RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 GMNCA6NCL1 334 aa12.04□□□□□ -0.48
CLSTN3-207ENST00000537408 DIAPH2O60879 1101 aa12.04□□□□□ -0.48
CLSTN3-207ENST00000537408 GUCY1B3Q02153 619 aa12.04□□□□□ -0.48
CLSTN3-207ENST00000537408 TRAPPC11Q7Z392 1133 aa12.04□□□□□ -0.48
CLSTN3-207ENST00000537408 CPLX4Q7Z7G2 160 aa12.04□□□□□ -0.48
CLSTN3-207ENST00000537408 ANKRD27Q96NW4 1050 aa12.04□□□□□ -0.48
CLSTN3-207ENST00000537408 NEK1Q96PY6 1258 aa12.04□□□□□ -0.48
CLSTN3-207ENST00000537408 ZNF232Q9UNY5 417 aa12.04□□□□□ -0.48
CLSTN3-207ENST00000537408 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.04□□□□□ -0.48
CLSTN3-207ENST00000537408 USP42Q9H9J4 1324 aaKnown RBP12.04□□□□□ -0.48
CLSTN3-207ENST00000537408 CNGA1P29973 690 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 MTHFD1LQ6UB35 978 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 TEKT4Q8WW24 435 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 BICD1Q96G01 975 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 FAM89AQ96GI7 184 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 RBM41Q96IZ5 413 aaKnown RBP12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 MMS19Q96T76 1030 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 MMTAG2Q9BU76 263 aaKnown RBP12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 TUBE1Q9UJT0 475 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 PCDHGA4Q9Y5G9 962 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 BCL9O00512 1426 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 SEC24CP53992 1094 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 TNIP1Q15025 636 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 GLE1Q53GS7 698 aaKnown RBP12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 LACTB2Q53H82 288 aaPredicted RBP12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 TTMPQ5BVD1 217 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 CCDC102BQ68D86 513 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 Q6ZUG5 572 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 LINC00301Q8NCQ3 95 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 ACRBPQ8NEB7 543 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 IQCA1LA6NCM1 817 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 ALDH3A1P30838 453 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 RIPK1Q13546 671 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 SEPT2Q15019 361 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 ZNF827Q17R98 1081 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 C6orf89Q6UWU4 347 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 SLF2Q8IX21 1173 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 MMADHCQ9H3L0 296 aaPredicted RBP12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 RIMBP2O15034 1052 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 TFRCP02786 760 aaKnown RBP12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 SLC5A1P13866 664 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 AMPD2Q01433 879 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 TAF11Q15544 211 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 CCDC129Q6ZRS4 1044 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 CACNA2D4Q7Z3S7 1137 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 ZNF804AQ7Z570 1209 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 SH2D3CQ8N5H7 860 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 JAKMIP2Q96AA8 810 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 VCXQ9H320 206 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 HAUS4Q9H6D7 363 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 SWAP70Q9UH65 585 aa12.03□□□□□ -0.48
CLSTN3-207ENST00000537408 RNF8O76064 485 aa12.02□□□□□ -0.48
CLSTN3-207ENST00000537408 UFL1O94874 794 aa12.02□□□□□ -0.48
CLSTN3-207ENST00000537408 DESP17661 470 aa12.02□□□□□ -0.48
CLSTN3-207ENST00000537408 CCND1P24385 295 aa12.02□□□□□ -0.48
CLSTN3-207ENST00000537408 RBL2Q08999 1139 aa12.02□□□□□ -0.48
CLSTN3-207ENST00000537408 ODF2Q5BJF6 829 aa12.02□□□□□ -0.48
CLSTN3-207ENST00000537408 MAATS1Q7Z4T9 603 aa12.02□□□□□ -0.48
CLSTN3-207ENST00000537408 SEC62Q99442 399 aaKnown RBP12.02□□□□□ -0.48
CLSTN3-207ENST00000537408 METTL22Q9BUU2 404 aaPredicted RBP12.02□□□□□ -0.48
CLSTN3-207ENST00000537408 BOLA2Q9H3K6 86 aa12.02□□□□□ -0.48
CLSTN3-207ENST00000537408 ECHDC1Q9NTX5 307 aa12.02□□□□□ -0.48
CLSTN3-207ENST00000537408 OPLAHO14841 1288 aa12.02□□□□□ -0.49
CLSTN3-207ENST00000537408 RPS8P62241 208 aaKnown RBP12.02□□□□□ -0.49
CLSTN3-207ENST00000537408 JADE2Q9NQC1 790 aa12.02□□□□□ -0.49
CLSTN3-207ENST00000537408 UBN2Q6ZU65 1347 aa12.02□□□□□ -0.49
CLSTN3-207ENST00000537408 MFAP3LO75121 409 aa12.02□□□□□ -0.49
CLSTN3-207ENST00000537408 DPEP1P16444 411 aa12.02□□□□□ -0.49
CLSTN3-207ENST00000537408 RALYLQ86SE5 291 aaKnown RBP12.02□□□□□ -0.49
CLSTN3-207ENST00000537408 MLKLQ8NB16 471 aa12.02□□□□□ -0.49
CLSTN3-207ENST00000537408 FAM167BQ9BTA0 163 aa12.02□□□□□ -0.49
CLSTN3-207ENST00000537408 HSD3B7Q9H2F3 369 aa12.02□□□□□ -0.49
CLSTN3-207ENST00000537408 PPEF1O14829 653 aaPredicted RBP12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 MRPS35P82673 323 aaKnown RBP12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 LACTBP83111 547 aaPredicted RBP12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 USP4Q13107 963 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 IFI16Q16666 785 aaKnown RBP12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 LMBR1LQ6UX01 489 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 SEC16BQ96JE7 1060 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 INTS13Q9NVM9 706 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 POLR3EQ9NVU0 708 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 PSMD14O00487 310 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 ZSCAN9O15535 394 aaPredicted RBP12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 FMNL1O95466 1100 aaPredicted RBP12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 HPDP32754 393 aaPredicted RBP12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 PAK2Q13177 524 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 RBM26Q5T8P6 1007 aaKnown RBP12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 AIDAQ96BJ3 306 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 LRRC4BQ9NT99 713 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 ABLIM1O14639 778 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 GYS1P13807 737 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 PCK1P35558 622 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 CD151P48509 253 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 ATP11AP98196 1134 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 NMIQ13287 307 aaPredicted RBP12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 PNOCQ13519 176 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 PTF1AQ7RTS3 328 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 GBP7Q8N8V2 638 aaPredicted RBP12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 ATP6V1G3Q96LB4 118 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 NUP88Q99567 741 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms