RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 HSP90AB2PQ58FF8 381 aa6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 EXOSC6Q5RKV6 272 aaKnown RBP6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 MPRIPQ6WCQ1 1025 aa6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 HID1Q8IV36 788 aa6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 MCATQ8IVS2 390 aaKnown RBP6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 GPR161Q8N6U8 529 aaKnown RBP6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 FAM13CQ8NE31 585 aa6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 NINJ1Q92982 152 aa6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 ATXN3LQ9H3M9 355 aa6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 ANTXR1Q9H6X2 564 aa6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 KANSL2Q9H9L4 492 aa6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 KLHL3Q9UH77 587 aa6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 CORINQ9Y5Q5 1042 aa6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 ANKRD30AQ9BXX3 1397 aa6.31□□□□□ -1.4
HMGB1P23-201ENST00000518743 COL5A2P05997 1499 aaPredicted RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 COL6A3P12111 3177 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 UPK3BL1B0FP48 263 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 B2RBV5 119 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 UPK3BL2E5RIL1 263 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 ZNF862O60290 1169 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 DIAPH1O60610 1272 aaKnown RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 AOC2O75106 756 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 S100BP04271 92 aaPredicted RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 VSIG8P0DPA2 414 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 CPEP16870 476 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 CD68P34810 354 aaPredicted RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 PMS1P54277 932 aaKnown RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 INSM1Q01101 510 aaPredicted RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 GAS6Q14393 721 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 HSP90AA2PQ14568 343 aaPredicted RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 FNDC3BQ53EP0 1204 aaKnown RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 DALRD3Q5D0E6 543 aaKnown RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 MRM1Q6IN84 353 aaKnown RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 CDC37L1Q7L3B6 337 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 MRPL41Q8IXM3 137 aaKnown RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 NIM1KQ8IY84 436 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 PHACTR4Q8IZ21 702 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 CRACR2BQ8N4Y2 399 aaPredicted RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 PRPF38AQ8NAV1 312 aaKnown RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 NGDNQ8NEJ9 315 aaKnown RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 CHAC2Q8WUX2 184 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 CCDC136Q96JN2 1154 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 CCDC74BQ96LY2 380 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 SLC9A7Q96T83 725 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 KIF2CQ99661 725 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 CDC6Q99741 560 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 APBA2Q99767 749 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 DDX56Q9NY93 547 aaKnown RBP6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 ITSN1Q15811 1721 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 SBF1O95248 1867 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 PLEKHH1Q9ULM0 1364 aa6.3□□□□□ -1.4
HMGB1P23-201ENST00000518743 LOC100289279A0A1B0GTE1 492 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 GLTPD2A6NH11 291 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 DCDC2CA8MYV0 355 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 M0R082 166 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 RGS13O14921 159 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 ACRP10323 421 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 LIG1P18858 919 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 CNGA1P29973 690 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 AMPD3Q01432 767 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 RING1Q06587 406 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 CT47A1Q5JQC4 288 aaPredicted RBP6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 RNF214Q8ND24 703 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 ZNF417Q8TAU3 575 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 KLHDC7BQ96G42 594 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 ZNF587Q96SQ5 575 aaPredicted RBP6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 GBP3Q9H0R5 595 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 IRF2BPLQ9H1B7 796 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 CAAP1Q9H8G2 361 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 SUCOQ9UBS9 1254 aaKnown RBP6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 MCM8Q9UJA3 840 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 STARD13Q9Y3M8 1113 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 LMO7Q8WWI1 1683 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 COL18A1P39060 1754 aa6.29□□□□□ -1.4
HMGB1P23-201ENST00000518743 LTBP3Q9NS15 1303 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 KNDC1Q76NI1 1749 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 ARFGEF1Q9Y6D6 1849 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 DNAJC25-GNG10A0A024R161 153 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 TRAV20A0A0B4J274 112 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 ALG1L2C9J202 215 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 PLD2O14939 933 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 ALBP02768 609 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 HCLS1P14317 486 aaPredicted RBP6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 SELPP16109 830 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 LORP23490 312 aaPredicted RBP6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 GBP1P32455 592 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 CAP2P40123 477 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 CDK8P49336 464 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 NLRP12P59046 1061 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 SV2CQ496J9 727 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 TM4SF20Q53R12 229 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 ZBTB37Q5TC79 503 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 HEATR6Q6AI08 1181 aaKnown RBP6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 TXNDC11Q6PKC3 985 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 C12orf40Q86WS4 652 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 SCUBE1Q8IWY4 988 aa6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 SYTL4Q96C24 671 aaPredicted RBP6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 ACSF2Q96CM8 615 aaPredicted RBP6.28□□□□□ -1.4
HMGB1P23-201ENST00000518743 FAM122AQ96E09 287 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms