RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CENPBP07199 599 aaPredicted RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 P4HBP07237 508 aaKnown RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 SYPP08247 313 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZGLP1P0C6A0 271 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 USP17L7P0C7H9 530 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 CYP2C8P10632 490 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 CDK4P11802 303 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ACPPP15309 386 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 PRKCAP17252 672 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 PAMP19021 973 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 PI3P19957 117 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 HOXA5P20719 270 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 DNAJA1P31689 397 aaKnown RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 L1CAMP32004 1257 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 MCM4P33991 863 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 BMP8BP34820 402 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 MAGEA10P43363 369 aaPredicted RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 LIG3P49916 1009 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ERVFRD-1P60508 538 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZXDAP98168 799 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ARHGAP4P98171 946 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 FANCCQ00597 558 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 LMNB2Q03252 620 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 FMR1Q06787 632 aaKnown RBP eCLIP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 TNK2Q07912 1038 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF252P-AS1Q0IIN9 211 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ABHD18Q0P651 414 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ORC1Q13415 861 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 BIRC2Q13490 618 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLBPQ14493 270 aaKnown RBP eCLIP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 DSC3Q14574 896 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 PUM1Q14671 1186 aaKnown RBP eCLIP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 RALBP1Q15311 655 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ARSHQ5FYA8 562 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM26FQ5R3K3 315 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 TMEM201Q5SNT2 666 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 MROH9Q5TGP6 573 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 PRAMEF18Q5VWM3 479 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 INTS3Q68E01 1043 aaKnown RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ETV3LQ6ZN32 361 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 AGMOQ6ZNB7 445 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 TMC6Q7Z403 805 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 LRP10Q7Z4F1 713 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ADAT2Q7Z6V5 191 aaKnown RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 FILIP1Q7Z7B0 1213 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 RALYLQ86SE5 291 aaKnown RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 CDH24Q86UP0 819 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 PDZD3Q86UT5 571 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 CIR1Q86X95 450 aaPredicted RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 KIAA0825Q8IV33 1275 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 TEX2Q8IWB9 1127 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 CCDC144CPQ8IYA2 1237 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 CKAP2LQ8IYA6 745 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 SYNE4Q8N205 404 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 LZTR1Q8N653 840 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 DTWD2Q8NBA8 298 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 NETO2Q8NC67 525 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 OR6P1Q8NGX9 317 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 PMFBP1Q8TBY8 1022 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 EPS8L3Q8TE67 593 aaKnown RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 XAGE3Q8WTP9 111 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 GATAD2BQ8WXI9 593 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ALG3Q92685 438 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 JARID2Q92833 1246 aaPredicted RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 CRELD1Q96HD1 420 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 MRFAP1L1Q96HT8 127 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 GPATCH3Q96I76 525 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 MAP6Q96JE9 813 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 HEXIM2Q96MH2 286 aaKnown RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 KREMEN1Q96MU8 473 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 KCNC2Q96PR1 638 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 HHIPQ96QV1 700 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 FERD3LQ96RJ6 166 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 CRAMP1Q96RY5 1269 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 TMEM209Q96SK2 561 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 TM9SF2Q99805 663 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 PRRX2Q99811 253 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 BDH2Q9BUT1 245 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 RSRP1Q9BUV0 290 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF341Q9BYN7 854 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 MCOLN1Q9GZU1 580 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 RNF32Q9H0A6 362 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 TMEM168Q9H0V1 697 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 CSRNP2Q9H175 543 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLKQ9H2G2 1235 aaPredicted RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ACBD3Q9H3P7 528 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 PIF1Q9H611 641 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 PCDH12Q9NPG4 1184 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ANO2Q9NQ90 1003 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 LATS2Q9NRM7 1088 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 CHST7Q9NS84 486 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 SEMA3GQ9NS98 782 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 TYW1Q9NV66 732 aaKnown RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 IFT57Q9NWB7 429 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLC52A1Q9NWF4 448 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 CHPF2Q9P2E5 772 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 VTI1BQ9UEU0 232 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 PARP2Q9UGN5 583 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 SUSD2Q9UGT4 822 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 KLHL3Q9UH77 587 aa0.77□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms