aa23.26■■□□□ 1.31
SMPDL3A-203ENST00000539041 TECP42680 631 aa23.26■■□□□ 1.31
SMPDL3A-203ENST00000539041 RRP1BQ14684 758 aaKnown RBP23.26■■□□□ 1.31
SMPDL3A-203ENST00000539041 SPDYE2Q495Y8 402 aa23.26■■□□□ 1.31
SMPDL3A-203ENST00000539041 ARMCX5Q6P1M9 558 aa23.26■■□□□ 1.31
SMPDL3A-203ENST00000539041 PSTPIP2Q9H939 334 aa23.26■■□□□ 1.31
SMPDL3A-203ENST00000539041 CNTNAP1P78357 1384 aa23.25■■□□□ 1.31
SMPDL3A-203ENST00000539041 EDIL3O43854 480 aa23.25■■□□□ 1.31
SMPDL3A-203ENST00000539041 NDUFB10O96000 172 aa23.25■■□□□ 1.31
SMPDL3A-203ENST00000539041 SFPQP23246 707 aaKnown RBP eCLIP23.25■■□□□ 1.31
SMPDL3A-203ENST00000539041 TGFB2P61812 414 aa23.25■■□□□ 1.31
SMPDL3A-203ENST00000539041 JAG1P78504 1218 aa23.25■■□□□ 1.31
SMPDL3A-203ENST00000539041 HSP90AA4PQ58FG1 418 aa23.25■■□□□ 1.31
SMPDL3A-203ENST00000539041 IGSF22Q8N9C0 903 aa23.25■■□□□ 1.31
SMPDL3A-203ENST00000539041 AGBL3Q8NEM8 1001 aa23.25■■□□□ 1.31
SMPDL3A-203ENST00000539041 KBTBD4Q9NVX7 518 aa23.25■■□□□ 1.31
SMPDL3A-203ENST00000539041 PIM2Q9P1W9 311 aa23.25■■□□□ 1.31
SMPDL3A-203ENST00000539041 SYNPO2Q9UMS6 1093 aa23.25■■□□□ 1.31
SMPDL3A-203ENST00000539041 CTNND2Q9UQB3 1225 aa23.25■■□□□ 1.31
SMPDL3A-203ENST00000539041 ZBTB12Q9Y330 459 aaPredicted RBP23.25■■□□□ 1.31
SMPDL3A-203ENST00000539041 TMEM232C9JQI7 657 aa23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 TDP2O95551 362 aa23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 PLCG1P19174 1290 aa23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 FXR2P51116 673 aaKnown RBP eCLIP23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 STX17P56962 302 aa23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 SEMA3FQ13275 785 aa23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 TMEM266Q2M3C6 531 aa23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 MTMR14Q8NCE2 650 aa23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 PLIN2Q99541 437 aa23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 INTS13Q9NVM9 706 aa23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 SLC37A4O43826 429 aa23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 TXKP42681 527 aa23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 KCNB1Q14721 858 aa23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 PPP4R3AQ6IN85 833 aa23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 ATF5Q9Y2D1 282 aaPredicted RBP23.24■■□□□ 1.31
SMPDL3A-203ENST00000539041 NRDCO43847 1150 aa23.23■■□□□ 1.31
SMPDL3A-203ENST00000539041 FKBP1CQ5VVH2 108 aa23.23■■□□□ 1.31
SMPDL3A-203ENST00000539041 CALML4Q96GE6 196 aa23.23■■□□□ 1.31
SMPDL3A-203ENST00000539041 NAP1L4Q99733 375 aaKnown RBP23.23■■□□□ 1.31
SMPDL3A-203ENST00000539041 PCDHA1Q9Y5I3 950 aa23.23■■□□□ 1.31
SMPDL3A-203ENST00000539041 BMP3P12645 472 aa23.22■■□□□ 1.31
SMPDL3A-203ENST00000539041 SYDE2Q5VT97 1194 aa23.22■■□□□ 1.31
SMPDL3A-203ENST00000539041 CDKAL1Q5VV42 579 aa23.22■■□□□ 1.31
SMPDL3A-203ENST00000539041 LRRC15Q8TF66 581 aa23.22■■□□□ 1.31
SMPDL3A-203ENST00000539041 NUP88Q99567 741 aaPredicted RBP23.22■■□□□ 1.31
SMPDL3A-203ENST00000539041 MMTAG2Q9BU76 263 aaKnown RBP23.22■■□□□ 1.31
SMPDL3A-203ENST00000539041 RWDD2AQ9UIY3 292 aa23.22■■□□□ 1.31
SMPDL3A-203ENST00000539041 SMCHD1A6NHR9 2005 aa23.22■■□□□ 1.31
SMPDL3A-203ENST00000539041 GCFC2P16383 781 aaKnown RBP23.22■■□□□ 1.31
SMPDL3A-203ENST00000539041 PAK1Q13153 545 aa23.22■■□□□ 1.31
SMPDL3A-203ENST00000539041 PRIMPOLQ96LW4 560 aa23.22■■□□□ 1.31
SMPDL3A-203ENST00000539041 RAB34Q9BZG1 259 aa23.22■■□□□ 1.31
SMPDL3A-203ENST00000539041 ARHGEF10LQ9HCE6 1279 aa23.22■■□□□ 1.31
SMPDL3A-203ENST00000539041 LRWD1Q9UFC0 647 aa23.22■■□□□ 1.31
SMPDL3A-203ENST00000539041 KLRC4O43908 158 aa23.21■■□□□ 1.31
SMPDL3A-203ENST00000539041 TPD52L1Q16890 204 aaPredicted RBP23.21■■□□□ 1.31
SMPDL3A-203ENST00000539041 BTNL9Q6UXG8 535 aa23.21■■□□□ 1.31
SMPDL3A-203ENST00000539041 AMNQ9BXJ7 453 aa23.21■■□□□ 1.31
SMPDL3A-203ENST00000539041 VEZTQ9HBM0 779 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms