RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 GPATCH4Q5T3I0 446 aaKnown RBP18.12■□□□□ 0.49
CPSF1-211ENST00000533492 PCSK9Q8NBP7 692 aaKnown RBP18.12■□□□□ 0.49
CPSF1-211ENST00000533492 LRCH3Q96II8 777 aa18.12■□□□□ 0.49
CPSF1-211ENST00000533492 KRT23Q9C075 422 aa18.12■□□□□ 0.49
CPSF1-211ENST00000533492 KAT14Q9H8E8 782 aa18.12■□□□□ 0.49
CPSF1-211ENST00000533492 MOXD2PA6NHM9 499 aa18.11■□□□□ 0.49
CPSF1-211ENST00000533492 SNHG28P0DPA3 235 aa18.11■□□□□ 0.49
CPSF1-211ENST00000533492 GSPT1P15170 499 aaKnown RBP18.11■□□□□ 0.49
CPSF1-211ENST00000533492 PNMA1Q8ND90 353 aa18.11■□□□□ 0.49
CPSF1-211ENST00000533492 KLHDC9Q8NEP7 349 aa18.11■□□□□ 0.49
CPSF1-211ENST00000533492 VTI1AQ96AJ9 217 aa18.11■□□□□ 0.49
CPSF1-211ENST00000533492 ZSCAN10Q96SZ4 725 aaPredicted RBP18.11■□□□□ 0.49
CPSF1-211ENST00000533492 CNNM2Q9H8M5 875 aa18.11■□□□□ 0.49
CPSF1-211ENST00000533492 STARD7Q9NQZ5 370 aa18.11■□□□□ 0.49
CPSF1-211ENST00000533492 ZSWIM5Q9P217 1185 aa18.11■□□□□ 0.49
CPSF1-211ENST00000533492 PTPDC1A2A3K4 754 aa18.1■□□□□ 0.49
CPSF1-211ENST00000533492 GOLGA8HP0CJ92 632 aa18.1■□□□□ 0.49
CPSF1-211ENST00000533492 TNFAIP2Q03169 654 aa18.1■□□□□ 0.49
CPSF1-211ENST00000533492 BAATQ14032 418 aaPredicted RBP18.1■□□□□ 0.49
CPSF1-211ENST00000533492 LRIT3Q3SXY7 679 aa18.1■□□□□ 0.49
CPSF1-211ENST00000533492 GNASQ5JWF2 1037 aa18.1■□□□□ 0.49
CPSF1-211ENST00000533492 GLT1D1Q96MS3 346 aa18.1■□□□□ 0.49
CPSF1-211ENST00000533492 UBAC1Q9BSL1 405 aa18.1■□□□□ 0.49
CPSF1-211ENST00000533492 KATNBL1Q9H079 304 aa18.1■□□□□ 0.49
CPSF1-211ENST00000533492 ADD3Q9UEY8 706 aaKnown RBP18.1■□□□□ 0.49
CPSF1-211ENST00000533492 RAD50Q92878 1312 aa18.09■□□□□ 0.49
CPSF1-211ENST00000533492 PQBP1O60828 265 aaKnown RBP18.09■□□□□ 0.49
CPSF1-211ENST00000533492 GJA9P57773 515 aa18.09■□□□□ 0.49
CPSF1-211ENST00000533492 EEPD1Q7L9B9 569 aa18.09■□□□□ 0.49
CPSF1-211ENST00000533492 ANKS1AQ92625 1134 aa18.09■□□□□ 0.49
CPSF1-211ENST00000533492 UBA5Q9GZZ9 404 aa18.09■□□□□ 0.49
CPSF1-211ENST00000533492 PDLIM7Q9NR12 457 aa18.09■□□□□ 0.49
CPSF1-211ENST00000533492 TNKSO95271 1327 aa18.08■□□□□ 0.49
CPSF1-211ENST00000533492 LAMA4Q16363 1823 aa18.08■□□□□ 0.48
CPSF1-211ENST00000533492 MYADML2A6NDP7 307 aa18.08■□□□□ 0.48
CPSF1-211ENST00000533492 NFIBO00712 420 aa18.08■□□□□ 0.48
CPSF1-211ENST00000533492 ADCY6O43306 1168 aa18.08■□□□□ 0.48
CPSF1-211ENST00000533492 ASGR1P07306 291 aa18.08■□□□□ 0.48
CPSF1-211ENST00000533492 CLTBP09497 229 aa18.08■□□□□ 0.48
CPSF1-211ENST00000533492 CST5P28325 142 aaPredicted RBP18.08■□□□□ 0.48
CPSF1-211ENST00000533492 TRDNQ13061 729 aa18.08■□□□□ 0.48
CPSF1-211ENST00000533492 CCSAPQ6IQ19 270 aaPredicted RBP18.08■□□□□ 0.48
CPSF1-211ENST00000533492 SH3RF1Q7Z6J0 888 aa18.08■□□□□ 0.48
CPSF1-211ENST00000533492 ENAHQ8N8S7 591 aaPredicted RBP18.08■□□□□ 0.48
CPSF1-211ENST00000533492 BADQ92934 168 aa18.08■□□□□ 0.48
CPSF1-211ENST00000533492 PURBQ96QR8 312 aaKnown RBP18.08■□□□□ 0.48
CPSF1-211ENST00000533492 AP5M1Q9H0R1 490 aa18.08■□□□□ 0.48
CPSF1-211ENST00000533492 UPF3AQ9H1J1 476 aaKnown RBP18.08■□□□□ 0.48
CPSF1-211ENST00000533492 IL25Q9H293 177 aa18.08■□□□□ 0.48
CPSF1-211ENST00000533492 ELP1O95163 1332 aa18.07■□□□□ 0.48
CPSF1-211ENST00000533492 WDR19Q8NEZ3 1342 aa18.07■□□□□ 0.48
CPSF1-211ENST00000533492 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.07■□□□□ 0.48
CPSF1-211ENST00000533492 DCDC2CA8MYV0 355 aa18.07■□□□□ 0.48
CPSF1-211ENST00000533492 CHMLP26374 656 aa18.07■□□□□ 0.48
CPSF1-211ENST00000533492 CALML3P27482 149 aa18.07■□□□□ 0.48
CPSF1-211ENST00000533492 IRX5P78411 483 aaPredicted RBP18.07■□□□□ 0.48
CPSF1-211ENST00000533492 IQSEC1Q6DN90 963 aa18.07■□□□□ 0.48
CPSF1-211ENST00000533492 RNF207Q6ZRF8 634 aa18.07■□□□□ 0.48
CPSF1-211ENST00000533492 MPHOSPH6Q99547 160 aaKnown RBP18.07■□□□□ 0.48
CPSF1-211ENST00000533492 VTA1Q9NP79 307 aa18.07■□□□□ 0.48
CPSF1-211ENST00000533492 TMEM39AQ9NV64 488 aa18.07■□□□□ 0.48
CPSF1-211ENST00000533492 DDX49Q9Y6V7 483 aaKnown RBP18.07■□□□□ 0.48
CPSF1-211ENST00000533492 U3KPZ7 1027 aaPredicted RBP18.07■□□□□ 0.48
CPSF1-211ENST00000533492 SZT2Q5T011 3432 aa18.06■□□□□ 0.48
CPSF1-211ENST00000533492 ASTN1O14525 1302 aa18.06■□□□□ 0.48
CPSF1-211ENST00000533492 TRIM43BA6NCK2 446 aa18.06■□□□□ 0.48
CPSF1-211ENST00000533492 DHX16O60231 1041 aaKnown RBP18.06■□□□□ 0.48
CPSF1-211ENST00000533492 PARP1P09874 1014 aaKnown RBP18.06■□□□□ 0.48
CPSF1-211ENST00000533492 RAG1P15918 1043 aa18.06■□□□□ 0.48
CPSF1-211ENST00000533492 ALDH5A1P51649 535 aaPredicted RBP18.06■□□□□ 0.48
CPSF1-211ENST00000533492 USH1GQ495M9 461 aa18.06■□□□□ 0.48
CPSF1-211ENST00000533492 ASPRV1Q53RT3 343 aa18.06■□□□□ 0.48
CPSF1-211ENST00000533492 IFIT1BQ5T764 474 aaKnown RBP18.06■□□□□ 0.48
CPSF1-211ENST00000533492 GPR153Q6NV75 609 aa18.06■□□□□ 0.48
CPSF1-211ENST00000533492 KIAA1211Q6ZU35 1233 aa18.06■□□□□ 0.48
CPSF1-211ENST00000533492 FBXO16Q8IX29 292 aaPredicted RBP18.06■□□□□ 0.48
CPSF1-211ENST00000533492 CLEC4DQ8WXI8 215 aa18.06■□□□□ 0.48
CPSF1-211ENST00000533492 TRIM43Q96BQ3 446 aaPredicted RBP18.06■□□□□ 0.48
CPSF1-211ENST00000533492 TOX2Q96NM4 488 aa18.06■□□□□ 0.48
CPSF1-211ENST00000533492 CPVLQ9H3G5 476 aa18.06■□□□□ 0.48
CPSF1-211ENST00000533492 PDGFCQ9NRA1 345 aa18.06■□□□□ 0.48
CPSF1-211ENST00000533492 MROH7Q68CQ1 1323 aa18.05■□□□□ 0.48
CPSF1-211ENST00000533492 LOC102724159A0A0B4J2E5 919 aa18.05■□□□□ 0.48
CPSF1-211ENST00000533492 DYNC1LI2O43237 492 aaPredicted RBP18.05■□□□□ 0.48
CPSF1-211ENST00000533492 ZEB2O60315 1214 aa18.05■□□□□ 0.48
CPSF1-211ENST00000533492 SMPD1P17405 629 aa18.05■□□□□ 0.48
CPSF1-211ENST00000533492 RPS6P62753 249 aaKnown RBP18.05■□□□□ 0.48
CPSF1-211ENST00000533492 BEX3Q00994 111 aa18.05■□□□□ 0.48
CPSF1-211ENST00000533492 PWP2Q15269 919 aaKnown RBP18.05■□□□□ 0.48
CPSF1-211ENST00000533492 TAPT1Q6NXT6 567 aa18.05■□□□□ 0.48
CPSF1-211ENST00000533492 ANKRD33Q7Z3H0 272 aa18.05■□□□□ 0.48
CPSF1-211ENST00000533492 TLK2Q86UE8 772 aa18.05■□□□□ 0.48
CPSF1-211ENST00000533492 VAT1LQ9HCJ6 419 aa18.05■□□□□ 0.48
CPSF1-211ENST00000533492 GNEQ9Y223 722 aaKnown RBP18.05■□□□□ 0.48
CPSF1-211ENST00000533492 A0A0U1RQG5 324 aaPredicted RBP18.04■□□□□ 0.48
CPSF1-211ENST00000533492 B4DLN1 442 aa18.04■□□□□ 0.48
CPSF1-211ENST00000533492 KIAA0355O15063 1070 aa18.04■□□□□ 0.48
CPSF1-211ENST00000533492 MRPL12P52815 198 aaKnown RBP18.04■□□□□ 0.48
CPSF1-211ENST00000533492 NKX3-2P78367 333 aa18.04■□□□□ 0.48
CPSF1-211ENST00000533492 PTH1RQ03431 593 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms